Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006055

Physical Location & Seq

Genomic Coordinates Forward (+)

18260281 .. 18263180

Gene Structure 2900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23380.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAAGGCACTTATTCTCGTTGGAGGTTTTGGAACACGTTTGAGGCCATTGACACTTAGTGTCCCTAAGCCACTTGTTGACTTTGCCAACAAACCCATGATCCTGCATCAGATCGAGGCGCTGAAGGCAATTGGTGTGACTGAAGTGGTTCTGGCTATCAATTACCAACCAGAGGTGATGCTGAATTTCTTAAAAGAGTTTGAGACAAAGGTTGGGATCAAGATCACTTGTTCACAAGAGACTGAACCCCTAGGCACTGCTGGTCCTCTTGCTCTTGCTAGGGACAAACTGATAGACCAATCTGGTGAACCCTTCTTTGTCCTTAACAGTGATGTTATCAGTGAGTACCCACTAAAAGAAATGATTGAATTCCATAAATCCCATGGAGGAGAGGCATCTATAATGGTGACCAAGGTGGATGAGCCATCAAAATATGGAGTGGTGGTTTTGGAAGAGTCTACAGGGAAAGTGGAGAAATTTGTGGAGAAACCAAAATTGTTTGTTGGCAACAAAATCAATGCTGGAATATATTTGTTAAATCCTGAAGTTCTTGATCGTATTCAACTGAGACCAACCTCAATTGAGAAAGAGGTTTTCCCAAAGATTGCATCAGAGAATAAGCTCTTTGCAATGGTCCTCCCAGGGTTTTGGATGGACATTGGACAGCCAAAGGATTATATCACAGGCCTGAGACTGTACTTAGACTCGTTGAGGAAGAAGTCTTCATCTAAGTTGGCCAAAGGCACTCACATCGTGGGAAATGTTTTGGTTGATGAGACTGCTACGATTGGTGAGGGGTGCCTGATTGGACCAGATGTTGCAATTGGTCCCGGTTGTGTGGTCGAATCAGGAGTTAGACTTTCTCGCTGCACAGTAATGCGTGGTGTTCGGATCAAGAAGCATGCTTGCATTTCCGGCAGTATCATTGGGTGGCACTCCACTGTTGGACAATGGGCTCGTGTGGAGAACATGACTATCCTCGGTGAAGATGTTCACGTAAGTGATGAAATCTACAGCAACGGAGGTGTGGTTTTGCCTCACAAAGAAATCAAGTCGAGTATTTTGAAGCCAGAGATTGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004475 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005996 GO:0006073 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008905 GO:0009058 GO:0009059 GO:0009108 GO:0009110 GO:0009250 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0016051 GO:0016053 GO:0016740 GO:0016772 GO:0016779 GO:0019752 GO:0019852 GO:0019853 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042364 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0046394 GO:0046677 GO:0050896 GO:0051186 GO:0051188 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060359 GO:0070568 GO:0071704 GO:0098542 GO:1901576 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110

Pfam Domains

Protein Families

Hexapep NTP_transferase

Protein Analysis

362

Amino Acids

39.56

Weight (kDa)

7.09

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	2 - 233	1.2e-60	Nucleotidyl transferase
NTP_transf_3	PF12804	3 - 137	4.6e-09	MobA-like NTP transferase domain
LbH_EIF2B	PF25084	239 - 337	3e-13	EIF2B subunit epsilon LbH domain
GMPPB_C	PF25087	251 - 360	1.2e-43	GMPPB C-terminal domain
Hexapep	PF00132	261 - 294	2.7e-06	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39770 AT2G39770 AT2G39770 AT3G55590
fragaria_vesca	FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380 FvH4_7g23380
malus_domestica	MD01G1139900.v1.1 MD07G1204200.v1.1
prunus_persica	Prupe.2G240500_v2.0.a1
pyrus_communis	pycom01g16040 pycom07g19080
rosa_chinensis	RchiOBHm_Chr1g0368511
rosa_laevigata	RLG00000027207
rosa_multiflora	Rmu_co8389653.1_g000001 Rmu_sc0006908.1_g000002 Rmu_sc0011394.1_g000010
rosa_roxburghii	Rroxscaffold_4G00288480
rosa_rugosa	Rorug01G0342400 Rorug01G0342500 Rorug01G0342500
rosa_samantha	Rh1AG349800 Rh1BG312900 Rh1CG327700 Rh1DG344400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	798
AccI	GTMKAC	1 cut(s)	458
AclWI	GGATC	3 cut(s)	94, 224, 899
AcoI	YGGCCR	1 cut(s)	735
AcsI	RAATTY	3 cut(s)	184, 368, 476
AcuI	CTGAAG	3 cut(s)	143, 162, 564
AdeI	CACNNNGTG	2 cut(s)	59, 754
AfaI	GTAC	2 cut(s)	347, 698
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	368, 563, 1066
AjnI	CCWGG	1 cut(s)	640
AleI	CACNNNNGTG	1 cut(s)	999
AluBI	AGCT	1 cut(s)	622
AluI	AGCT	1 cut(s)	622
Alw26I	GTCTC	5 cut(s)	197, 233, 562, 685, 770
AlwI	GGATC	3 cut(s)	94, 224, 899
AoxI	GGCC	3 cut(s)	44, 685, 735
ApeKI	GCWGC	1 cut(s)	867
ApoI	RAATTY	3 cut(s)	184, 368, 476
Asp700I	GAANNNNTTC	2 cut(s)	147, 990
AspA2I	CCTAGG	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	4 cut(s)	263, 634, 809, 827
AsuC2I	CCSGG	1 cut(s)	831
AsuHPI	GGTGA	5 cut(s)	187, 317, 418, 803, 995
AvaII	GGWCC	4 cut(s)	263, 634, 809, 827
AvrII	CCTAGG	1 cut(s)	250
BalI	TGGCCA	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	798
BanII	GRGCYC	1 cut(s)	958
BauI	CACGAG	1 cut(s)	957
BbsI	GAAGAC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	854
BccI	CCATC	2 cut(s)	433, 646
BcgI	CGANNNNNNTGC	2 cut(s)	733, 767
BciT130I	CCWGG	1 cut(s)	642
BcnI	CCSGG	1 cut(s)	831
BcoDI	GTCTC	5 cut(s)	197, 233, 562, 685, 770
BfaI	CTAG	2 cut(s)	251, 279
BfmI	CTRYAG	2 cut(s)	459, 1012
BfoI	RGCGCY	1 cut(s)	122
BisI	GCNGC	1 cut(s)	868
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	869
Bme1390I	CCNGG	2 cut(s)	642, 831
Bme18I	GGWCC	4 cut(s)	263, 634, 809, 827
BmgT120I	GGNCC	4 cut(s)	263, 634, 809, 827
BmiI	GGNNCC	2 cut(s)	800, 829
BmrFI	CCNGG	2 cut(s)	642, 831
BmsI	GCATC	4 cut(s)	115, 168, 404, 617
BpiI	GAAGAC	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	831
BsaAI	YACGTR	1 cut(s)	997
BsaBI	GATNNNNATC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	562
BsaJI	CCNNGG	6 cut(s)	250, 382, 411, 640, 641, 979
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 1014, 1044
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	636
Bse8I	GATNNNNATC	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	6 cut(s)	250, 382, 411, 640, 641, 979
BseGI	GGATG	2 cut(s)	424, 657
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	2 cut(s)	557, 680
BseRI	GAGGAG	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	853
BshFI	GGCC	3 cut(s)	46, 687, 737
BshNI	GGYRCC	1 cut(s)	798
BsiSI	CCGG	2 cut(s)	831, 915
BslFI	GGGAC	3 cut(s)	47, 296, 813
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	5 cut(s)	197, 233, 562, 685, 770
BsmFI	GGGAC	3 cut(s)	47, 296, 813
BsnI	GGCC	3 cut(s)	46, 687, 737
Bso31I	GGTCTC	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	958
Bsp143I	GATC	6 cut(s)	99, 111, 216, 222, 553, 891
Bsp19I	CCATGG	1 cut(s)	382
BspANI	GGCC	3 cut(s)	46, 687, 737
BspCNI	CTCAG	2 cut(s)	558, 681
BspLI	GGNNCC	2 cut(s)	800, 829
BspPI	GGATC	3 cut(s)	94, 224, 899
BspT107I	GGYRCC	1 cut(s)	798
BspTNI	GGTCTC	1 cut(s)	562
BsrDI	GCAATG	1 cut(s)	636
BssECI	CCNNGG	6 cut(s)	250, 382, 411, 640, 641, 979
BssMI	GATC	6 cut(s)	99, 111, 216, 222, 553, 891
BssSI	CACGAG	1 cut(s)	957
BssT1I	CCWWGG	3 cut(s)	250, 382, 411
Bst2BI	CACGAG	1 cut(s)	957
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	4 cut(s)	329, 696, 874, 943
Bst6I	CTCTTC	1 cut(s)	447
BstBAI	YACGTR	1 cut(s)	997
BstC8I	GCNNGC	2 cut(s)	903, 907
BstDEI	CTNAG	6 cut(s)	56, 66, 566, 689, 700, 729
BstDSI	CCRYGG	1 cut(s)	382
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	424, 657
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	6 cut(s)	102, 114, 219, 225, 556, 894
BstMAI	GTCTC	5 cut(s)	197, 233, 562, 685, 770
BstMBI	GATC	6 cut(s)	99, 111, 216, 222, 553, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 915
BstNI	CCWGG	1 cut(s)	642
BstNSI	RCATGY	1 cut(s)	905
BstPI	GGTNACC	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	640, 829
BstSFI	CTRYAG	2 cut(s)	459, 1012
BstV1I	GCAGC	1 cut(s)	854
BstV2I	GAAGAC	1 cut(s)	714
BstXI	CCANNNNNNTGG	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	46, 687, 737
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	424, 657
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	4 cut(s)	255, 334, 346, 939
Cac8I	GCNNGC	2 cut(s)	903, 907
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	263, 634, 809, 827
Csp6I	GTAC	2 cut(s)	346, 697
CviAII	CATG	4 cut(s)	97, 383, 902, 970
CviQI	GTAC	2 cut(s)	346, 697
DdeI	CTNAG	6 cut(s)	56, 66, 566, 689, 700, 729
DpnI	GATC	6 cut(s)	101, 113, 218, 224, 555, 893
DpnII	GATC	6 cut(s)	99, 111, 216, 222, 553, 891
DraIII	CACNNNGTG	2 cut(s)	59, 754
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco130I	CCWWGG	3 cut(s)	250, 382, 411
Eco147I	AGGCCT	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	958
Eco31I	GGTCTC	1 cut(s)	562
Eco47I	GGWCC	4 cut(s)	263, 634, 809, 827
Eco57I	CTGAAG	3 cut(s)	143, 162, 564
Eco91I	GGTNACC	1 cut(s)	406
EcoO65I	GGTNACC	1 cut(s)	406
EcoRI	GAATTC	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	640
EcoT14I	CCWWGG	3 cut(s)	250, 382, 411
EcoT38I	GRGCYC	1 cut(s)	958
ErhI	CCWWGG	3 cut(s)	250, 382, 411
FaeI	CATG	4 cut(s)	100, 386, 905, 973
FaqI	GGGAC	3 cut(s)	47, 296, 813
FatI	CATG	4 cut(s)	96, 382, 901, 969
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	868
FokI	GGATG	2 cut(s)	431, 664
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	1 cut(s)	868
FspBI	CTAG	2 cut(s)	251, 279
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	868
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	46, 687, 737
HapII	CCGG	2 cut(s)	831, 915
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	4 cut(s)	100, 386, 905, 973
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	455, 704, 845
HpaII	CCGG	2 cut(s)	831, 915
HphI	GGTGA	5 cut(s)	187, 317, 418, 803, 995
Hpy166II	GTNNAC	5 cut(s)	79, 233, 308, 459, 994
Hpy188I	TCNGA	3 cut(s)	111, 613, 891
Hpy188III	TCNNGA	5 cut(s)	220, 542, 551, 849, 895
Hpy8I	GTNNAC	5 cut(s)	79, 233, 308, 459, 994
HpyAV	CCTTC	2 cut(s)	118, 322
HpyCH4III	ACNGT	4 cut(s)	329, 696, 874, 943
HpyCH4IV	ACGT	2 cut(s)	37, 996
HpyCH4V	TGCA	6 cut(s)	106, 608, 629, 821, 870, 909
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 915
HpyF3I	CTNAG	6 cut(s)	56, 66, 566, 689, 700, 729
HpySE526I	ACGT	2 cut(s)	37, 996
Hsp92II	CATG	4 cut(s)	100, 386, 905, 973
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	6 cut(s)	99, 111, 216, 222, 553, 891
Lsp1109I	GCAGC	1 cut(s)	854
LweI	GCATC	4 cut(s)	115, 168, 404, 617
MaeI	CTAG	2 cut(s)	251, 279
MaeII	ACGT	2 cut(s)	37, 996
MaeIII	GTNAC	2 cut(s)	136, 406
MalI	GATC	6 cut(s)	101, 113, 218, 224, 555, 893
MboI	GATC	6 cut(s)	99, 111, 216, 222, 553, 891
MboII	GAAGA	4 cut(s)	464, 714, 727, 998
MfeI	CAATTG	3 cut(s)	129, 579, 822
MhlI	GDGCHC	1 cut(s)	958
MlsI	TGGCCA	1 cut(s)	737
MluCI	AATT	8 cut(s)	129, 160, 184, 368, 476, 494, 579, 822
MluNI	TGGCCA	1 cut(s)	737
MlyI	GAGTC	2 cut(s)	464, 698
MmeI	TCCRAC	1 cut(s)	925
Mox20I	TGGCCA	1 cut(s)	737
MroXI	GAANNNNTTC	2 cut(s)	147, 990
MscI	TGGCCA	1 cut(s)	737
MseI	TTAA	3 cut(s)	191, 324, 536
MslI	CAYNNNNRTG	2 cut(s)	875, 999
Msp20I	TGGCCA	1 cut(s)	737
MspI	CCGG	2 cut(s)	831, 915
MspR9I	CCNGG	2 cut(s)	642, 831
MunI	CAATTG	3 cut(s)	129, 579, 822
MvaI	CCWGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	2 cut(s)	125, 915
NciI	CCSGG	1 cut(s)	831
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	6 cut(s)	99, 111, 216, 222, 553, 891
NlaIII	CATG	4 cut(s)	100, 386, 905, 973
NlaIV	GGNNCC	2 cut(s)	800, 829
NmuCI	GTSAC	2 cut(s)	136, 406
NspI	RCATGY	1 cut(s)	905
OliI	CACNNNNGTG	1 cut(s)	999
PaeI	GCATGC	1 cut(s)	905
PasI	CCCWGGG	1 cut(s)	641
PceI	AGGCCT	1 cut(s)	687
PdmI	GAANNNNTTC	2 cut(s)	147, 990
PfeI	GAWTC	1 cut(s)	845
PkrI	GCNGC	1 cut(s)	869
PleI	GAGTC	2 cut(s)	463, 698
PpsI	GAGTC	2 cut(s)	463, 698
Ppu21I	YACGTR	1 cut(s)	997
Psp6I	CCWGG	1 cut(s)	640
PspEI	GGTNACC	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	800, 829
PspPI	GGNCC	4 cut(s)	263, 634, 809, 827
RsaI	GTAC	2 cut(s)	347, 698
RsaNI	GTAC	2 cut(s)	346, 697
RseI	CAYNNNNRTG	2 cut(s)	875, 999
SaqAI	TTAA	3 cut(s)	191, 324, 536
SatI	GCNGC	1 cut(s)	868
Sau3AI	GATC	6 cut(s)	99, 111, 216, 222, 553, 891
Sau96I	GGNCC	4 cut(s)	263, 634, 809, 827
SchI	GAGTC	2 cut(s)	464, 698
ScrFI	CCNGG	2 cut(s)	642, 831
SduI	GDGCHC	1 cut(s)	958
SfaNI	GCATC	4 cut(s)	115, 168, 404, 617
SfcI	CTRYAG	2 cut(s)	459, 1012
SinI	GGWCC	4 cut(s)	263, 634, 809, 827
SmiMI	CAYNNNNRTG	2 cut(s)	875, 999
SphI	GCATGC	1 cut(s)	905
Sse9I	AATT	8 cut(s)	129, 160, 184, 368, 476, 494, 579, 822
SseBI	AGGCCT	1 cut(s)	687
SspMI	CTAG	2 cut(s)	251, 279
StuI	AGGCCT	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	640, 829
StyI	CCWWGG	3 cut(s)	250, 382, 411
TaaI	ACNGT	4 cut(s)	329, 696, 874, 943
TaiI	ACGT	2 cut(s)	40, 999
TaqI	TCGA	3 cut(s)	114, 843, 1055
TasI	AATT	8 cut(s)	129, 160, 184, 368, 476, 494, 579, 822
TatI	WGTACW	1 cut(s)	696
TfiI	GAWTC	1 cut(s)	845
Tru1I	TTAA	3 cut(s)	191, 324, 536
Tru9I	TTAA	3 cut(s)	191, 324, 536
TscAI	CASTG	4 cut(s)	262, 334, 346, 946
TseFI	GTSAC	2 cut(s)	136, 406
TseI	GCWGC	1 cut(s)	867
Tsp45I	GTSAC	2 cut(s)	136, 406
TspDTI	ATGAA	3 cut(s)	17, 714, 1020
TspGWI	ACGGA	1 cut(s)	1035
TspRI	CASTG	4 cut(s)	262, 334, 346, 946
VpaK11BI	GGWCC	4 cut(s)	263, 634, 809, 827
XapI	RAATTY	3 cut(s)	184, 368, 476
XceI	RCATGY	1 cut(s)	905
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmaJI	CCTAGG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	458
XmnI	GAANNNNTTC	2 cut(s)	147, 990
XspI	CTAG	2 cut(s)	251, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.