Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003612.1

Orthogroup ID

OG0013172

Physical Location & Seq

Genomic Coordinates Forward (+)

57956 .. 65672

Gene Structure 7717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003612.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atgtcggacgccgtgatcaatggcctcgccggcgccggcggagggatcatcgcccagctcatcacatatccactccagactgtgaacactcgtcagcaaacggaacgtgatctgaaaaaggagaagaggaagctcggaactgttgaacaaataggccaggttataaagaatgaaggctgggaacggttgtacggaggtttgacgccgtcgttggtgggaacagcagcatctcagggtgtttactattatttctatcaaatattcaggaacaaggctgaagttgctgcccttgaacgtagtaagttgggcattggtgatggatctgttggaatgctctcttcgctagtggtggctgcattatctgggtgtgtgaatgtactattgacaaatcctatatgggtagttgttacacgcatgcagactcatagaaaaacttcaaagtcccagcctgatcagatgctatcaactgatccagatgaagcaattgttgctgcgagaatcttggaagtttggaagagaccaccaatccagaacaaggctgaagttgctgcccttgaacgtagtaagttgggcattggtgatggatctgttggaatgctctcttcgctagtggtggctgcattatctgggtgtgtgaatgtactattgacaaatcctatatgggtagttgttacacgcatgcagactcatagaaaaacttcaaagtcccagcctgatcagatgctatcaactgatccagatgaagcaattgttgctgcggctgagcctcctcccttcgggactagtcatgcggtacaagaagtttatgatgaaggtggatttttcggtttctggagaggtgtatttcccacattgatcatggtgagtaatccttccatgcagtttatgctgtatgaaactatgttgaataagctgaagaaaagacgtgccttgagtaagaagaataacaatggtattactgctgtagagatattcctgcttggtgctttggcaaaactaggtgctactgtcgtgacatatcctcttttagtcgtgaaggcgagacttcaagcaaaacaggtcacaactggtgacaaaaggcatcattataaaggaactctggatgccattttaaagatgattcgctatgaagggttctatggtttctacaaagggatgagcacaaaaatagtacaaagtgtactcgccgctgctgttttgttcatggtcaaggaagaactcgtcaggggtgttcggttcatgctcactaacaaagcgaaatcaaagcctccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005779 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015230 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015858 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032535 GO:0034220 GO:0035349 GO:0035350 GO:0035352 GO:0042221 GO:0042493 GO:0042579 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044610 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0051724 GO:0055085 GO:0065007 GO:0065008 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0071840 GO:0072530 GO:0080121 GO:0080122 GO:0090066 GO:0098588 GO:0098655 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

424

Amino Acids

46.41

Weight (kDa)

9.76

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39970
fragaria_vesca	FvH4_7g24040 FvH4_7g24040
malus_domestica	MD01G1147600.v1.1 MD07G1214400.v1.1
prunus_persica	Prupe.2G246400_v2.0.a1
pyrus_communis	pycom07g19690
rosa_chinensis	RchiOBHm_Chr1g0369431
rosa_laevigata	RLG00000027131
rosa_multiflora	Rmu_sc0003612.1_g000019 Rmu_sc0006332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287660
rosa_rugosa	Rorug01G0350100
rosa_samantha	Rh1AG357700 Rh1BG321800 Rh1CG335500 Rh1DG352400
rosa_wichuraiana	Rw1G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	164, 1089
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	4 cut(s)	39, 758, 791, 1188
AclWI	GGATC	5 cut(s)	53, 328, 464, 592, 728
AcuI	CTGAAG	3 cut(s)	297, 561, 935
AcyI	GRCGYC	3 cut(s)	9, 33, 203
AfaI	GTAC	6 cut(s)	191, 378, 642, 795, 1173, 1182
AfiI	CCNNNNNNNGG	3 cut(s)	42, 535, 776
AgsI	TTSAA	7 cut(s)	146, 293, 438, 557, 702, 907, 1049
AhlI	ACTAGT	1 cut(s)	782
AjiI	CACGTC	1 cut(s)	926
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	3 cut(s)	58, 133, 913
AluI	AGCT	3 cut(s)	58, 133, 913
Alw21I	GWGCWC	1 cut(s)	1163
Alw26I	GTCTC	2 cut(s)	511, 1036
AlwI	GGATC	5 cut(s)	53, 328, 464, 592, 728
AoxI	GGCC	2 cut(s)	22, 154
ApeKI	GCWGC	8 cut(s)	224, 284, 353, 491, 548, 617, 755, 1190
Asp700I	GAANNNNTTC	2 cut(s)	433, 697
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	4 cut(s)	326, 590, 874, 1082
BanI	GGYRCC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	1163
BbvI	GCAGC	8 cut(s)	236, 271, 340, 478, 535, 604, 742, 1177
BccI	CCATC	2 cut(s)	311, 575
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	158
BclI	TGATCA	4 cut(s)	15, 451, 715, 855
BcoDI	GTCTC	2 cut(s)	511, 1036
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	4 cut(s)	344, 608, 783, 998
BfmI	CTRYAG	1 cut(s)	963
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	762
Bme1390I	CCNGG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	926
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	5 cut(s)	236, 447, 711, 1090, 1093
BpmI	CTGGAG	2 cut(s)	59, 853
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	952
BsaHI	GRCGYC	3 cut(s)	9, 33, 203
BsaI	GGTCTC	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 535, 776
Bse118I	RCCGGY	2 cut(s)	29, 35
Bse1I	ACTGG	1 cut(s)	1072
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	1108, 1161
BseLI	CCNNNNNNNGG	3 cut(s)	42, 535, 776
BseMII	CTCAG	2 cut(s)	245, 753
BseNI	ACTGG	1 cut(s)	1072
BseRI	GAGGAG	1 cut(s)	759
BseXI	GCAGC	8 cut(s)	236, 271, 340, 478, 535, 604, 742, 1177
BseYI	CCCAGC	4 cut(s)	54, 177, 444, 708
BshFI	GGCC	2 cut(s)	24, 156
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	1163
BsiSI	CCGG	2 cut(s)	30, 36
BslFI	GGGAC	3 cut(s)	427, 691, 793
BslI	CCNNNNNNNGG	3 cut(s)	42, 535, 776
BsmAI	GTCTC	2 cut(s)	511, 1036
BsmFI	GGGAC	3 cut(s)	427, 691, 793
BsmI	GAATGC	2 cut(s)	336, 600
BsnI	GGCC	2 cut(s)	24, 156
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	1163
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	4 cut(s)	39, 758, 791, 1188
BspANI	GGCC	2 cut(s)	24, 156
BspCNI	CTCAG	2 cut(s)	244, 754
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	5 cut(s)	53, 328, 464, 592, 728
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	511
BsrFI	RCCGGY	2 cut(s)	29, 35
BsrI	ACTGG	1 cut(s)	1072
BssAI	RCCGGY	2 cut(s)	29, 35
BssNI	GRCGYC	3 cut(s)	9, 33, 203
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	4 cut(s)	82, 142, 186, 1009
Bst6I	CTCTTC	4 cut(s)	119, 343, 509, 607
BstACI	GRCGYC	3 cut(s)	9, 33, 203
BstAPI	GCANNNNNTGC	3 cut(s)	488, 752, 886
BstC8I	GCNNGC	4 cut(s)	31, 37, 416, 680
BstDEI	CTNAG	2 cut(s)	231, 762
BstF5I	GGATG	2 cut(s)	1108, 1161
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	2 cut(s)	511, 1036
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 281, 340, 488, 545, 604, 752, 886
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	2 cut(s)	418, 682
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	963
BstV1I	GCAGC	8 cut(s)	236, 271, 340, 478, 535, 604, 742, 1177
BstX2I	RGATCY	2 cut(s)	320, 584
BstYI	RGATCY	2 cut(s)	320, 584
BsuRI	GGCC	2 cut(s)	24, 156
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	926
BtsCI	GGATG	2 cut(s)	1108, 1161
Cac8I	GCNNGC	4 cut(s)	31, 37, 416, 680
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	2 cut(s)	29, 35
CseI	GACGC	2 cut(s)	17, 211
Csp6I	GTAC	6 cut(s)	190, 377, 641, 794, 1172, 1181
CviAII	CATG	7 cut(s)	415, 679, 788, 859, 877, 1204, 1240
CviQI	GTAC	6 cut(s)	190, 377, 641, 794, 1172, 1181
DdeI	CTNAG	2 cut(s)	231, 762
DinI	GGCGCC	1 cut(s)	34
DraI	TTTAAA	1 cut(s)	1113
Eam1104I	CTCTTC	4 cut(s)	119, 343, 509, 607
EarI	CTCTTC	4 cut(s)	119, 343, 509, 607
EciI	GGCGGA	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	511
Eco57I	CTGAAG	3 cut(s)	297, 561, 935
EcoRII	CCWGG	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	7 cut(s)	418, 682, 791, 862, 880, 1207, 1243
FaqI	GGGAC	3 cut(s)	427, 691, 793
FatI	CATG	7 cut(s)	414, 678, 787, 858, 876, 1203, 1239
FbaI	TGATCA	4 cut(s)	15, 451, 715, 855
FokI	GGATG	2 cut(s)	1115, 1168
FspBI	CTAG	4 cut(s)	344, 608, 783, 998
GlaI	GCGC	1 cut(s)	34
GsaI	CCCAGC	4 cut(s)	58, 181, 448, 712
GsuI	CTGGAG	2 cut(s)	59, 853
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	24, 156
HapII	CCGG	2 cut(s)	30, 36
HgaI	GACGC	2 cut(s)	17, 211
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	3 cut(s)	9, 33, 203
Hin1II	CATG	7 cut(s)	418, 682, 791, 862, 880, 1207, 1243
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	4 cut(s)	421, 498, 685, 1120
HpaII	CCGG	2 cut(s)	30, 36
HphI	GGTGA	4 cut(s)	326, 590, 874, 1082
Hpy166II	GTNNAC	3 cut(s)	85, 241, 1181
Hpy188I	TCNGA	5 cut(s)	7, 114, 137, 456, 720
Hpy8I	GTNNAC	3 cut(s)	85, 241, 1181
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	6 cut(s)	167, 784, 806, 882, 1030, 1124
HpyCH4III	ACNGT	4 cut(s)	82, 142, 186, 1009
HpyCH4IV	ACGT	4 cut(s)	106, 295, 559, 925
HpyCH4V	TGCA	5 cut(s)	356, 418, 620, 682, 880
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 281, 340, 488, 545, 604, 752, 886
HpyF3I	CTNAG	2 cut(s)	231, 762
HpySE526I	ACGT	4 cut(s)	106, 295, 559, 925
Hsp92I	GRCGYC	3 cut(s)	9, 33, 203
Hsp92II	CATG	7 cut(s)	418, 682, 791, 862, 880, 1207, 1243
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
KroI	GCCGGC	2 cut(s)	29, 35
KroNI	GCCGGC	2 cut(s)	31, 37
Ksp22I	TGATCA	4 cut(s)	15, 451, 715, 855
Lsp1109I	GCAGC	8 cut(s)	236, 271, 340, 478, 535, 604, 742, 1177
LweI	GCATC	5 cut(s)	236, 447, 711, 1090, 1093
MaeI	CTAG	4 cut(s)	344, 608, 783, 998
MaeII	ACGT	4 cut(s)	106, 295, 559, 925
MaeIII	GTNAC	5 cut(s)	406, 670, 1012, 1060, 1070
MboII	GAAGA	7 cut(s)	136, 330, 526, 594, 928, 952, 1226
MfeI	CAATTG	2 cut(s)	483, 747
MflI	RGATCY	2 cut(s)	320, 584
MhlI	GDGCHC	1 cut(s)	1163
MluCI	AATT	2 cut(s)	483, 747
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	2 cut(s)	415, 679
MmeI	TCCRAC	2 cut(s)	307, 571
MnlI	CCTC	8 cut(s)	35, 35, 120, 188, 777, 780, 830, 1032
MreI	CGCCGGCG	2 cut(s)	29, 35
MroNI	GCCGGC	2 cut(s)	29, 35
MroXI	GAANNNNTTC	2 cut(s)	433, 697
MseI	TTAA	1 cut(s)	1112
MspA1I	CMGCKG	1 cut(s)	1190
MspI	CCGG	2 cut(s)	30, 36
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	2 cut(s)	483, 747
Mva1269I	GAATGC	2 cut(s)	336, 600
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	8 cut(s)	30, 281, 340, 488, 545, 604, 752, 886
NaeI	GCCGGC	2 cut(s)	31, 37
NarI	GGCGCC	1 cut(s)	33
NgoMIV	GCCGGC	2 cut(s)	29, 35
NlaIII	CATG	7 cut(s)	418, 682, 791, 862, 880, 1207, 1243
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	3 cut(s)	1012, 1060, 1070
NspI	RCATGY	2 cut(s)	418, 682
PaeI	GCATGC	2 cut(s)	418, 682
PctI	GAATGC	2 cut(s)	336, 600
PdiI	GCCGGC	2 cut(s)	31, 37
PdmI	GAANNNNTTC	2 cut(s)	433, 697
PfeI	GAWTC	2 cut(s)	498, 1120
PflFI	GACNNNGTC	1 cut(s)	205
PleI	GAGTC	2 cut(s)	415, 679
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	2 cut(s)	415, 679
PsiI	TTATAA	2 cut(s)	164, 1089
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	4 cut(s)	54, 177, 444, 708
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	320, 584
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	6 cut(s)	191, 378, 642, 795, 1173, 1182
RsaNI	GTAC	6 cut(s)	190, 377, 641, 794, 1172, 1181
SaqAI	TTAA	1 cut(s)	1112
SchI	GAGTC	2 cut(s)	415, 679
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	1163
SfaNI	GCATC	5 cut(s)	236, 447, 711, 1090, 1093
SfcI	CTRYAG	1 cut(s)	963
SfoI	GGCGCC	1 cut(s)	34
SgrAI	CRCCGGYG	2 cut(s)	29, 35
SmlI	CTYRAG	1 cut(s)	931
SmoI	CTYRAG	1 cut(s)	931
SpeI	ACTAGT	1 cut(s)	782
SphI	GCATGC	2 cut(s)	418, 682
Sse9I	AATT	2 cut(s)	483, 747
SsiI	CCGC	4 cut(s)	39, 758, 791, 1188
SspDI	GGCGCC	1 cut(s)	32
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	4 cut(s)	344, 608, 783, 998
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	82, 142, 186, 1009
TaiI	ACGT	4 cut(s)	109, 298, 562, 928
TasI	AATT	2 cut(s)	483, 747
TatI	WGTACW	4 cut(s)	376, 640, 1171, 1180
TauI	GCSGC	2 cut(s)	761, 1190
TfiI	GAWTC	2 cut(s)	498, 1120
Tru1I	TTAA	1 cut(s)	1112
Tru9I	TTAA	1 cut(s)	1112
TseFI	GTSAC	3 cut(s)	1012, 1060, 1070
TseI	GCWGC	8 cut(s)	224, 284, 353, 491, 548, 617, 755, 1190
Tsp45I	GTSAC	3 cut(s)	1012, 1060, 1070
TspDTI	ATGAA	8 cut(s)	186, 492, 756, 825, 909, 1143, 1192, 1228
TspGWI	ACGGA	2 cut(s)	116, 207
Tth111I	GACNNNGTC	1 cut(s)	205
XceI	RCATGY	2 cut(s)	418, 682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	856
XmnI	GAANNNNTTC	2 cut(s)	433, 697
XspI	CTAG	4 cut(s)	344, 608, 783, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.