Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013172

Physical Location & Seq

Genomic Coordinates Reverse (-)

29160903 .. 29165523

Gene Structure 4621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1214400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCCGACGCTTTGATCAATGGACTCGCCGGAGCTGGCGGCGGGATCATCGCCCAGCTCATCACCTATCCTCTTCAGACTGTGAATACTCGTCAACAAACAGACCGTGATCTGAAGAAGGAGAAGAAGAAGCTCGGAACTGTGGAGCAAATATGTCAGGTTATAAAAAATGAAGGATGGGAACGGTTGTATGGAGGTTTGACGCCATCGTTGGTGGGCACGGCAGCATCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACAAGGCTGAAGCTGCTGCTCTTGAACGGAGGAAGATGGGGGTTGGTGATGGGTCTGTCGGAATGCTCTCTTCACTTTTGGTTGCTGCATTATCTGGGTGCGTGAATGTGCTGTTCACGAATCCTATATGGGTAATTGTTACGCGTATGCAGACTCATAAAAAATCCTCCAAGTCCCAGCCTGGTCAGGAGCTATTAACTGCTCCAGATGAAGAAATCCTTGCTGCAGCTGAGCCTCCTCCATTCGGCACGGCACATGTGATTCAGGAAGTTTATGATGAAGGTGGAGTTTTCGGCTTCTGGAGAGGTGTTTTCCCGACATTGATCATGGTGAGTAATCCTTCCATGCAATTTATGCTGTATGAAACTATGCTGAAGAAGCTGAAGCAAAGACGTGCCTTGAATAAGAAGGGTAACAACGGGGTTACTGCTTTAGAGATATTTCTTCTTGGTGCTTTGGCGAAACTAGGGGCTACGGTTGTGACATATCCTCTTCTAGTTGTGAAGTCGAGGCTTCAAGCAAAACAGGTTACAAATGGTGACAAAAGGCAACACTATAAAGGCACATCTGATGCTATCTTAAAGATGATTCGCTATGAAGGATTATACGGGTTTTACAAAGGGATGGGAACGAAAATAGTACAAAGTGTACTTGCAGCTGCCGTTCTGTTCATGATCAAGGAGGAACTTGTCAAGGGTGCTCGGTTCTTGCTCGCTAGCAAAGTAAAGTCAAAGCCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005779 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015230 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015858 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032535 GO:0034220 GO:0035349 GO:0035350 GO:0035352 GO:0042221 GO:0042493 GO:0042579 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044610 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0051724 GO:0055085 GO:0065007 GO:0065008 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0071840 GO:0072530 GO:0080121 GO:0080122 GO:0090066 GO:0098588 GO:0098655 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

337

Amino Acids

36.81

Weight (kDa)

9.75

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 90	1.7e-17	Mitochondrial carrier protein
Mito_carr	PF00153	110 - 219	1.8e-18	Mitochondrial carrier protein
Mito_carr	PF00153	232 - 321	1.2e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39970
fragaria_vesca	FvH4_7g24040 FvH4_7g24040
malus_domestica	MD01G1147600.v1.1 MD07G1214400.v1.1
prunus_persica	Prupe.2G246400_v2.0.a1
pyrus_communis	pycom07g19690
rosa_chinensis	RchiOBHm_Chr1g0369431
rosa_laevigata	RLG00000027131
rosa_multiflora	Rmu_sc0003612.1_g000019 Rmu_sc0006332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287660
rosa_rugosa	Rorug01G0350100
rosa_samantha	Rh1AG357700 Rh1BG321800 Rh1CG335500 Rh1DG352400
rosa_wichuraiana	Rw1G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AccII	CGCG	1 cut(s)	412
AciI	CCGC	2 cut(s)	39, 42
AclWI	GGATC	1 cut(s)	53
AcuI	CTGAAG	5 cut(s)	59, 134, 297, 662, 671
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	2 cut(s)	909, 918
AfiI	CCNNNNNNNGG	1 cut(s)	512
AflIII	ACRYGT	2 cut(s)	410, 523
AgsI	TTSAA	3 cut(s)	293, 670, 785
AjiI	CACGTC	1 cut(s)	662
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	8 cut(s)	35, 58, 133, 281, 460, 497, 649, 926
AluI	AGCT	8 cut(s)	35, 58, 133, 281, 460, 497, 649, 926
Alw21I	GWGCWC	1 cut(s)	970
AlwI	GGATC	1 cut(s)	53
ApeKI	GCWGC	8 cut(s)	224, 281, 284, 353, 491, 494, 923, 926
AsuHPI	GGTGA	4 cut(s)	55, 326, 610, 818
AsuNHI	GCTAGC	1 cut(s)	983
BaeGI	GKGCMC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	970
BbvI	GCAGC	8 cut(s)	236, 268, 271, 340, 478, 506, 913, 935
BccI	CCATC	5 cut(s)	171, 214, 298, 311, 886
BceAI	ACGGC	3 cut(s)	237, 534, 914
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	3 cut(s)	15, 591, 942
BfaI	CTAG	3 cut(s)	734, 764, 984
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	9 cut(s)	40, 225, 282, 285, 354, 492, 495, 924, 927
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	9 cut(s)	41, 226, 283, 286, 355, 493, 496, 925, 928
Bme1390I	CCNGG	1 cut(s)	450
BmgBI	CACGTC	1 cut(s)	662
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	2 cut(s)	236, 829
BmtI	GCTAGC	1 cut(s)	987
BpmI	CTGGAG	2 cut(s)	456, 589
Bpu1102I	GCTNAGC	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	450
BseGI	GGATG	2 cut(s)	182, 897
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMII	CTCAG	2 cut(s)	245, 489
BseRI	GAGGAG	1 cut(s)	495
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	8 cut(s)	236, 268, 271, 340, 478, 506, 913, 935
BseYI	CCCAGC	2 cut(s)	54, 444
Bsh1236I	CGCG	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	970
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	221, 970
Bsp143I	GATC	5 cut(s)	15, 45, 109, 591, 942
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	2 cut(s)	39, 42
BspCNI	CTCAG	2 cut(s)	244, 490
BspFNI	CGCG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	939
BspMAI	CTGCAG	1 cut(s)	496
BspOI	GCTAGC	1 cut(s)	987
BspPI	GGATC	1 cut(s)	53
BssMI	GATC	5 cut(s)	15, 45, 109, 591, 942
BssNI	GRCGYC	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	5 cut(s)	82, 107, 142, 186, 745
Bst6I	CTCTTC	3 cut(s)	78, 343, 765
BstACI	GRCGYC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	622
BstC8I	GCNNGC	3 cut(s)	37, 981, 985
BstDEI	CTNAG	2 cut(s)	231, 498
BstF5I	GGATG	2 cut(s)	182, 897
BstFNI	CGCG	1 cut(s)	412
BstKTI	GATC	5 cut(s)	18, 48, 112, 594, 945
BstMBI	GATC	5 cut(s)	15, 45, 109, 591, 942
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 622, 646
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	8 cut(s)	236, 268, 271, 340, 478, 506, 913, 935
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	182, 897
Cac8I	GCNNGC	3 cut(s)	37, 981, 985
CciI	TCATGA	1 cut(s)	939
CseI	GACGC	2 cut(s)	17, 211
Csp6I	GTAC	2 cut(s)	908, 917
CviAII	CATG	4 cut(s)	524, 595, 613, 940
CviQI	GTAC	2 cut(s)	908, 917
DdeI	CTNAG	2 cut(s)	231, 498
DpnI	GATC	5 cut(s)	17, 47, 111, 593, 944
DpnII	GATC	5 cut(s)	15, 45, 109, 591, 942
Eam1104I	CTCTTC	3 cut(s)	78, 343, 765
EarI	CTCTTC	3 cut(s)	78, 343, 765
Eco57I	CTGAAG	5 cut(s)	59, 134, 297, 662, 671
EcoRII	CCWGG	1 cut(s)	448
FaeI	CATG	4 cut(s)	527, 598, 616, 943
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	4 cut(s)	523, 594, 612, 939
FauI	CCCGC	1 cut(s)	35
FbaI	TGATCA	3 cut(s)	15, 591, 942
Fnu4HI	GCNGC	9 cut(s)	40, 225, 282, 285, 354, 492, 495, 924, 927
FokI	GGATG	2 cut(s)	189, 904
Fsp4HI	GCNGC	9 cut(s)	40, 225, 282, 285, 354, 492, 495, 924, 927
FspBI	CTAG	3 cut(s)	734, 764, 984
GluI	GCNGC	9 cut(s)	40, 225, 282, 285, 354, 492, 495, 924, 927
GsaI	CCCAGC	2 cut(s)	58, 448
GsuI	CTGGAG	2 cut(s)	456, 589
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	2 cut(s)	17, 211
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	527, 598, 616, 943
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HinfI	GANTC	5 cut(s)	24, 388, 421, 529, 856
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	4 cut(s)	55, 326, 610, 818
Hpy166II	GTNNAC	4 cut(s)	95, 241, 384, 917
Hpy188I	TCNGA	6 cut(s)	7, 78, 114, 137, 329, 838
Hpy188III	TCNNGA	9 cut(s)	265, 290, 385, 455, 473, 533, 568, 583, 940
Hpy8I	GTNNAC	4 cut(s)	95, 241, 384, 917
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	6 cut(s)	112, 167, 542, 618, 670, 860
HpyCH4III	ACNGT	5 cut(s)	82, 107, 142, 186, 745
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	5 cut(s)	356, 418, 494, 616, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 622, 646
HpyF3I	CTNAG	2 cut(s)	231, 498
HpySE526I	ACGT	1 cut(s)	661
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	527, 598, 616, 943
Ksp22I	TGATCA	3 cut(s)	15, 591, 942
Kzo9I	GATC	5 cut(s)	15, 45, 109, 591, 942
LmnI	GCTCC	4 cut(s)	32, 145, 457, 475
Lsp1109I	GCAGC	8 cut(s)	236, 268, 271, 340, 478, 506, 913, 935
LweI	GCATC	2 cut(s)	236, 829
MaeI	CTAG	3 cut(s)	734, 764, 984
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	6 cut(s)	406, 680, 691, 748, 796, 806
MalI	GATC	5 cut(s)	17, 47, 111, 593, 944
MboI	GATC	5 cut(s)	15, 45, 109, 591, 942
MhlI	GDGCHC	2 cut(s)	221, 970
MluCI	AATT	2 cut(s)	402, 617
MluI	ACGCGT	1 cut(s)	410
MlyI	GAGTC	2 cut(s)	18, 415
MmeI	TCCRAC	2 cut(s)	30, 307
MseI	TTAA	2 cut(s)	464, 848
MspA1I	CMGCKG	2 cut(s)	497, 926
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	3 cut(s)	281, 622, 646
NdeII	GATC	5 cut(s)	15, 45, 109, 591, 942
NheI	GCTAGC	1 cut(s)	983
NlaIII	CATG	4 cut(s)	527, 598, 616, 943
NmuCI	GTSAC	2 cut(s)	748, 806
NspI	RCATGY	1 cut(s)	527
PagI	TCATGA	1 cut(s)	939
PciI	ACATGT	1 cut(s)	523
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	388, 529, 856
PkrI	GCNGC	9 cut(s)	41, 226, 283, 286, 355, 493, 496, 925, 928
PleI	GAGTC	2 cut(s)	18, 415
PpsI	GAGTC	2 cut(s)	18, 415
PscI	ACATGT	1 cut(s)	523
PsiI	TTATAA	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	2 cut(s)	54, 444
PspGI	CCWGG	1 cut(s)	448
PstI	CTGCAG	1 cut(s)	496
PvuII	CAGCTG	2 cut(s)	497, 926
RsaI	GTAC	2 cut(s)	909, 918
RsaNI	GTAC	2 cut(s)	908, 917
SaqAI	TTAA	2 cut(s)	464, 848
SatI	GCNGC	9 cut(s)	40, 225, 282, 285, 354, 492, 495, 924, 927
Sau3AI	GATC	5 cut(s)	15, 45, 109, 591, 942
SchI	GAGTC	2 cut(s)	18, 415
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	2 cut(s)	221, 970
SfaNI	GCATC	2 cut(s)	236, 829
SfcI	CTRYAG	1 cut(s)	492
Sse9I	AATT	2 cut(s)	402, 617
SsiI	CCGC	2 cut(s)	39, 42
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	3 cut(s)	734, 764, 984
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	5 cut(s)	82, 107, 142, 186, 745
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	1 cut(s)	776
TasI	AATT	2 cut(s)	402, 617
TatI	WGTACW	2 cut(s)	907, 916
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	388, 529, 856
Tru1I	TTAA	2 cut(s)	464, 848
Tru9I	TTAA	2 cut(s)	464, 848
TseFI	GTSAC	2 cut(s)	748, 806
TseI	GCWGC	8 cut(s)	224, 281, 284, 353, 491, 494, 923, 926
Tsp45I	GTSAC	2 cut(s)	748, 806
TspDTI	ATGAA	6 cut(s)	186, 492, 561, 645, 879, 928
TspGWI	ACGGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	527
XspI	CTAG	3 cut(s)	734, 764, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.