Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013172

Physical Location & Seq

Genomic Coordinates Reverse (-)

25644004 .. 25652711

Gene Structure 8708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1147600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCCGACGCTTTGATCAATGGCCTCGCCGGAGATGGCGGCGGGATCATCGCCCAGCTCATCACATATCCTCTCCAGACTGTGAATACTCGCCAACAAACAGACCGTGGTCTGAAGAAGGAGAAGAACAAGCTCGGAACTGTTGAGCAAATATGTCAGGTTATTAAAAATGAAGGATGGGAGCGGTTGTACGGCGGTTTGACGCCATCATTGGTGGGGACGGCAGCATCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACAAGGCTGAAACTGCTGCACTTGAACGGAGGAAGATGGGGGTTGGTGATGGATCTGTTGGAATGCTCTCTTCACTTTTGGTTGCTGCATTATCTGGGTGCGTGAATGTGCTGTTCACAAATCCTATATGGGTAGTTGTTACGCGTATGCAGACTTATAAAAAATCCTCAAAGAAGTGCCAGCCCGGTCAGGAGCTGTCAACTGCTCCAGATGAAGCAATCCTTGCTGCAGCTGAGCTTCCTCCCTTTGGGACTACTCATGCGATTCAGGAAATTTATGATGAGGGTGGAGTTTTCGGCTTCTGGAGAGGTGTATTCCCGACATTGATCATGGTGAGTAATCCTTCCATGCAATTTATGCTGTATGAAACTATGCTGAAGAAGCTGAAACAAAGGCGTGCCTTGAATAAGAAGGGTAACAGCGGGGTTACTGCTTTAGAGATATTTTCTCTTGGTGCCTTGGCAAAACTAGGGGCTACGGTTGTGACATATCCTCTTCTAGTCGTAAAGTCAAGGCTTCAAGCAAAACAGGTTACAAACGGAGACAAAAGGCAACACTATAAAGGCACATCCGATGCTATTTTAAAGATGATTCGGTATGAAGGACTTTACGGGTTCTACAAAGGGATGGGAACGAAAATAGTACAAAGTGTACTCGCAGCTGCTGTTCTGTTCATGATTAAGGAGGAACTTGTCAATGCCGCTCGATTCTTGCTCACCAGCAAAGTAAAATCAAAACCTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005779 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015230 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015858 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032535 GO:0034220 GO:0035349 GO:0035350 GO:0035352 GO:0042221 GO:0042493 GO:0042579 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044610 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0051724 GO:0055085 GO:0065007 GO:0065008 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0071840 GO:0072530 GO:0080121 GO:0080122 GO:0090066 GO:0098588 GO:0098655 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

338

Amino Acids

36.9

Weight (kDa)

9.72

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 90	2.6e-16	Mitochondrial carrier protein
Mito_carr	PF00153	110 - 220	2e-18	Mitochondrial carrier protein
Mito_carr	PF00153	233 - 321	3.9e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39970
fragaria_vesca	FvH4_7g24040 FvH4_7g24040
malus_domestica	MD01G1147600.v1.1 MD07G1214400.v1.1
prunus_persica	Prupe.2G246400_v2.0.a1
pyrus_communis	pycom07g19690
rosa_chinensis	RchiOBHm_Chr1g0369431
rosa_laevigata	RLG00000027131
rosa_multiflora	Rmu_sc0003612.1_g000019 Rmu_sc0006332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287660
rosa_rugosa	Rorug01G0350100
rosa_samantha	Rh1AG357700 Rh1BG321800 Rh1CG335500 Rh1DG352400
rosa_wichuraiana	Rw1G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	722
AccBSI	CCGCTC	2 cut(s)	184, 971
AccII	CGCG	1 cut(s)	412
AciI	CCGC	6 cut(s)	39, 42, 184, 195, 690, 969
AclWI	GGATC	2 cut(s)	53, 328
AcsI	RAATTY	1 cut(s)	540
AcuI	CTGAAG	2 cut(s)	134, 665
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	3 cut(s)	191, 912, 921
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	293, 673, 788
AluBI	AGCT	7 cut(s)	58, 133, 463, 500, 505, 652, 929
AluI	AGCT	7 cut(s)	58, 133, 463, 500, 505, 652, 929
Alw26I	GTCTC	1 cut(s)	804
AlwI	GGATC	2 cut(s)	53, 328
AlwNI	CAGNNNCTG	2 cut(s)	463, 932
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	7 cut(s)	224, 284, 353, 494, 497, 926, 929
ApoI	RAATTY	1 cut(s)	540
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	3 cut(s)	326, 613, 976
BanI	GGYRCC	1 cut(s)	722
BbvI	GCAGC	7 cut(s)	236, 271, 340, 481, 509, 916, 938
BccI	CCATC	6 cut(s)	29, 171, 214, 298, 311, 889
BceAI	ACGGC	2 cut(s)	208, 237
BclI	TGATCA	2 cut(s)	15, 594
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	804
BfaI	CTAG	2 cut(s)	737, 767
BfmI	CTRYAG	1 cut(s)	495
BisI	GCNGC	9 cut(s)	40, 225, 285, 354, 495, 498, 927, 930, 969
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	9 cut(s)	41, 226, 286, 355, 496, 499, 928, 931, 970
Bme1390I	CCNGG	1 cut(s)	453
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	2 cut(s)	236, 832
BoxI	GACNNNNGTC	1 cut(s)	108
BpmI	CTGGAG	3 cut(s)	59, 459, 592
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	106, 726
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	106, 726
BseGI	GGATG	3 cut(s)	182, 836, 900
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	245, 492
BseXI	GCAGC	7 cut(s)	236, 271, 340, 481, 509, 916, 938
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	722
BsiSI	CCGG	2 cut(s)	30, 453
BslFI	GGGAC	2 cut(s)	232, 532
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	804
BsmFI	GGGAC	2 cut(s)	232, 532
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	24
Bsp143I	GATC	4 cut(s)	15, 45, 320, 594
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	6 cut(s)	39, 42, 184, 195, 690, 969
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	244, 493
BspFNI	CGCG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	1 cut(s)	724
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	2 cut(s)	53, 328
BspT107I	GGYRCC	1 cut(s)	722
BsrBI	CCGCTC	2 cut(s)	184, 971
BssECI	CCNNGG	2 cut(s)	106, 726
BssMI	GATC	4 cut(s)	15, 45, 320, 594
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	726
Bst4CI	ACNGT	4 cut(s)	82, 107, 142, 748
Bst6I	CTCTTC	2 cut(s)	343, 768
BstACI	GRCGYC	1 cut(s)	203
BstAPI	GCANNNNNTGC	2 cut(s)	491, 625
BstC8I	GCNNGC	2 cut(s)	449, 666
BstDEI	CTNAG	2 cut(s)	231, 501
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	3 cut(s)	182, 836, 900
BstFNI	CGCG	1 cut(s)	412
BstKTI	GATC	4 cut(s)	18, 48, 323, 597
BstMAI	GTCTC	1 cut(s)	804
BstMBI	GATC	4 cut(s)	15, 45, 320, 594
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 491, 625, 649
BstPAI	GACNNNNGTC	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	7 cut(s)	236, 271, 340, 481, 509, 916, 938
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	106
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	182, 836, 900
Cac8I	GCNNGC	2 cut(s)	449, 666
CaiI	CAGNNNCTG	2 cut(s)	463, 932
CciI	TCATGA	1 cut(s)	942
CseI	GACGC	2 cut(s)	17, 211
Csp6I	GTAC	3 cut(s)	190, 911, 920
CviAII	CATG	4 cut(s)	527, 598, 616, 943
CviQI	GTAC	3 cut(s)	190, 911, 920
DdeI	CTNAG	2 cut(s)	231, 501
DpnI	GATC	4 cut(s)	17, 47, 322, 596
DpnII	GATC	4 cut(s)	15, 45, 320, 594
DraI	TTTAAA	1 cut(s)	852
Eam1104I	CTCTTC	2 cut(s)	343, 768
EarI	CTCTTC	2 cut(s)	343, 768
Eco130I	CCWWGG	1 cut(s)	726
Eco57I	CTGAAG	2 cut(s)	134, 665
EcoT14I	CCWWGG	1 cut(s)	726
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	4 cut(s)	530, 601, 619, 946
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	2 cut(s)	232, 532
FatI	CATG	4 cut(s)	526, 597, 615, 942
FauI	CCCGC	2 cut(s)	35, 683
FbaI	TGATCA	2 cut(s)	15, 594
Fnu4HI	GCNGC	9 cut(s)	40, 225, 285, 354, 495, 498, 927, 930, 969
FokI	GGATG	3 cut(s)	189, 823, 907
Fsp4HI	GCNGC	9 cut(s)	40, 225, 285, 354, 495, 498, 927, 930, 969
FspBI	CTAG	2 cut(s)	737, 767
GluI	GCNGC	9 cut(s)	40, 225, 285, 354, 495, 498, 927, 930, 969
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	3 cut(s)	59, 459, 592
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	2 cut(s)	30, 453
HgaI	GACGC	2 cut(s)	17, 211
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	530, 601, 619, 946
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HinfI	GANTC	3 cut(s)	532, 859, 975
HpaII	CCGG	2 cut(s)	30, 453
HphI	GGTGA	3 cut(s)	326, 613, 976
Hpy166II	GTNNAC	4 cut(s)	241, 384, 468, 920
Hpy188I	TCNGA	4 cut(s)	7, 114, 137, 841
Hpy188III	TCNNGA	8 cut(s)	76, 265, 458, 476, 536, 571, 586, 943
Hpy8I	GTNNAC	4 cut(s)	241, 384, 468, 920
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	5 cut(s)	112, 167, 621, 673, 863
HpyCH4III	ACNGT	4 cut(s)	82, 107, 142, 748
HpyCH4V	TGCA	5 cut(s)	287, 356, 418, 497, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 491, 625, 649
HpyF3I	CTNAG	2 cut(s)	231, 501
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	530, 601, 619, 946
Ksp22I	TGATCA	2 cut(s)	15, 594
Kzo9I	GATC	4 cut(s)	15, 45, 320, 594
LmnI	GCTCC	3 cut(s)	181, 460, 478
Lsp1109I	GCAGC	7 cut(s)	236, 271, 340, 481, 509, 916, 938
LweI	GCATC	2 cut(s)	236, 832
MaeI	CTAG	2 cut(s)	737, 767
MaeIII	GTNAC	5 cut(s)	406, 683, 694, 751, 799
MalI	GATC	4 cut(s)	17, 47, 322, 596
MbiI	CCGCTC	2 cut(s)	184, 971
MboI	GATC	4 cut(s)	15, 45, 320, 594
MboII	GAAGA	6 cut(s)	127, 136, 313, 330, 658, 755
MflI	RGATCY	1 cut(s)	320
MluCI	AATT	2 cut(s)	540, 620
MluI	ACGCGT	1 cut(s)	410
MmeI	TCCRAC	2 cut(s)	30, 307
MnlI	CCTC	9 cut(s)	35, 81, 291, 445, 519, 544, 569, 771, 946
MseI	TTAA	3 cut(s)	165, 851, 948
MspA1I	CMGCKG	3 cut(s)	500, 690, 929
MspI	CCGG	2 cut(s)	30, 453
MspR9I	CCNGG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	336
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	4 cut(s)	281, 491, 625, 649
NciI	CCSGG	1 cut(s)	453
NdeII	GATC	4 cut(s)	15, 45, 320, 594
NlaIII	CATG	4 cut(s)	530, 601, 619, 946
NlaIV	GGNNCC	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	751
PagI	TCATGA	1 cut(s)	942
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	532, 859, 975
PkrI	GCNGC	9 cut(s)	41, 226, 286, 355, 496, 499, 928, 931, 970
PshAI	GACNNNNGTC	1 cut(s)	108
PsiI	TTATAA	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	724
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	2 cut(s)	463, 932
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	2 cut(s)	500, 929
RsaI	GTAC	3 cut(s)	191, 912, 921
RsaNI	GTAC	3 cut(s)	190, 911, 920
SaqAI	TTAA	3 cut(s)	165, 851, 948
SatI	GCNGC	9 cut(s)	40, 225, 285, 354, 495, 498, 927, 930, 969
Sau3AI	GATC	4 cut(s)	15, 45, 320, 594
ScrFI	CCNGG	1 cut(s)	453
SfaNI	GCATC	2 cut(s)	236, 832
SfcI	CTRYAG	1 cut(s)	495
Sse9I	AATT	2 cut(s)	540, 620
SsiI	CCGC	6 cut(s)	39, 42, 184, 195, 690, 969
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	2 cut(s)	737, 767
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	4 cut(s)	82, 107, 142, 748
TaqI	TCGA	1 cut(s)	973
TasI	AATT	2 cut(s)	540, 620
TatI	WGTACW	2 cut(s)	910, 919
TauI	GCSGC	2 cut(s)	42, 971
TfiI	GAWTC	3 cut(s)	532, 859, 975
Tru1I	TTAA	3 cut(s)	165, 851, 948
Tru9I	TTAA	3 cut(s)	165, 851, 948
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	7 cut(s)	224, 284, 353, 494, 497, 926, 929
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	5 cut(s)	186, 495, 648, 882, 931
TspGWI	ACGGA	3 cut(s)	310, 822, 999
XapI	RAATTY	1 cut(s)	540
XspI	CTAG	2 cut(s)	737, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.