Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013172

Physical Location & Seq

Genomic Coordinates Reverse (-)

21980617 .. 21984581

Gene Structure 3965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19690.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCCGACGCTTTGATCGATGGACTCGCCGGAGCTGGCGGCGGGATCATCGCCCAGCTCATCACCTATCCTCTTCAGACTGTGAATACTCGTCAACAAACGGACCGTGATCTGAAGGAGAAGAAGAAGAAACTCGGAACTGTGGAGCAAATATGTCAGGTTATAAAAAATGAAGGATGGGAACGGTTGTATGGAGGTTTGACGCCATCGTTGGTGGGCACGGCAGCATCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACAAGGCTGAAGCTGCTGCTCTTGAACGGAGGAAGATGGGGGTTGGTGATGGGTCTGTCGGAATGCTCTCTTCACTTTTGGTTGCTGCATTGTCTGGGTGCGTGAATGTGCTGTTCACAAATCCTATATGGGTAATTGTTACGCGTATGCAGACTCATAAAAAATCCTCCAAGTCCCAGCCTGGTCAGGAGCTATTAACTGCTCCAGATGAAGAAATCCTTGCTGCAGCTGAGCCTCCTCCATTCGGCACGGCACATGCGATTCAGGAAGTTTATGATGAAGGTGGAGTTTTCGGCTTCTGGAGAGGTGTTTTCCCGACATTGATCATGGTGAGTAATCCTTCCATGCAATTTATGCTGTATGAAACTATGCTGAAGAAGCTGAAGCAAAGACGTGCCTTGAATAAGAAGGGTAACAATGGGATTACTGCTTTAGAGATATTTCTTCTTGGTGCTTTGGCGAAACTAGGAGCTACGGTTGTGACATATCCTCTTCTAGTTGTGAAGTCGAGGCTTCAAGCAAAACAGGTTACAAATGGTGACAAAAGGCAACACTATAAAGGCACATCAGATGCTATTTTAAAGATGATTCGCTATGAAGGATTATACGGGTTTTACAAAGGGATGGGAACGAAAATAGTCCAAAGTGTACTTGCAGCTGCCGTTCTGTTCATGATTAAGGAGGAACTTGTCAAGGGTGCTCGGTTCTTGCTCACTAGCAAAGTAAAGTCAAAGCCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005779 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015230 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015858 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032535 GO:0034220 GO:0035349 GO:0035350 GO:0035352 GO:0042221 GO:0042493 GO:0042579 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044610 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0051724 GO:0055085 GO:0065007 GO:0065008 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0071840 GO:0072530 GO:0080121 GO:0080122 GO:0090066 GO:0098588 GO:0098655 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

337

Amino Acids

36.83

Weight (kDa)

9.71

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39970
fragaria_vesca	FvH4_7g24040 FvH4_7g24040
malus_domestica	MD01G1147600.v1.1 MD07G1214400.v1.1
prunus_persica	Prupe.2G246400_v2.0.a1
pyrus_communis	pycom07g19690
rosa_chinensis	RchiOBHm_Chr1g0369431
rosa_laevigata	RLG00000027131
rosa_multiflora	Rmu_sc0003612.1_g000019 Rmu_sc0006332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287660
rosa_rugosa	Rorug01G0350100
rosa_samantha	Rh1AG357700 Rh1BG321800 Rh1CG335500 Rh1DG352400
rosa_wichuraiana	Rw1G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AccII	CGCG	1 cut(s)	412
AciI	CCGC	2 cut(s)	39, 42
AclWI	GGATC	1 cut(s)	53
AcuI	CTGAAG	5 cut(s)	59, 134, 297, 662, 671
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	918
AfiI	CCNNNNNNNGG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	293, 670, 785
AjiI	CACGTC	1 cut(s)	662
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	8 cut(s)	35, 58, 281, 460, 497, 649, 740, 926
AluI	AGCT	8 cut(s)	35, 58, 281, 460, 497, 649, 740, 926
Alw21I	GWGCWC	1 cut(s)	970
AlwI	GGATC	1 cut(s)	53
ApeKI	GCWGC	8 cut(s)	224, 281, 284, 353, 491, 494, 923, 926
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	4 cut(s)	55, 326, 610, 818
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	970
BbvI	GCAGC	8 cut(s)	236, 268, 271, 340, 478, 506, 913, 935
BccI	CCATC	6 cut(s)	14, 171, 214, 298, 311, 886
BceAI	ACGGC	3 cut(s)	237, 534, 914
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	1 cut(s)	591
BfaI	CTAG	3 cut(s)	734, 764, 984
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	9 cut(s)	40, 225, 282, 285, 354, 492, 495, 924, 927
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	9 cut(s)	41, 226, 283, 286, 355, 493, 496, 925, 928
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	2 cut(s)	236, 829
BpmI	CTGGAG	2 cut(s)	456, 589
Bpu1102I	GCTNAGC	1 cut(s)	498
Bsa29I	ATCGAT	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	18
BseGI	GGATG	2 cut(s)	182, 897
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMII	CTCAG	2 cut(s)	245, 489
BseRI	GAGGAG	1 cut(s)	495
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	8 cut(s)	236, 268, 271, 340, 478, 506, 913, 935
BseYI	CCCAGC	2 cut(s)	54, 444
Bsh1236I	CGCG	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	970
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	221, 970
Bsp143I	GATC	4 cut(s)	15, 45, 109, 591
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	2 cut(s)	39, 42
BspCNI	CTCAG	2 cut(s)	244, 490
BspDI	ATCGAT	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	939
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	53
BssMI	GATC	4 cut(s)	15, 45, 109, 591
BssNI	GRCGYC	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	5 cut(s)	82, 107, 142, 186, 745
Bst6I	CTCTTC	3 cut(s)	78, 343, 765
BstACI	GRCGYC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	231, 498
BstF5I	GGATG	2 cut(s)	182, 897
BstFNI	CGCG	1 cut(s)	412
BstKTI	GATC	4 cut(s)	18, 48, 112, 594
BstMBI	GATC	4 cut(s)	15, 45, 109, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 622, 646
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	8 cut(s)	236, 268, 271, 340, 478, 506, 913, 935
Bsu15I	ATCGAT	1 cut(s)	18
BsuTUI	ATCGAT	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	182, 897
Cac8I	GCNNGC	1 cut(s)	37
CciI	TCATGA	1 cut(s)	939
Cfr13I	GGNCC	1 cut(s)	103
ClaI	ATCGAT	1 cut(s)	18
CpoI	CGGWCCG	1 cut(s)	103
CseI	GACGC	2 cut(s)	17, 211
Csp6I	GTAC	1 cut(s)	917
CspI	CGGWCCG	1 cut(s)	103
CviAII	CATG	4 cut(s)	524, 595, 613, 940
CviQI	GTAC	1 cut(s)	917
DdeI	CTNAG	2 cut(s)	231, 498
DpnI	GATC	4 cut(s)	17, 47, 111, 593
DpnII	GATC	4 cut(s)	15, 45, 109, 591
DraI	TTTAAA	1 cut(s)	849
Eam1104I	CTCTTC	3 cut(s)	78, 343, 765
EarI	CTCTTC	3 cut(s)	78, 343, 765
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	5 cut(s)	59, 134, 297, 662, 671
EcoRII	CCWGG	1 cut(s)	448
FaeI	CATG	4 cut(s)	527, 598, 616, 943
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	4 cut(s)	523, 594, 612, 939
FauI	CCCGC	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	9 cut(s)	40, 225, 282, 285, 354, 492, 495, 924, 927
FokI	GGATG	2 cut(s)	189, 904
Fsp4HI	GCNGC	9 cut(s)	40, 225, 282, 285, 354, 492, 495, 924, 927
FspBI	CTAG	3 cut(s)	734, 764, 984
GluI	GCNGC	9 cut(s)	40, 225, 282, 285, 354, 492, 495, 924, 927
GsaI	CCCAGC	2 cut(s)	58, 448
GsuI	CTGGAG	2 cut(s)	456, 589
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	2 cut(s)	17, 211
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	527, 598, 616, 943
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HinfI	GANTC	4 cut(s)	24, 421, 529, 856
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	4 cut(s)	55, 326, 610, 818
Hpy166II	GTNNAC	4 cut(s)	95, 241, 384, 917
Hpy188I	TCNGA	6 cut(s)	7, 78, 114, 137, 329, 838
Hpy188III	TCNNGA	8 cut(s)	265, 290, 455, 473, 533, 568, 583, 940
Hpy8I	GTNNAC	4 cut(s)	95, 241, 384, 917
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	6 cut(s)	109, 167, 542, 618, 670, 860
HpyCH4III	ACNGT	5 cut(s)	82, 107, 142, 186, 745
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	5 cut(s)	356, 418, 494, 616, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 622, 646
HpyF3I	CTNAG	2 cut(s)	231, 498
HpySE526I	ACGT	1 cut(s)	661
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	527, 598, 616, 943
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	4 cut(s)	15, 45, 109, 591
LmnI	GCTCC	5 cut(s)	32, 145, 457, 475, 737
Lsp1109I	GCAGC	8 cut(s)	236, 268, 271, 340, 478, 506, 913, 935
LweI	GCATC	2 cut(s)	236, 829
MaeI	CTAG	3 cut(s)	734, 764, 984
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	5 cut(s)	406, 680, 748, 796, 806
MalI	GATC	4 cut(s)	17, 47, 111, 593
MboI	GATC	4 cut(s)	15, 45, 109, 591
MhlI	GDGCHC	2 cut(s)	221, 970
MluCI	AATT	2 cut(s)	402, 617
MluI	ACGCGT	1 cut(s)	410
MlyI	GAGTC	2 cut(s)	18, 415
MmeI	TCCRAC	2 cut(s)	30, 307
MseI	TTAA	3 cut(s)	464, 848, 945
MspA1I	CMGCKG	2 cut(s)	497, 926
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	3 cut(s)	281, 622, 646
NdeII	GATC	4 cut(s)	15, 45, 109, 591
NlaIII	CATG	4 cut(s)	527, 598, 616, 943
NmuCI	GTSAC	2 cut(s)	748, 806
NspI	RCATGY	1 cut(s)	527
PagI	TCATGA	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 524
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	529, 856
PkrI	GCNGC	9 cut(s)	41, 226, 283, 286, 355, 493, 496, 925, 928
PleI	GAGTC	2 cut(s)	18, 415
PpsI	GAGTC	2 cut(s)	18, 415
PsiI	TTATAA	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	2 cut(s)	54, 444
PspGI	CCWGG	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	496
PvuII	CAGCTG	2 cut(s)	497, 926
RsaI	GTAC	1 cut(s)	918
RsaNI	GTAC	1 cut(s)	917
Rsr2I	CGGWCCG	1 cut(s)	103
RsrII	CGGWCCG	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	464, 848, 945
SatI	GCNGC	9 cut(s)	40, 225, 282, 285, 354, 492, 495, 924, 927
Sau3AI	GATC	4 cut(s)	15, 45, 109, 591
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	18, 415
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	2 cut(s)	221, 970
SfaNI	GCATC	2 cut(s)	236, 829
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	402, 617
SsiI	CCGC	2 cut(s)	39, 42
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	3 cut(s)	734, 764, 984
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	5 cut(s)	82, 107, 142, 186, 745
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	2 cut(s)	18, 776
TasI	AATT	2 cut(s)	402, 617
TatI	WGTACW	1 cut(s)	916
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	529, 856
Tru1I	TTAA	3 cut(s)	464, 848, 945
Tru9I	TTAA	3 cut(s)	464, 848, 945
TseFI	GTSAC	2 cut(s)	748, 806
TseI	GCWGC	8 cut(s)	224, 281, 284, 353, 491, 494, 923, 926
Tsp45I	GTSAC	2 cut(s)	748, 806
TspDTI	ATGAA	6 cut(s)	186, 492, 561, 645, 879, 928
TspGWI	ACGGA	2 cut(s)	116, 310
VpaK11BI	GGWCC	1 cut(s)	103
XceI	RCATGY	1 cut(s)	527
XspI	CTAG	3 cut(s)	734, 764, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.