Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8389653.1

Orthogroup ID

OG0006055

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1205

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8389653.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 986 bp

tttttttccagattgaggcccttaaggcaattggtgtgaccgaagtggttctggctatcaattaccaaccagaggtgatgctgaatttcttgaaggagtttgagacaaaggttgggatcaagatcacatgttcacaagagactgaaccccttggcactgctggtcctctggctcttgctagggacaaactgatagacgaatctggtgaacccttctttgtccttaacagtgatgtgatcagtgattacccactaaaagaaatgattgaattccataaatcccatggaggagaggcttctataatggtgaccaaggtggatgagccatcaaaatatggagtggtggttatggaagagtctacagggaaagtggagaaatttgtggagaaacccaaattgtttgttggcaacaaaatcaatgctggaatatatttgttgaatcccgaagttcttgatcgtattcaactgagaccaacctcaattgagaaagaggttttcccaaagattgcatcagagaataagctctttgcaatggtccttccagggttttggatggacattggacagccaaaggattatatcacaggcctgagactctacttagactcgttgaggaagaagtcttcatctaagttgtccaatggcacccacatcgtgggaaatgttctggtagatgagactgctacaattggtgaggggtgcctgattggaccagatgttgcaattggtcccggctgtgtggttgaatcaggagttaggctttctcgctgcacggtaatgcgcggtgttcggatcaagaagcatgcttgcatttccagtagtatcattggatggcactccactgttgggcaatgggctcgtgtggagaacatgactatccttggtgaagatgttcacgtaagtgatgaaatctacagcaatggaggtgtggttttgcctcacaaagaaatcaagtcgagcattttgaagccagagattgttatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004475 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005996 GO:0006073 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008905 GO:0009058 GO:0009059 GO:0009108 GO:0009110 GO:0009250 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0016051 GO:0016053 GO:0016740 GO:0016772 GO:0016779 GO:0019752 GO:0019852 GO:0019853 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042364 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0046394 GO:0046677 GO:0050896 GO:0051186 GO:0051188 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060359 GO:0070568 GO:0071704 GO:0098542 GO:1901576 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110

Pfam Domains

Protein Families

Hexapep NTP_transferase

Protein Analysis

327

Amino Acids

35.96

Weight (kDa)

5.75

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39770 AT2G39770 AT2G39770 AT3G55590
fragaria_vesca	FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380
malus_domestica	MD01G1139900.v1.1 MD07G1204200.v1.1
prunus_persica	Prupe.2G240500_v2.0.a1
pyrus_communis	pycom01g16040 pycom07g19080
rosa_chinensis	RchiOBHm_Chr1g0368511
rosa_laevigata	RLG00000027207
rosa_multiflora	Rmu_co8389653.1_g000001 Rmu_sc0006908.1_g000002 Rmu_sc0011394.1_g000010
rosa_roxburghii	Rroxscaffold_4G00288480
rosa_rugosa	Rorug01G0342400 Rorug01G0342500 Rorug01G0342500
rosa_samantha	Rh1AG349800 Rh1BG312900 Rh1CG327700 Rh1DG344400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	643, 698
AccB7I	CCANNNNNTGG	1 cut(s)	654
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	1 cut(s)	782
AciI	CCGC	1 cut(s)	782
AclWI	GGATC	2 cut(s)	124, 799
AcsI	RAATTY	3 cut(s)	84, 268, 376
AdeI	CACNNNGTG	1 cut(s)	654
AfiI	CCNNNNNNNGG	4 cut(s)	15, 72, 654, 845
AflII	CTTAAG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	6 cut(s)	93, 268, 438, 463, 745, 966
AjnI	CCWGG	1 cut(s)	540
AleI	CACNNNNGTG	1 cut(s)	899
AluBI	AGCT	1 cut(s)	522
AluI	AGCT	1 cut(s)	522
Alw26I	GTCTC	5 cut(s)	97, 133, 462, 585, 670
AlwI	GGATC	2 cut(s)	124, 799
AoxI	GGCC	2 cut(s)	17, 585
ApeKI	GCWGC	1 cut(s)	767
ApoI	RAATTY	3 cut(s)	84, 268, 376
Asp700I	GAANNNNTTC	2 cut(s)	47, 890
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	5 cut(s)	18, 163, 534, 709, 727
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	5 cut(s)	87, 217, 318, 703, 895
AvaII	GGWCC	4 cut(s)	163, 534, 709, 727
BanI	GGYRCC	2 cut(s)	643, 698
BanII	GRGCYC	1 cut(s)	858
BauI	CACGAG	1 cut(s)	857
BbsI	GAAGAC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	754
BccI	CCATC	3 cut(s)	333, 546, 824
BcgI	CGANNNNNNTGC	4 cut(s)	633, 667, 838, 872
BciT130I	CCWGG	1 cut(s)	542
BclI	TGATCA	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	5 cut(s)	97, 133, 462, 585, 670
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	2 cut(s)	359, 912
BfrI	CTTAAG	1 cut(s)	22
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	768
BlsI	GCNGC	1 cut(s)	769
Bme1390I	CCNGG	2 cut(s)	542, 731
Bme18I	GGWCC	4 cut(s)	163, 534, 709, 727
BmgT120I	GGNCC	5 cut(s)	18, 163, 534, 709, 727
BmiI	GGNNCC	3 cut(s)	645, 700, 729
BmrFI	CCNGG	2 cut(s)	542, 731
BmsI	GCATC	2 cut(s)	68, 517
BpiI	GAAGAC	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	731
BsaAI	YACGTR	1 cut(s)	897
BsaBI	GATNNNNATC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	462
BsaJI	CCNNGG	5 cut(s)	150, 282, 311, 541, 879
BsaXI	ACNNNNNCTCC	4 cut(s)	329, 359, 914, 944
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 72, 654, 845
Bse1I	ACTGG	1 cut(s)	815
Bse3DI	GCAATG	3 cut(s)	536, 856, 924
Bse8I	GATNNNNATC	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	5 cut(s)	150, 282, 311, 541, 879
BseGI	GGATG	3 cut(s)	324, 557, 835
BseJI	GATNNNNATC	1 cut(s)	121
BseLI	CCNNNNNNNGG	4 cut(s)	15, 72, 654, 845
BseMI	GCAATG	3 cut(s)	536, 856, 924
BseMII	CTCAG	2 cut(s)	457, 580
BseNI	ACTGG	1 cut(s)	815
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	754
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	782
BshFI	GGCC	2 cut(s)	19, 587
BshNI	GGYRCC	2 cut(s)	643, 698
BsiSI	CCGG	1 cut(s)	731
BslFI	GGGAC	2 cut(s)	196, 713
BslI	CCNNNNNNNGG	4 cut(s)	15, 72, 654, 845
BsmAI	GTCTC	5 cut(s)	97, 133, 462, 585, 670
BsmFI	GGGAC	2 cut(s)	196, 713
BsnI	GGCC	2 cut(s)	19, 587
Bso31I	GGTCTC	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp143I	GATC	5 cut(s)	116, 122, 236, 453, 791
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	1 cut(s)	782
BspANI	GGCC	2 cut(s)	19, 587
BspCNI	CTCAG	2 cut(s)	458, 581
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	3 cut(s)	645, 700, 729
BspPI	GGATC	2 cut(s)	124, 799
BspT107I	GGYRCC	2 cut(s)	643, 698
BspTI	CTTAAG	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	462
BsrDI	GCAATG	3 cut(s)	536, 856, 924
BsrI	ACTGG	1 cut(s)	815
BssECI	CCNNGG	5 cut(s)	150, 282, 311, 541, 879
BssMI	GATC	5 cut(s)	116, 122, 236, 453, 791
BssSI	CACGAG	1 cut(s)	857
BssT1I	CCWWGG	4 cut(s)	150, 282, 311, 879
Bst2BI	CACGAG	1 cut(s)	857
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	3 cut(s)	229, 774, 843
Bst6I	CTCTTC	1 cut(s)	347
BstAFI	CTTAAG	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	897
BstC8I	GCNNGC	2 cut(s)	803, 807
BstDEI	CTNAG	4 cut(s)	466, 589, 600, 629
BstDSI	CCRYGG	1 cut(s)	282
BstEII	GGTNACC	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	324, 557, 835
BstFNI	CGCG	1 cut(s)	782
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	5 cut(s)	119, 125, 239, 456, 794
BstMAI	GTCTC	5 cut(s)	97, 133, 462, 585, 670
BstMBI	GATC	5 cut(s)	116, 122, 236, 453, 791
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	542
BstNSI	RCATGY	2 cut(s)	131, 805
BstPI	GGTNACC	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	540, 729
BstSFI	CTRYAG	2 cut(s)	359, 912
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	1 cut(s)	754
BstV2I	GAAGAC	1 cut(s)	614
BstXI	CCANNNNNNTGG	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	19, 587
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	324, 557, 835
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	4 cut(s)	155, 234, 246, 839
Cac8I	GCNNGC	2 cut(s)	803, 807
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	5 cut(s)	18, 163, 534, 709, 727
CviAII	CATG	4 cut(s)	128, 283, 802, 870
DdeI	CTNAG	4 cut(s)	466, 589, 600, 629
DpnI	GATC	5 cut(s)	118, 124, 238, 455, 793
DpnII	GATC	5 cut(s)	116, 122, 236, 453, 791
DraIII	CACNNNGTG	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco130I	CCWWGG	4 cut(s)	150, 282, 311, 879
Eco147I	AGGCCT	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	858
Eco31I	GGTCTC	1 cut(s)	462
Eco47I	GGWCC	4 cut(s)	163, 534, 709, 727
Eco91I	GGTNACC	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	540
EcoT14I	CCWWGG	4 cut(s)	150, 282, 311, 879
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	4 cut(s)	150, 282, 311, 879
FaeI	CATG	4 cut(s)	131, 286, 805, 873
FaqI	GGGAC	2 cut(s)	196, 713
FatI	CATG	4 cut(s)	127, 282, 801, 869
FbaI	TGATCA	1 cut(s)	236
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	768
FokI	GGATG	3 cut(s)	331, 564, 842
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	1 cut(s)	768
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	1 cut(s)	768
HaeIII	GGCC	2 cut(s)	19, 587
HapII	CCGG	1 cut(s)	731
HhaI	GCGC	1 cut(s)	782
Hin1II	CATG	4 cut(s)	131, 286, 805, 873
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HinfI	GANTC	6 cut(s)	199, 355, 438, 593, 604, 745
HpaII	CCGG	1 cut(s)	731
HphI	GGTGA	5 cut(s)	87, 217, 318, 703, 895
Hpy166II	GTNNAC	4 cut(s)	133, 208, 359, 894
Hpy188I	TCNGA	2 cut(s)	513, 791
Hpy188III	TCNNGA	7 cut(s)	9, 90, 120, 442, 451, 749, 795
Hpy8I	GTNNAC	4 cut(s)	133, 208, 359, 894
HpyAV	CCTTC	3 cut(s)	87, 222, 547
HpyCH4III	ACNGT	3 cut(s)	229, 774, 843
HpyCH4IV	ACGT	1 cut(s)	896
HpyCH4V	TGCA	5 cut(s)	508, 529, 721, 770, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	4 cut(s)	466, 589, 600, 629
HpySE526I	ACGT	1 cut(s)	896
Hsp92II	CATG	4 cut(s)	131, 286, 805, 873
HspAI	GCGC	1 cut(s)	780
Ksp22I	TGATCA	1 cut(s)	236
Kzo9I	GATC	5 cut(s)	116, 122, 236, 453, 791
Lsp1109I	GCAGC	1 cut(s)	754
LweI	GCATC	2 cut(s)	68, 517
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	896
MaeIII	GTNAC	2 cut(s)	36, 306
MalI	GATC	5 cut(s)	118, 124, 238, 455, 793
MboI	GATC	5 cut(s)	116, 122, 236, 453, 791
MboII	GAAGA	4 cut(s)	364, 614, 627, 898
MfeI	CAATTG	4 cut(s)	29, 479, 686, 722
MhlI	GDGCHC	1 cut(s)	858
MluCI	AATT	9 cut(s)	29, 60, 84, 268, 376, 394, 479, 686, 722
MlyI	GAGTC	3 cut(s)	364, 587, 598
MroXI	GAANNNNTTC	2 cut(s)	47, 890
MseI	TTAA	2 cut(s)	23, 224
MslI	CAYNNNNRTG	2 cut(s)	775, 899
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	1 cut(s)	731
MspR9I	CCNGG	2 cut(s)	542, 731
MunI	CAATTG	4 cut(s)	29, 479, 686, 722
MvaI	CCWGG	1 cut(s)	542
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	731
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	5 cut(s)	116, 122, 236, 453, 791
NlaIII	CATG	4 cut(s)	131, 286, 805, 873
NlaIV	GGNNCC	3 cut(s)	645, 700, 729
NmuCI	GTSAC	2 cut(s)	36, 306
NspI	RCATGY	2 cut(s)	131, 805
OliI	CACNNNNGTG	1 cut(s)	899
PaeI	GCATGC	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	587
PciI	ACATGT	1 cut(s)	127
PdmI	GAANNNNTTC	2 cut(s)	47, 890
PfeI	GAWTC	3 cut(s)	199, 438, 745
PflMI	CCANNNNNTGG	1 cut(s)	654
PkrI	GCNGC	1 cut(s)	769
PleI	GAGTC	3 cut(s)	363, 587, 598
PpsI	GAGTC	3 cut(s)	363, 587, 598
Ppu21I	YACGTR	1 cut(s)	897
PscI	ACATGT	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	540
PspEI	GGTNACC	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	3 cut(s)	645, 700, 729
PspPI	GGNCC	5 cut(s)	18, 163, 534, 709, 727
RseI	CAYNNNNRTG	2 cut(s)	775, 899
SaqAI	TTAA	2 cut(s)	23, 224
SatI	GCNGC	1 cut(s)	768
Sau3AI	GATC	5 cut(s)	116, 122, 236, 453, 791
Sau96I	GGNCC	5 cut(s)	18, 163, 534, 709, 727
SchI	GAGTC	3 cut(s)	364, 587, 598
ScrFI	CCNGG	2 cut(s)	542, 731
SduI	GDGCHC	1 cut(s)	858
SetI	ASST	8 cut(s)	77, 113, 317, 478, 494, 524, 899, 927
SfaNI	GCATC	2 cut(s)	68, 517
SfcI	CTRYAG	2 cut(s)	359, 912
SinI	GGWCC	4 cut(s)	163, 534, 709, 727
SmiMI	CAYNNNNRTG	2 cut(s)	775, 899
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SphI	GCATGC	1 cut(s)	805
Sse9I	AATT	9 cut(s)	29, 60, 84, 268, 376, 394, 479, 686, 722
SseBI	AGGCCT	1 cut(s)	587
SsiI	CCGC	1 cut(s)	782
SspMI	CTAG	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	587
StyD4I	CCNGG	2 cut(s)	540, 729
StyI	CCWWGG	4 cut(s)	150, 282, 311, 879
TaaI	ACNGT	3 cut(s)	229, 774, 843
TaiI	ACGT	1 cut(s)	899
TaqI	TCGA	1 cut(s)	955
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	9 cut(s)	29, 60, 84, 268, 376, 394, 479, 686, 722
TfiI	GAWTC	3 cut(s)	199, 438, 745
Tru1I	TTAA	2 cut(s)	23, 224
Tru9I	TTAA	2 cut(s)	23, 224
TscAI	CASTG	4 cut(s)	162, 234, 246, 846
TseFI	GTSAC	2 cut(s)	36, 306
TseI	GCWGC	1 cut(s)	767
Tsp45I	GTSAC	2 cut(s)	36, 306
TspDTI	ATGAA	2 cut(s)	614, 920
TspRI	CASTG	4 cut(s)	162, 234, 246, 846
Van91I	CCANNNNNTGG	1 cut(s)	654
Vha464I	CTTAAG	1 cut(s)	22
VpaK11BI	GGWCC	4 cut(s)	163, 534, 709, 727
XapI	RAATTY	3 cut(s)	84, 268, 376
XceI	RCATGY	2 cut(s)	131, 805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	2 cut(s)	47, 890
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.