Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006332.1

Orthogroup ID

OG0013172

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3271

Gene Structure 3271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006332.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 745 bp

gaacaaggctgaagttgctgcccttgaacgtagtaagttgggcattggtgatggatctgttggaatgctctcttcactagtggtggctgcattatctgggtgtgtgaatgtactattgacaaatcctatatgggtagttgttacacgcatgcagactcatagaaaaacttcaaagtcccagcctgatcagatgctatcaactgatccagatgaagcaattgttgctgcagctgagcctcctcccttcgggactagtcatgcggtacaagaagtttatgatgaaggtggatttttgggtttctggagaggtgtatttccaacattgatcatggtgagtaatccttccatgcagtttatgctgtatgaaactatgttgaataagctgaagaaaagacgtgccttgagtaagaagaataacaatggtattactgctgtagagatattcctgcttggtgctttggcaaaactaggtgctactgtcgtgacatatcctcttttagtcgtgaaggcgagacttcaagcgaaacaggtcacaactggtgacaaaaggcatcattataaaggaactctggatgccattttaaagatgattcgctatgaagggttctatggtttctacaaagggatgagcacaaaaatagtacaaagtgtactcgccgctgctgttttgttcatggtcaaggaagaactcgtcaggggtgttcggttcatgctcactaacaaagcgaaatcaaagcctccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005779 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015230 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015858 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032535 GO:0034220 GO:0035349 GO:0035350 GO:0035352 GO:0042221 GO:0042493 GO:0042579 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044610 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0051724 GO:0055085 GO:0065007 GO:0065008 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0071840 GO:0072530 GO:0080121 GO:0080122 GO:0090066 GO:0098588 GO:0098655 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

247

Amino Acids

27.08

Weight (kDa)

9.88

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39970
fragaria_vesca	FvH4_7g24040 FvH4_7g24040
malus_domestica	MD01G1147600.v1.1 MD07G1214400.v1.1
prunus_persica	Prupe.2G246400_v2.0.a1
pyrus_communis	pycom07g19690
rosa_chinensis	RchiOBHm_Chr1g0369431
rosa_laevigata	RLG00000027131
rosa_multiflora	Rmu_sc0003612.1_g000019 Rmu_sc0006332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287660
rosa_rugosa	Rorug01G0350100
rosa_samantha	Rh1AG357700 Rh1BG321800 Rh1CG335500 Rh1DG352400
rosa_wichuraiana	Rw1G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	559
AciI	CCGC	2 cut(s)	261, 658
AclWI	GGATC	2 cut(s)	62, 198
AcuI	CTGAAG	2 cut(s)	31, 405
AfaI	GTAC	4 cut(s)	112, 265, 643, 652
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	4 cut(s)	27, 172, 377, 519
AhlI	ACTAGT	2 cut(s)	77, 252
AjiI	CACGTC	1 cut(s)	396
AluBI	AGCT	2 cut(s)	231, 383
AluI	AGCT	2 cut(s)	231, 383
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	2 cut(s)	62, 198
ApeKI	GCWGC	5 cut(s)	18, 87, 225, 228, 660
Asp700I	GAANNNNTTC	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	60, 344, 552
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	5 cut(s)	5, 74, 212, 240, 647
BccI	CCATC	1 cut(s)	45
BclI	TGATCA	2 cut(s)	185, 325
BcoDI	GTCTC	1 cut(s)	506
BcuI	ACTAGT	2 cut(s)	77, 252
BfaI	CTAG	3 cut(s)	78, 253, 468
BfmI	CTRYAG	2 cut(s)	226, 433
BisI	GCNGC	6 cut(s)	19, 88, 226, 229, 658, 661
BlpI	GCTNAGC	1 cut(s)	232
BlsI	GCNGC	6 cut(s)	20, 89, 227, 230, 659, 662
BmgBI	CACGTC	1 cut(s)	396
BmsI	GCATC	3 cut(s)	181, 560, 563
BpmI	CTGGAG	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	542
BseGI	GGATG	2 cut(s)	578, 631
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	5 cut(s)	5, 74, 212, 240, 647
BseYI	CCCAGC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	633
BslFI	GGGAC	2 cut(s)	161, 263
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	2 cut(s)	161, 263
BsmI	GAATGC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	4 cut(s)	54, 185, 203, 325
Bsp1720I	GCTNAGC	1 cut(s)	232
BspACI	CCGC	2 cut(s)	261, 658
BspCNI	CTCAG	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	230
BspPI	GGATC	2 cut(s)	62, 198
BsrI	ACTGG	1 cut(s)	542
BssMI	GATC	4 cut(s)	54, 185, 203, 325
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	77
BstAPI	GCANNNNNTGC	2 cut(s)	222, 356
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	578, 631
BstKTI	GATC	4 cut(s)	57, 188, 206, 328
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	4 cut(s)	54, 185, 203, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 222, 356
BstNSI	RCATGY	1 cut(s)	152
BstSFI	CTRYAG	2 cut(s)	226, 433
BstV1I	GCAGC	5 cut(s)	5, 74, 212, 240, 647
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	578, 631
Cac8I	GCNNGC	1 cut(s)	150
Csp6I	GTAC	4 cut(s)	111, 264, 642, 651
CviAII	CATG	6 cut(s)	149, 258, 329, 347, 674, 710
CviJI	RGCY	7 cut(s)	9, 87, 182, 231, 236, 383, 737
CviKI_1	RGCY	7 cut(s)	9, 87, 182, 231, 236, 383, 737
CviQI	GTAC	4 cut(s)	111, 264, 642, 651
DdeI	CTNAG	1 cut(s)	232
DpnI	GATC	4 cut(s)	56, 187, 205, 327
DpnII	GATC	4 cut(s)	54, 185, 203, 325
DraI	TTTAAA	1 cut(s)	583
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	31, 405
FaeI	CATG	6 cut(s)	152, 261, 332, 350, 677, 713
FaqI	GGGAC	2 cut(s)	161, 263
FatI	CATG	6 cut(s)	148, 257, 328, 346, 673, 709
FbaI	TGATCA	2 cut(s)	185, 325
Fnu4HI	GCNGC	6 cut(s)	19, 88, 226, 229, 658, 661
FokI	GGATG	2 cut(s)	585, 638
Fsp4HI	GCNGC	6 cut(s)	19, 88, 226, 229, 658, 661
FspBI	CTAG	3 cut(s)	78, 253, 468
GluI	GCNGC	6 cut(s)	19, 88, 226, 229, 658, 661
GsaI	CCCAGC	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	323
Hin1II	CATG	6 cut(s)	152, 261, 332, 350, 677, 713
HinfI	GANTC	2 cut(s)	155, 590
HphI	GGTGA	3 cut(s)	60, 344, 552
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	6 cut(s)	207, 248, 302, 482, 503, 570
Hpy8I	GTNNAC	1 cut(s)	651
HpyAV	CCTTC	5 cut(s)	254, 276, 352, 500, 594
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	2 cut(s)	29, 395
HpyCH4V	TGCA	4 cut(s)	90, 152, 228, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 222, 356
HpyF3I	CTNAG	1 cut(s)	232
HpySE526I	ACGT	2 cut(s)	29, 395
Hsp92II	CATG	6 cut(s)	152, 261, 332, 350, 677, 713
Ksp22I	TGATCA	2 cut(s)	185, 325
Kzo9I	GATC	4 cut(s)	54, 185, 203, 325
Lsp1109I	GCAGC	5 cut(s)	5, 74, 212, 240, 647
LweI	GCATC	3 cut(s)	181, 560, 563
MaeI	CTAG	3 cut(s)	78, 253, 468
MaeII	ACGT	2 cut(s)	29, 395
MaeIII	GTNAC	4 cut(s)	140, 482, 530, 540
MalI	GATC	4 cut(s)	56, 187, 205, 327
MboI	GATC	4 cut(s)	54, 185, 203, 325
MboII	GAAGA	4 cut(s)	64, 398, 422, 696
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	41, 342
MnlI	CCTC	4 cut(s)	247, 250, 300, 502
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	231, 660
MunI	CAATTG	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	70
MwoI	GCNNNNNNNGC	3 cut(s)	15, 222, 356
NdeII	GATC	4 cut(s)	54, 185, 203, 325
NlaIII	CATG	6 cut(s)	152, 261, 332, 350, 677, 713
NmuCI	GTSAC	3 cut(s)	482, 530, 540
NspI	RCATGY	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	152
PctI	GAATGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	590
PkrI	GCNGC	6 cut(s)	20, 89, 227, 230, 659, 662
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PsiI	TTATAA	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	231
RsaI	GTAC	4 cut(s)	112, 265, 643, 652
RsaNI	GTAC	4 cut(s)	111, 264, 642, 651
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	6 cut(s)	19, 88, 226, 229, 658, 661
Sau3AI	GATC	4 cut(s)	54, 185, 203, 325
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	8 cut(s)	32, 233, 287, 311, 385, 398, 473, 532
SfaNI	GCATC	3 cut(s)	181, 560, 563
SfcI	CTRYAG	2 cut(s)	226, 433
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SpeI	ACTAGT	2 cut(s)	77, 252
SphI	GCATGC	1 cut(s)	152
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	2 cut(s)	261, 658
SspMI	CTAG	3 cut(s)	78, 253, 468
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	2 cut(s)	32, 398
TasI	AATT	1 cut(s)	217
TatI	WGTACW	3 cut(s)	110, 641, 650
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TseFI	GTSAC	3 cut(s)	482, 530, 540
TseI	GCWGC	5 cut(s)	18, 87, 225, 228, 660
Tsp45I	GTSAC	3 cut(s)	482, 530, 540
TspDTI	ATGAA	6 cut(s)	226, 295, 379, 613, 662, 698
XceI	RCATGY	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	3 cut(s)	78, 253, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.