Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013172

Physical Location & Seq

Genomic Coordinates Reverse (-)

26314578 .. 26319467

Gene Structure 4890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G246400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCGGACGCTTTGATCAATGGCCTGGCCGGAGCTGGCGGCGGAATCATCGCCCAGCTCATCACATATCCTCTTCAGACTGTTAATACTCGTCAACAAACAGAACGTGGATTGAAGAAGGAAAAGAGCAAGCTCGGAACTATTGAACAAATGCTTCAGGTTATAAAACATGAAGGATGGGAACGGTTGTACGGAGGTTTGGCGCCATCATTAGTGGGCACAGCAGCATCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACAAGGCTGAAGCTGCTGCACTTGAACGTAGGAAGTTAGGGGTTGGTGATGGATCTGTTGGAATGCTATCTTCATTAGTGGTTGCTGCGTTATCTGGGTGTGTGAATGTGCTGTTCACAAATCCTATATGGGTAGTTGTTACACGCATGCAGACATACAAAAAAAACTTGAAGAAGTCCGAGCCTGGTCCGGAGCTATCAACTGCTCAAGATGAAGCAGTCCTTGCTGCAGCTGAGCCTCCTCCCTTTGGGACAACTCATGCGATCCAGGAAGTTTATGATGAAGCTGGAGTTTTGGGTTTCTGGAGAGGTGTATTCCCGACATTGATCATGGTGAGTAATCCTTCCATGCAATTTATGCTGTATGAAACTATGTTGAAGAAGCTAAAGCAAAGACGTGCTTTGAGTAAGAAGGATAACAGTGGGGTTACTGCTTTGGAGATATTTCTTCTTGGTGCTTTGGCGAAACTAGGGGCTACAGTCATGACTTATCCTCTTTTAGTTGTGAAGTCGCGGCTTCAAGCAAAACAGGTTACAACTGGTGACAAAAGGCATCATTATAAAGGCACATCAGACGCTATGCTAAAGATGATTCGCTATGAAGGATTATATGGGTTTTACAAAGGGATGGGAACAAAAATAGTACAAAGTGTACTTGCAGCTGCTGTTCTGTTCATGATTAAGGAAGAGCTTGTTAAGGGTGCTCGGTTCTTGCTCACTAACAAAGTGAAATCAAAGCCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005779 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015230 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015858 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032535 GO:0034220 GO:0035349 GO:0035350 GO:0035352 GO:0042221 GO:0042493 GO:0042579 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044610 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0051724 GO:0055085 GO:0065007 GO:0065008 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0071840 GO:0072530 GO:0080121 GO:0080122 GO:0090066 GO:0098588 GO:0098655 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

338

Amino Acids

36.92

Weight (kDa)

9.78

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39970
fragaria_vesca	FvH4_7g24040 FvH4_7g24040
malus_domestica	MD01G1147600.v1.1 MD07G1214400.v1.1
prunus_persica	Prupe.2G246400_v2.0.a1
pyrus_communis	pycom07g19690
rosa_chinensis	RchiOBHm_Chr1g0369431
rosa_laevigata	RLG00000027131
rosa_multiflora	Rmu_sc0003612.1_g000019 Rmu_sc0006332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287660
rosa_rugosa	Rorug01G0350100
rosa_samantha	Rh1AG357700 Rh1BG321800 Rh1CG335500 Rh1DG352400
rosa_wichuraiana	Rw1G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	164, 828
AccB1I	GGYRCC	1 cut(s)	202
AccII	CGCG	1 cut(s)	781
AccIII	TCCGGA	1 cut(s)	457
AciI	CCGC	3 cut(s)	39, 42, 781
AclWI	GGATC	2 cut(s)	328, 526
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	3 cut(s)	59, 140, 297
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	3 cut(s)	191, 912, 921
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	6 cut(s)	115, 146, 293, 439, 646, 788
AjiI	CACGTC	1 cut(s)	665
AjnI	CCWGG	3 cut(s)	24, 451, 534
Alw21I	GWGCWC	1 cut(s)	973
AlwI	GGATC	2 cut(s)	328, 526
AlwNI	CAGNNNCTG	1 cut(s)	932
Aor13HI	TCCGGA	1 cut(s)	457
AoxI	GGCC	2 cut(s)	22, 27
ApeKI	GCWGC	8 cut(s)	224, 281, 284, 353, 494, 497, 926, 929
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	3 cut(s)	326, 613, 821
AvaII	GGWCC	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	973
BbvI	GCAGC	8 cut(s)	236, 268, 271, 340, 481, 509, 916, 938
BccI	CCATC	4 cut(s)	171, 214, 311, 889
BciT130I	CCWGG	3 cut(s)	26, 453, 536
BclI	TGATCA	2 cut(s)	15, 594
BfaI	CTAG	1 cut(s)	737
BfmI	CTRYAG	2 cut(s)	495, 744
BfoI	RGCGCY	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	501
Bme1390I	CCNGG	3 cut(s)	26, 453, 536
Bme18I	GGWCC	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	3 cut(s)	26, 453, 536
BmsI	GCATC	2 cut(s)	236, 829
BpmI	CTGGAG	2 cut(s)	576, 592
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	1 cut(s)	811
BseAI	TCCGGA	1 cut(s)	457
BseBI	CCWGG	3 cut(s)	26, 453, 536
BseGI	GGATG	2 cut(s)	182, 900
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	245, 492
BseNI	ACTGG	1 cut(s)	811
BseRI	GAGGAG	1 cut(s)	498
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	8 cut(s)	236, 268, 271, 340, 481, 509, 916, 938
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	781
BshFI	GGCC	2 cut(s)	24, 29
BshNI	GGYRCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	973
BsiSI	CCGG	2 cut(s)	30, 458
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	532
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	24, 29
Bsp1286I	GDGCHC	2 cut(s)	221, 973
Bsp13I	TCCGGA	1 cut(s)	457
Bsp143I	GATC	4 cut(s)	15, 320, 531, 594
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	3 cut(s)	39, 42, 781
BspANI	GGCC	2 cut(s)	24, 29
BspCNI	CTCAG	2 cut(s)	244, 493
BspEI	TCCGGA	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	781
BspHI	TCATGA	2 cut(s)	750, 942
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	2 cut(s)	328, 526
BspQI	GCTCTTC	1 cut(s)	948
BspT107I	GGYRCC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	811
BssMI	GATC	4 cut(s)	15, 320, 531, 594
BssNI	GRCGYC	1 cut(s)	203
Bst2UI	CCWGG	3 cut(s)	26, 453, 536
Bst4CI	ACNGT	4 cut(s)	82, 186, 689, 748
Bst6I	CTCTTC	2 cut(s)	78, 948
BstACI	GRCGYC	1 cut(s)	203
BstAPI	GCANNNNNTGC	2 cut(s)	491, 625
BstC8I	GCNNGC	3 cut(s)	37, 131, 416
BstDEI	CTNAG	2 cut(s)	231, 501
BstF5I	GGATG	2 cut(s)	182, 900
BstFNI	CGCG	1 cut(s)	781
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	4 cut(s)	18, 323, 534, 597
BstMBI	GATC	4 cut(s)	15, 320, 531, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 491, 625
BstNI	CCWGG	3 cut(s)	26, 453, 536
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	24, 451, 534
BstSFI	CTRYAG	2 cut(s)	495, 744
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	781
BstV1I	GCAGC	8 cut(s)	236, 268, 271, 340, 481, 509, 916, 938
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	24, 29
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	665
BtsCI	GGATG	2 cut(s)	182, 900
BtsIMutI	CAGTG	1 cut(s)	694
Cac8I	GCNNGC	3 cut(s)	37, 131, 416
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	2 cut(s)	750, 942
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	455
CseI	GACGC	2 cut(s)	17, 851
Csp6I	GTAC	3 cut(s)	190, 911, 920
CviAII	CATG	7 cut(s)	170, 415, 527, 598, 616, 751, 943
CviQI	GTAC	3 cut(s)	190, 911, 920
DdeI	CTNAG	2 cut(s)	231, 501
DinI	GGCGCC	1 cut(s)	204
DpnI	GATC	4 cut(s)	17, 322, 533, 596
DpnII	GATC	4 cut(s)	15, 320, 531, 594
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	78, 948
EarI	CTCTTC	2 cut(s)	78, 948
EciI	GGCGGA	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	3 cut(s)	59, 140, 297
EcoRII	CCWGG	3 cut(s)	24, 451, 534
EgeI	GGCGCC	1 cut(s)	204
EheI	GGCGCC	1 cut(s)	204
FaeI	CATG	7 cut(s)	173, 418, 530, 601, 619, 754, 946
FalI	AAGNNNNNCTT	4 cut(s)	474, 506, 652, 684
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	7 cut(s)	169, 414, 526, 597, 615, 750, 942
FbaI	TGATCA	2 cut(s)	15, 594
FokI	GGATG	2 cut(s)	189, 907
FspBI	CTAG	1 cut(s)	737
GlaI	GCGC	1 cut(s)	204
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	2 cut(s)	576, 592
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	24, 29
HapII	CCGG	2 cut(s)	30, 458
HgaI	GACGC	2 cut(s)	17, 851
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	7 cut(s)	173, 418, 530, 601, 619, 754, 946
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HinfI	GANTC	2 cut(s)	45, 859
HpaII	CCGG	2 cut(s)	30, 458
HphI	GGTGA	3 cut(s)	326, 613, 821
Hpy166II	GTNNAC	4 cut(s)	95, 241, 384, 920
Hpy188I	TCNGA	5 cut(s)	7, 78, 137, 448, 841
Hpy188III	TCNNGA	7 cut(s)	265, 458, 476, 571, 586, 751, 943
Hpy8I	GTNNAC	4 cut(s)	95, 241, 384, 920
HpyAV	CCTTC	5 cut(s)	112, 167, 621, 673, 863
HpyCH4III	ACNGT	4 cut(s)	82, 186, 689, 748
HpyCH4IV	ACGT	3 cut(s)	106, 295, 664
HpyCH4V	TGCA	5 cut(s)	287, 418, 497, 619, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 491, 625
HpyF3I	CTNAG	2 cut(s)	231, 501
HpySE526I	ACGT	3 cut(s)	106, 295, 664
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	7 cut(s)	173, 418, 530, 601, 619, 754, 946
HspAI	GCGC	1 cut(s)	203
KasI	GGCGCC	1 cut(s)	202
Kpn2I	TCCGGA	1 cut(s)	457
Ksp22I	TGATCA	2 cut(s)	15, 594
Kzo9I	GATC	4 cut(s)	15, 320, 531, 594
LguI	GCTCTTC	1 cut(s)	948
LmnI	GCTCC	2 cut(s)	32, 460
Lsp1109I	GCAGC	8 cut(s)	236, 268, 271, 340, 481, 509, 916, 938
LweI	GCATC	2 cut(s)	236, 829
MaeI	CTAG	1 cut(s)	737
MaeII	ACGT	3 cut(s)	106, 295, 664
MaeIII	GTNAC	4 cut(s)	406, 694, 799, 809
MalI	GATC	4 cut(s)	17, 322, 533, 596
MboI	GATC	4 cut(s)	15, 320, 531, 594
MboII	GAAGA	7 cut(s)	65, 127, 330, 451, 658, 707, 965
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	2 cut(s)	221, 973
MluCI	AATT	1 cut(s)	620
Mly113I	GGCGCC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	6 cut(s)	81, 188, 516, 519, 569, 771
MroI	TCCGGA	1 cut(s)	457
MseI	TTAA	3 cut(s)	84, 948, 963
MspA1I	CMGCKG	2 cut(s)	500, 929
MspI	CCGG	2 cut(s)	30, 458
MspR9I	CCNGG	3 cut(s)	26, 453, 536
Mva1269I	GAATGC	1 cut(s)	336
MvaI	CCWGG	3 cut(s)	26, 453, 536
MvnI	CGCG	1 cut(s)	781
MwoI	GCNNNNNNNGC	3 cut(s)	281, 491, 625
NarI	GGCGCC	1 cut(s)	203
NdeII	GATC	4 cut(s)	15, 320, 531, 594
NlaIII	CATG	7 cut(s)	173, 418, 530, 601, 619, 754, 946
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	809
NspI	RCATGY	1 cut(s)	418
PaeI	GCATGC	1 cut(s)	418
PagI	TCATGA	2 cut(s)	750, 942
PciSI	GCTCTTC	1 cut(s)	948
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	45, 859
PfoI	TCCNGGA	1 cut(s)	534
PluTI	GGCGCC	1 cut(s)	206
PsiI	TTATAA	2 cut(s)	164, 828
Psp6I	CCWGG	3 cut(s)	24, 451, 534
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	3 cut(s)	24, 451, 534
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	455
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	932
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	2 cut(s)	500, 929
RsaI	GTAC	3 cut(s)	191, 912, 921
RsaNI	GTAC	3 cut(s)	190, 911, 920
SapI	GCTCTTC	1 cut(s)	948
SaqAI	TTAA	3 cut(s)	84, 948, 963
Sau3AI	GATC	4 cut(s)	15, 320, 531, 594
Sau96I	GGNCC	1 cut(s)	455
ScrFI	CCNGG	3 cut(s)	26, 453, 536
SduI	GDGCHC	2 cut(s)	221, 973
SfaNI	GCATC	2 cut(s)	236, 829
SfcI	CTRYAG	2 cut(s)	495, 744
SfoI	GGCGCC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
SphI	GCATGC	1 cut(s)	418
Sse9I	AATT	1 cut(s)	620
SsiI	CCGC	3 cut(s)	39, 42, 781
SspDI	GGCGCC	1 cut(s)	202
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	1 cut(s)	737
StyD4I	CCNGG	3 cut(s)	24, 451, 534
TaaI	ACNGT	4 cut(s)	82, 186, 689, 748
TaiI	ACGT	3 cut(s)	109, 298, 667
TasI	AATT	1 cut(s)	620
TatI	WGTACW	2 cut(s)	910, 919
TauI	GCSGC	2 cut(s)	42, 784
TfiI	GAWTC	2 cut(s)	45, 859
Tru1I	TTAA	3 cut(s)	84, 948, 963
Tru9I	TTAA	3 cut(s)	84, 948, 963
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	809
TseI	GCWGC	8 cut(s)	224, 281, 284, 353, 494, 497, 926, 929
Tsp45I	GTSAC	1 cut(s)	809
TspDTI	ATGAA	7 cut(s)	186, 330, 495, 564, 648, 882, 931
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	694
VpaK11BI	GGWCC	1 cut(s)	455
XceI	RCATGY	1 cut(s)	418
XspI	CTAG	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.