Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013172

Physical Location & Seq

Genomic Coordinates Reverse (-)

16683832 .. 16686815

Gene Structure 2984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTCGGACGCTTTGATCAATGGATTGGCTGGAGCTGGTGGTGGGATCATTGCTCAGCTTCTCACTTATCCTCTTCAAACTGTAAATACGCGCCAACAGACGGAGCGGGATCTGAAGAGGGAGAAGAGGAAACTTGGAACTATCGAACACATGTGTCAGGTTGTCAAACAAGAAGGATGGGAGAGGTTATATGGTGGATTGGCGCCGTCTCTTGCTGGAACGGCTGCATCACAGGGTGTGTACTACTACTTCTACCAAGTGTTTCGGAATCGAGCTGAAGCCACAGCTCTTGCACGGAAGAAGAAAGGTTTGGGTGACGGATCAGTTGGGATGTTTGCTTCACTTTTAGTGGCTGCCTTTGCCGGATCGGTTAATGTTCTTATGACGAATCCGATTTGGGTGATTGTTACGCGTATGCAGACCCACAGAAAAATGACAAAAGATCAAACAGCGGCCCCCGAGTCACCTTCTTCTAATGCAGAAGCTCTGGTTGCTGTTGAGCCGCGTCCATATGGGACCTTTAATACGATTCGAGAGGTTTACGATGAAGCTGGAATAACTGGCTTCTGGAAAGGTGTAATTCCAACATTGATCATGGTAAGTAATCCGTCAATGCAATTTATGTTGTACGAGACAATGCTAACCAAGCTGAAGAAAAAGCGTGCCTTGAAGGGTAGCAACAACGTTACCGCTTTGGAGACATTTCTTCTCGGAGCTGTGGCGAAACTCGGAGCTACAGTCACAACTTACCCTCTCTTGGTTGTAAAGTCGCGACTTCAAGCCAAACAGGTCACAACAGGGGACAAAAGACAACAATACAAAGGAACATTGGACGCGATTCTGAAAATGATTCGATATGAAGGGCTTTACGGGTTTTATAAAGGGATGAGCACAAAGATTGTGCAGAGCGTTTTAGCTGCTGCGGTTCTGTTCATGATCAAGGAAGAGCTTGTCAAGGGAGCTAAGCTGTTGCTCTCAAACGCTACCTCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005779 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015230 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015858 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032535 GO:0034220 GO:0035349 GO:0035350 GO:0035352 GO:0042221 GO:0042493 GO:0042579 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044610 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0051724 GO:0055085 GO:0065007 GO:0065008 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0071840 GO:0072530 GO:0080121 GO:0080122 GO:0090066 GO:0098588 GO:0098655 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

331

Amino Acids

36.21

Weight (kDa)

9.87

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 90	6.8e-16	Mitochondrial carrier protein
Mito_carr	PF00153	110 - 220	1.3e-18	Mitochondrial carrier protein
Mito_carr	PF00153	229 - 318	1.9e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39970
fragaria_vesca	FvH4_7g24040 FvH4_7g24040
malus_domestica	MD01G1147600.v1.1 MD07G1214400.v1.1
prunus_persica	Prupe.2G246400_v2.0.a1
pyrus_communis	pycom07g19690
rosa_chinensis	RchiOBHm_Chr1g0369431
rosa_laevigata	RLG00000027131
rosa_multiflora	Rmu_sc0003612.1_g000019 Rmu_sc0006332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287660
rosa_rugosa	Rorug01G0350100
rosa_samantha	Rh1AG357700 Rh1BG321800 Rh1CG335500 Rh1DG352400
rosa_wichuraiana	Rw1G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	879
AccB1I	GGYRCC	1 cut(s)	202
AccBSI	CCGCTC	1 cut(s)	106
AccII	CGCG	5 cut(s)	91, 412, 505, 772, 836
AciI	CCGC	5 cut(s)	106, 452, 503, 690, 923
AclI	AACGTT	1 cut(s)	684
AclWI	GGATC	4 cut(s)	53, 117, 328, 373
AcuI	CTGAAG	3 cut(s)	134, 297, 671
AcyI	GRCGYC	1 cut(s)	203
AdeI	CACNNNGTG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	242, 629
AfiI	CCNNNNNNNGG	2 cut(s)	100, 757
AflIII	ACRYGT	2 cut(s)	150, 410
AgsI	TTSAA	3 cut(s)	77, 670, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
Alw21I	GWGCWC	1 cut(s)	893
Alw26I	GTCTC	3 cut(s)	213, 626, 692
AlwI	GGATC	4 cut(s)	53, 117, 328, 373
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	4 cut(s)	224, 353, 917, 920
AspLEI	GCGC	2 cut(s)	93, 205
AspS9I	GGNCC	2 cut(s)	454, 516
AsuHPI	GGTGA	3 cut(s)	326, 412, 456
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	202
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
Bbv12I	GWGCWC	1 cut(s)	893
BbvI	GCAGC	4 cut(s)	211, 340, 904, 907
BccI	CCATC	1 cut(s)	171
BceAI	ACGGC	2 cut(s)	190, 237
BclI	TGATCA	3 cut(s)	15, 591, 936
BcoDI	GTCTC	3 cut(s)	213, 626, 692
BfaI	CTAG	1 cut(s)	990
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	6 cut(s)	225, 354, 453, 503, 918, 921
BlpI	GCTNAGC	2 cut(s)	54, 963
BlsI	GCNGC	6 cut(s)	226, 355, 454, 504, 919, 922
Bme18I	GGWCC	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	454, 516
BmiI	GGNNCC	3 cut(s)	204, 456, 517
BmsI	GCATC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	51
Bpu1102I	GCTNAGC	2 cut(s)	54, 963
BsaHI	GRCGYC	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 757
Bse1I	ACTGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	48
BseGI	GGATG	3 cut(s)	182, 336, 891
BseLI	CCNNNNNNNGG	2 cut(s)	100, 757
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	565
BseXI	GCAGC	4 cut(s)	211, 340, 904, 907
BsgI	GTGCAG	1 cut(s)	923
Bsh1236I	CGCG	5 cut(s)	91, 412, 505, 772, 836
BshFI	GGCC	1 cut(s)	455
BshNI	GGYRCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	893
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	2 cut(s)	529, 815
BslI	CCNNNNNNNGG	2 cut(s)	100, 757
BsmAI	GTCTC	3 cut(s)	213, 626, 692
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	529, 815
BsnI	GGCC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	893
Bsp143I	GATC	8 cut(s)	15, 45, 109, 320, 365, 442, 591, 936
Bsp1720I	GCTNAGC	2 cut(s)	54, 963
Bsp68I	TCGCGA	1 cut(s)	772
BspACI	CCGC	5 cut(s)	106, 452, 503, 690, 923
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	5 cut(s)	91, 412, 505, 772, 836
BspHI	TCATGA	1 cut(s)	933
BspLI	GGNNCC	3 cut(s)	204, 456, 517
BspPI	GGATC	4 cut(s)	53, 117, 328, 373
BspQI	GCTCTTC	1 cut(s)	939
BspT107I	GGYRCC	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	565
BssMI	GATC	8 cut(s)	15, 45, 109, 320, 365, 442, 591, 936
BssNI	GRCGYC	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	82, 739
Bst6I	CTCTTC	4 cut(s)	78, 110, 119, 939
BstACI	GRCGYC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	2 cut(s)	54, 963
BstF5I	GGATG	3 cut(s)	182, 336, 891
BstFNI	CGCG	5 cut(s)	91, 412, 505, 772, 836
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	93, 205
BstKTI	GATC	8 cut(s)	18, 48, 112, 323, 368, 445, 594, 939
BstMAI	GTCTC	3 cut(s)	213, 626, 692
BstMBI	GATC	8 cut(s)	15, 45, 109, 320, 365, 442, 591, 936
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 359, 491, 646
BstNSI	RCATGY	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	735
BstUI	CGCG	5 cut(s)	91, 412, 505, 772, 836
BstV1I	GCAGC	4 cut(s)	211, 340, 904, 907
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	455
BtsCI	GGATG	3 cut(s)	182, 336, 891
BtuMI	TCGCGA	1 cut(s)	772
Cac8I	GCNNGC	1 cut(s)	663
CciI	TCATGA	1 cut(s)	933
CfoI	GCGC	2 cut(s)	93, 205
Cfr13I	GGNCC	2 cut(s)	454, 516
CseI	GACGC	3 cut(s)	17, 494, 842
Csp6I	GTAC	2 cut(s)	241, 628
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	3 cut(s)	151, 595, 934
CviQI	GTAC	2 cut(s)	241, 628
DdeI	CTNAG	2 cut(s)	54, 963
DinI	GGCGCC	1 cut(s)	204
DpnI	GATC	8 cut(s)	17, 47, 111, 322, 367, 444, 593, 938
DpnII	GATC	8 cut(s)	15, 45, 109, 320, 365, 442, 591, 936
DraIII	CACNNNGTG	1 cut(s)	236
Eam1104I	CTCTTC	4 cut(s)	78, 110, 119, 939
EarI	CTCTTC	4 cut(s)	78, 110, 119, 939
Eco47I	GGWCC	1 cut(s)	516
Eco57I	CTGAAG	3 cut(s)	134, 297, 671
Eco88I	CYCGRG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	516
EgeI	GGCGCC	1 cut(s)	204
EheI	GGCGCC	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	3 cut(s)	154, 598, 937
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FaqI	GGGAC	2 cut(s)	529, 815
FatI	CATG	3 cut(s)	150, 594, 933
FauI	CCCGC	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	511
FbaI	TGATCA	3 cut(s)	15, 591, 936
Fnu4HI	GCNGC	6 cut(s)	225, 354, 453, 503, 918, 921
FokI	GGATG	3 cut(s)	189, 343, 898
Fsp4HI	GCNGC	6 cut(s)	225, 354, 453, 503, 918, 921
FspBI	CTAG	1 cut(s)	990
GlaI	GCGC	2 cut(s)	92, 204
GluI	GCNGC	6 cut(s)	225, 354, 453, 503, 918, 921
GsuI	CTGGAG	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	1 cut(s)	363
HgaI	GACGC	3 cut(s)	17, 494, 842
HhaI	GCGC	2 cut(s)	93, 205
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	154, 598, 937
Hin6I	GCGC	2 cut(s)	91, 203
HinP1I	GCGC	2 cut(s)	91, 203
HinfI	GANTC	6 cut(s)	268, 388, 461, 529, 838, 850
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	3 cut(s)	326, 412, 456
Hpy166II	GTNNAC	2 cut(s)	241, 541
Hpy188I	TCNGA	7 cut(s)	7, 114, 267, 393, 713, 731, 843
Hpy188III	TCNNGA	4 cut(s)	533, 568, 771, 934
Hpy8I	GTNNAC	2 cut(s)	241, 541
HpyAV	CCTTC	4 cut(s)	167, 477, 664, 854
HpyCH4III	ACNGT	2 cut(s)	82, 739
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	6 cut(s)	227, 293, 418, 479, 616, 904
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 359, 491, 646
HpyF3I	CTNAG	2 cut(s)	54, 963
HpySE526I	ACGT	1 cut(s)	684
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	154, 598, 937
HspAI	GCGC	2 cut(s)	91, 203
KasI	GGCGCC	1 cut(s)	202
Ksp22I	TGATCA	3 cut(s)	15, 591, 936
Kzo9I	GATC	8 cut(s)	15, 45, 109, 320, 365, 442, 591, 936
LguI	GCTCTTC	1 cut(s)	939
LmnI	GCTCC	5 cut(s)	32, 103, 713, 731, 959
Lsp1109I	GCAGC	4 cut(s)	211, 340, 904, 907
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	990
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	6 cut(s)	314, 406, 462, 685, 739, 790
MalI	GATC	8 cut(s)	17, 47, 111, 322, 367, 444, 593, 938
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	8 cut(s)	15, 45, 109, 320, 365, 442, 591, 936
MboII	GAAGA	9 cut(s)	65, 127, 136, 310, 313, 462, 664, 698, 956
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	893
MluCI	AATT	2 cut(s)	579, 617
MluI	ACGCGT	1 cut(s)	410
Mly113I	GGCGCC	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	608
MnlI	CCTC	6 cut(s)	81, 111, 120, 177, 529, 762
MseI	TTAA	2 cut(s)	372, 522
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	363
MvnI	CGCG	5 cut(s)	91, 412, 505, 772, 836
MwoI	GCNNNNNNNGC	4 cut(s)	221, 359, 491, 646
NarI	GGCGCC	1 cut(s)	203
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	8 cut(s)	15, 45, 109, 320, 365, 442, 591, 936
NlaIII	CATG	3 cut(s)	154, 598, 937
NlaIV	GGNNCC	3 cut(s)	204, 456, 517
NmuCI	GTSAC	4 cut(s)	314, 462, 739, 790
NruI	TCGCGA	1 cut(s)	772
NspI	RCATGY	1 cut(s)	154
PagI	TCATGA	1 cut(s)	933
PciI	ACATGT	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	939
PfeI	GAWTC	5 cut(s)	268, 388, 529, 838, 850
PkrI	GCNGC	6 cut(s)	226, 355, 454, 504, 919, 922
PleI	GAGTC	1 cut(s)	469
PluTI	GGCGCC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	469
PpuMI	RGGWCCY	1 cut(s)	516
PscI	ACATGT	1 cut(s)	150
PsiI	TTATAA	1 cut(s)	879
Psp1406I	AACGTT	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	516
PspN4I	GGNNCC	3 cut(s)	204, 456, 517
PspPI	GGNCC	2 cut(s)	454, 516
PspPPI	RGGWCCY	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	109
RruI	TCGCGA	1 cut(s)	772
RsaI	GTAC	2 cut(s)	242, 629
RsaNI	GTAC	2 cut(s)	241, 628
SapI	GCTCTTC	1 cut(s)	939
SaqAI	TTAA	2 cut(s)	372, 522
SatI	GCNGC	6 cut(s)	225, 354, 453, 503, 918, 921
Sau3AI	GATC	8 cut(s)	15, 45, 109, 320, 365, 442, 591, 936
Sau96I	GGNCC	2 cut(s)	454, 516
SchI	GAGTC	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	893
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	735
SfoI	GGCGCC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	516
Sse9I	AATT	2 cut(s)	579, 617
SsiI	CCGC	5 cut(s)	106, 452, 503, 690, 923
SspDI	GGCGCC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	990
TaaI	ACNGT	2 cut(s)	82, 739
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	4 cut(s)	144, 271, 532, 853
TasI	AATT	2 cut(s)	579, 617
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	2 cut(s)	455, 505
TfiI	GAWTC	5 cut(s)	268, 388, 529, 838, 850
Tru1I	TTAA	2 cut(s)	372, 522
Tru9I	TTAA	2 cut(s)	372, 522
TseFI	GTSAC	4 cut(s)	314, 462, 739, 790
TseI	GCWGC	4 cut(s)	224, 353, 917, 920
Tsp45I	GTSAC	4 cut(s)	314, 462, 739, 790
TspDTI	ATGAA	3 cut(s)	561, 873, 922
TspGWI	ACGGA	4 cut(s)	116, 310, 333, 597
VpaK11BI	GGWCC	1 cut(s)	516
XceI	RCATGY	1 cut(s)	154
XspI	CTAG	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.