Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013172

Physical Location & Seq

Genomic Coordinates Reverse (-)

59667066 .. 59670774

Gene Structure 3709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G031560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTCGGACGCCGTGATCAATGGCCTCGCCGGCGCCGGCGGAGGGATCATCGCCCAGCTCATCACATATCCACTCCAGACTGTGAACACTCGTCAGCAAACGGAACGTGATCTGAAAAAGGAGAAGAGGAAGCTCGGAACTGTTGAACAAATAGGCCAGGTTATAAAGAATGAAGGATGGGAACGGTTGTACGGAGGTTTGACGCCGTCGTTGGTGGGAACAGCAGCATCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACAAGGCTGAAGTTGCTGCCCTTGAACGTAGTAAGTTGGGCATTGGTGATGGATCTGTTGGAATGCTCTCTTCGCTAGTGGTGGCTGCATTATCTGGGTGTGTGAATGTACTATTGACAAATCCTATATGGGTAGTTGTTACACGCATGCAGACTCATAGAAAAACTTCAAAGTCCCAGCCTGATCAGATGCTATCAACTGATCCAGATGAAGCAATTGTTGCTGCAGCTGAGCCTCCTCCCTTCGGGACTAGTCATGCGGTACAAGAAGTTTATGATGAAGGTGGATTTTTCGGTTTCTGGAGAGGTGTGAGTAATCCTTCCATGCAGTTTATGCTGTATGAAACTATGTTGAATAAGCTGAAGAAAAGACGTGCCTTGAGTAAGAAGAATAACAATGGTATTACTGCTGTAGAGATATTCCTGCTTGGTGCTTTGGCAAAACTAGGTGCTACTGTCGTGACATATCCTCTTTTAGTCGTGAAGGCGAGACTTCAAGCGAAACAGGTCACAACTGGTGACAAAAGGCATCATTATAAAGGAACTCTGGATGCCATTTTAAAGATGATTCGCTATGAAGGGTTCTATGGTTTCTACAAAGGGATGAGCACAAAAATAGTACAAAGTGTGCTCGCTGCTGCTGTTTTGTTCATGGTCAAGGAAGAACTCGTCAGGGGTGTTCGGTTCATGCTCACTAACAAAGCGAAATCAAAGCCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005779 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015230 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015858 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032535 GO:0034220 GO:0035349 GO:0035350 GO:0035352 GO:0042221 GO:0042493 GO:0042579 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044610 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0051724 GO:0055085 GO:0065007 GO:0065008 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0071840 GO:0072530 GO:0080121 GO:0080122 GO:0090066 GO:0098588 GO:0098655 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

329

Amino Acids

36.13

Weight (kDa)

9.8

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 90	1.9e-17	Mitochondrial carrier protein
Mito_carr	PF00153	110 - 202	1.2e-12	Mitochondrial carrier protein
Mito_carr	PF00153	225 - 314	1.5e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39970
fragaria_vesca	FvH4_7g24040 FvH4_7g24040
malus_domestica	MD01G1147600.v1.1 MD07G1214400.v1.1
prunus_persica	Prupe.2G246400_v2.0.a1
pyrus_communis	pycom07g19690
rosa_chinensis	RchiOBHm_Chr1g0369431
rosa_laevigata	RLG00000027131
rosa_multiflora	Rmu_sc0003612.1_g000019 Rmu_sc0006332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287660
rosa_rugosa	Rorug01G0350100
rosa_samantha	Rh1AG357700 Rh1BG321800 Rh1CG335500 Rh1DG352400
rosa_wichuraiana	Rw1G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	164, 804
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	2 cut(s)	39, 527
AclWI	GGATC	3 cut(s)	53, 328, 464
AcuI	CTGAAG	2 cut(s)	297, 650
AcyI	GRCGYC	3 cut(s)	9, 33, 203
AfaI	GTAC	4 cut(s)	191, 378, 531, 888
AfiI	CCNNNNNNNGG	2 cut(s)	42, 512
AgsI	TTSAA	5 cut(s)	146, 293, 438, 622, 764
AhlI	ACTAGT	1 cut(s)	518
AjiI	CACGTC	1 cut(s)	641
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	4 cut(s)	58, 133, 497, 628
AluI	AGCT	4 cut(s)	58, 133, 497, 628
Alw21I	GWGCWC	2 cut(s)	878, 900
Alw26I	GTCTC	1 cut(s)	751
AlwI	GGATC	3 cut(s)	53, 328, 464
AoxI	GGCC	2 cut(s)	22, 154
ApeKI	GCWGC	7 cut(s)	224, 284, 353, 491, 494, 902, 905
Asp700I	GAANNNNTTC	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	326, 797
BanI	GGYRCC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	878, 900
BbvI	GCAGC	7 cut(s)	236, 271, 340, 478, 506, 889, 892
BccI	CCATC	2 cut(s)	171, 311
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	158
BclI	TGATCA	2 cut(s)	15, 451
BcoDI	GTCTC	1 cut(s)	751
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	3 cut(s)	344, 519, 713
BfmI	CTRYAG	2 cut(s)	492, 678
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	7 cut(s)	225, 285, 354, 492, 495, 903, 906
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	7 cut(s)	226, 286, 355, 493, 496, 904, 907
Bme1390I	CCNGG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	641
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	4 cut(s)	236, 447, 805, 808
BpmI	CTGGAG	2 cut(s)	59, 589
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	667
BsaHI	GRCGYC	3 cut(s)	9, 33, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 512
Bse118I	RCCGGY	2 cut(s)	29, 35
Bse1I	ACTGG	1 cut(s)	787
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	3 cut(s)	182, 823, 876
BseLI	CCNNNNNNNGG	2 cut(s)	42, 512
BseMII	CTCAG	2 cut(s)	245, 489
BseNI	ACTGG	1 cut(s)	787
BseRI	GAGGAG	1 cut(s)	495
BseXI	GCAGC	7 cut(s)	236, 271, 340, 478, 506, 889, 892
BseYI	CCCAGC	2 cut(s)	54, 444
BshFI	GGCC	2 cut(s)	24, 156
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	2 cut(s)	878, 900
BsiSI	CCGG	2 cut(s)	30, 36
BslFI	GGGAC	2 cut(s)	427, 529
BslI	CCNNNNNNNGG	2 cut(s)	42, 512
BsmAI	GTCTC	1 cut(s)	751
BsmFI	GGGAC	2 cut(s)	427, 529
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	24, 156
Bsp1286I	GDGCHC	2 cut(s)	878, 900
Bsp143I	GATC	6 cut(s)	15, 45, 109, 320, 451, 469
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	2 cut(s)	39, 527
BspANI	GGCC	2 cut(s)	24, 156
BspCNI	CTCAG	2 cut(s)	244, 490
BspLI	GGNNCC	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	3 cut(s)	53, 328, 464
BspT107I	GGYRCC	1 cut(s)	32
BsrFI	RCCGGY	2 cut(s)	29, 35
BsrI	ACTGG	1 cut(s)	787
BssAI	RCCGGY	2 cut(s)	29, 35
BssMI	GATC	6 cut(s)	15, 45, 109, 320, 451, 469
BssNI	GRCGYC	3 cut(s)	9, 33, 203
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	4 cut(s)	82, 142, 186, 724
Bst6I	CTCTTC	2 cut(s)	119, 343
BstACI	GRCGYC	3 cut(s)	9, 33, 203
BstAPI	GCANNNNNTGC	2 cut(s)	488, 601
BstC8I	GCNNGC	4 cut(s)	31, 37, 416, 900
BstDEI	CTNAG	2 cut(s)	231, 498
BstF5I	GGATG	3 cut(s)	182, 823, 876
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	6 cut(s)	18, 48, 112, 323, 454, 472
BstMAI	GTCTC	1 cut(s)	751
BstMBI	GATC	6 cut(s)	15, 45, 109, 320, 451, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 281, 340, 488, 601
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	2 cut(s)	492, 678
BstV1I	GCAGC	7 cut(s)	236, 271, 340, 478, 506, 889, 892
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	24, 156
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	641
BtsCI	GGATG	3 cut(s)	182, 823, 876
Cac8I	GCNNGC	4 cut(s)	31, 37, 416, 900
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	2 cut(s)	29, 35
CseI	GACGC	2 cut(s)	17, 211
Csp6I	GTAC	4 cut(s)	190, 377, 530, 887
CviAII	CATG	5 cut(s)	415, 524, 592, 919, 955
CviQI	GTAC	4 cut(s)	190, 377, 530, 887
DdeI	CTNAG	2 cut(s)	231, 498
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	6 cut(s)	17, 47, 111, 322, 453, 471
DpnII	GATC	6 cut(s)	15, 45, 109, 320, 451, 469
DraI	TTTAAA	1 cut(s)	828
Eam1104I	CTCTTC	2 cut(s)	119, 343
EarI	CTCTTC	2 cut(s)	119, 343
EciI	GGCGGA	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	297, 650
EcoRII	CCWGG	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	5 cut(s)	418, 527, 595, 922, 958
FaqI	GGGAC	2 cut(s)	427, 529
FatI	CATG	5 cut(s)	414, 523, 591, 918, 954
FbaI	TGATCA	2 cut(s)	15, 451
Fnu4HI	GCNGC	7 cut(s)	225, 285, 354, 492, 495, 903, 906
FokI	GGATG	3 cut(s)	189, 830, 883
Fsp4HI	GCNGC	7 cut(s)	225, 285, 354, 492, 495, 903, 906
FspBI	CTAG	3 cut(s)	344, 519, 713
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	7 cut(s)	225, 285, 354, 492, 495, 903, 906
GsaI	CCCAGC	2 cut(s)	58, 448
GsuI	CTGGAG	2 cut(s)	59, 589
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	24, 156
HapII	CCGG	2 cut(s)	30, 36
HgaI	GACGC	2 cut(s)	17, 211
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	3 cut(s)	9, 33, 203
Hin1II	CATG	5 cut(s)	418, 527, 595, 922, 958
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	421, 835
HpaII	CCGG	2 cut(s)	30, 36
HphI	GGTGA	2 cut(s)	326, 797
Hpy166II	GTNNAC	2 cut(s)	85, 241
Hpy188I	TCNGA	4 cut(s)	7, 114, 137, 456
Hpy188III	TCNNGA	8 cut(s)	76, 265, 473, 514, 568, 727, 748, 815
Hpy8I	GTNNAC	2 cut(s)	85, 241
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	6 cut(s)	167, 520, 542, 597, 745, 839
HpyCH4III	ACNGT	4 cut(s)	82, 142, 186, 724
HpyCH4IV	ACGT	3 cut(s)	106, 295, 640
HpyCH4V	TGCA	4 cut(s)	356, 418, 494, 595
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 281, 340, 488, 601
HpyF3I	CTNAG	2 cut(s)	231, 498
HpySE526I	ACGT	3 cut(s)	106, 295, 640
Hsp92I	GRCGYC	3 cut(s)	9, 33, 203
Hsp92II	CATG	5 cut(s)	418, 527, 595, 922, 958
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
KroI	GCCGGC	2 cut(s)	29, 35
KroNI	GCCGGC	2 cut(s)	31, 37
Ksp22I	TGATCA	2 cut(s)	15, 451
Kzo9I	GATC	6 cut(s)	15, 45, 109, 320, 451, 469
Lsp1109I	GCAGC	7 cut(s)	236, 271, 340, 478, 506, 889, 892
LweI	GCATC	4 cut(s)	236, 447, 805, 808
MaeI	CTAG	3 cut(s)	344, 519, 713
MaeII	ACGT	3 cut(s)	106, 295, 640
MaeIII	GTNAC	4 cut(s)	406, 727, 775, 785
MalI	GATC	6 cut(s)	17, 47, 111, 322, 453, 471
MboI	GATC	6 cut(s)	15, 45, 109, 320, 451, 469
MboII	GAAGA	5 cut(s)	136, 330, 643, 667, 941
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	2 cut(s)	878, 900
MluCI	AATT	1 cut(s)	483
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	8 cut(s)	35, 35, 120, 188, 513, 516, 566, 747
MreI	CGCCGGCG	2 cut(s)	29, 35
MroNI	GCCGGC	2 cut(s)	29, 35
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	1 cut(s)	827
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	30, 36
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	5 cut(s)	30, 281, 340, 488, 601
NaeI	GCCGGC	2 cut(s)	31, 37
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	6 cut(s)	15, 45, 109, 320, 451, 469
NgoMIV	GCCGGC	2 cut(s)	29, 35
NlaIII	CATG	5 cut(s)	418, 527, 595, 922, 958
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	3 cut(s)	727, 775, 785
NspI	RCATGY	1 cut(s)	418
PaeI	GCATGC	1 cut(s)	418
PctI	GAATGC	1 cut(s)	336
PdiI	GCCGGC	2 cut(s)	31, 37
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	835
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	7 cut(s)	226, 286, 355, 493, 496, 904, 907
PleI	GAGTC	1 cut(s)	415
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	415
PsiI	TTATAA	2 cut(s)	164, 804
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	2 cut(s)	54, 444
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	320
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	4 cut(s)	191, 378, 531, 888
RsaNI	GTAC	4 cut(s)	190, 377, 530, 887
SaqAI	TTAA	1 cut(s)	827
SatI	GCNGC	7 cut(s)	225, 285, 354, 492, 495, 903, 906
Sau3AI	GATC	6 cut(s)	15, 45, 109, 320, 451, 469
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	878, 900
SfaNI	GCATC	4 cut(s)	236, 447, 805, 808
SfcI	CTRYAG	2 cut(s)	492, 678
SfoI	GGCGCC	1 cut(s)	34
SgrAI	CRCCGGYG	2 cut(s)	29, 35
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
SpeI	ACTAGT	1 cut(s)	518
SphI	GCATGC	1 cut(s)	418
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	2 cut(s)	39, 527
SspDI	GGCGCC	1 cut(s)	32
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	3 cut(s)	344, 519, 713
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	82, 142, 186, 724
TaiI	ACGT	3 cut(s)	109, 298, 643
TasI	AATT	1 cut(s)	483
TatI	WGTACW	2 cut(s)	376, 886
TfiI	GAWTC	1 cut(s)	835
Tru1I	TTAA	1 cut(s)	827
Tru9I	TTAA	1 cut(s)	827
TseFI	GTSAC	3 cut(s)	727, 775, 785
TseI	GCWGC	7 cut(s)	224, 284, 353, 491, 494, 902, 905
Tsp45I	GTSAC	3 cut(s)	727, 775, 785
TspDTI	ATGAA	7 cut(s)	186, 492, 561, 624, 858, 907, 943
TspGWI	ACGGA	2 cut(s)	116, 207
Tth111I	GACNNNGTC	1 cut(s)	205
XceI	RCATGY	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	3 cut(s)	344, 519, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.