Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013172

Physical Location & Seq

Genomic Coordinates Reverse (-)

18611133 .. 18615687

Gene Structure 4555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCGGACGCCGTGATCAATGGCCTCGCCGGCGCCGGCGGAGGGATCATCGCCCAGCTCATCACATATCCACTCCAGACTGTGAACACTCGTCAGCAAACGGAACGTGATCTGAAGAAGGCGAGGAGGAAGCTCGGAACTGTTGGCCAAATGTGCCAGGTAATAAGGAATGAAGGATGGGAGAGGTTGTACGGAGGTTTGGCGCCGTCGTTGGTGGGAACAGCAGCGTCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACAAGGCTCAAGTTGCTGCCCTTGAACGTAGTAAGATGGGCATTGGTGATGGATCAGTTGGCATGCTCTCTTCGCTAGTGGTGGCTGCCTTATCTGGGTGTGTGAATGTACTTTTGACAAATCCTATTTGGGTAGTTGTTACACGCATGCAGACGCATCGAAAAATCTCAAAGAAGTCCCACCCTGATCAGATGCTATCAACTGATCCAGAGGAAGCAATTGTTTCTGCAGCTGAGCCTCCTCCCTTTGGGACTACTCATGCGGTACAGGAAGTTTTTGGTGAAGGTGGATTTTTTGGTTTCTGGAGAGGGGTATTTCCCACATTGATCATGGTGAGTAATCCTTCCATGCAGTTTATGCTGTATGAAACTATGTTGAAGAAGCTGAAGAAAAGACGTGCCTTGAGTAACAAAACTAACAATGGAGTTACTGCTGTAGAGATATTCCTGCTTGGTGCTTTGGCAAAACTAGGTGCTACTGTTGTGACATATCCTCTATTAGTCGTGAAGTCGAGACTTCAAGCGAAACAGGTTACAACTGGTGACAAAAGGCATCATTATAAAGGAACTTTGGATGCCATTTTGAAGATGATTCGCTACGAAGGGTTACATGGTTTCTACAAAGGGATGAGCACAAAAATAGTACAAAGTGTACTTGCTGCCGCTGTTTTGTTCATGGTCAAGGAAGAACTCGTCAAGGGTGTCCGGTTCATGCTCACTAACAAAGTGAAATCAAAGCCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005779 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015230 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015858 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0032535 GO:0034220 GO:0035349 GO:0035350 GO:0035352 GO:0042221 GO:0042493 GO:0042579 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044610 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0051724 GO:0055085 GO:0065007 GO:0065008 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0071840 GO:0072530 GO:0080121 GO:0080122 GO:0090066 GO:0098588 GO:0098655 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

338

Amino Acids

36.96

Weight (kDa)

10.02

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 90	4.5e-16	Mitochondrial carrier protein
Mito_carr	PF00153	110 - 220	5.1e-17	Mitochondrial carrier protein
Mito_carr	PF00153	233 - 322	1.3e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39970
fragaria_vesca	FvH4_7g24040 FvH4_7g24040
malus_domestica	MD01G1147600.v1.1 MD07G1214400.v1.1
prunus_persica	Prupe.2G246400_v2.0.a1
pyrus_communis	pycom07g19690
rosa_chinensis	RchiOBHm_Chr1g0369431
rosa_laevigata	RLG00000027131
rosa_multiflora	Rmu_sc0003612.1_g000019 Rmu_sc0006332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287660
rosa_rugosa	Rorug01G0350100
rosa_samantha	Rh1AG357700 Rh1BG321800 Rh1CG335500 Rh1DG352400
rosa_wichuraiana	Rw1G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AccB1I	GGYRCC	2 cut(s)	32, 202
AciI	CCGC	3 cut(s)	39, 530, 930
AclWI	GGATC	3 cut(s)	53, 328, 467
AcoI	YGGCCR	1 cut(s)	145
AcuI	CTGAAG	2 cut(s)	134, 674
AcyI	GRCGYC	3 cut(s)	9, 33, 203
AfaI	GTAC	5 cut(s)	191, 378, 534, 912, 921
AfiI	CCNNNNNNNGG	3 cut(s)	42, 363, 515
AgsI	TTSAA	4 cut(s)	293, 646, 788, 853
AjiI	CACGTC	1 cut(s)	665
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	4 cut(s)	58, 133, 500, 652
AluI	AGCT	4 cut(s)	58, 133, 500, 652
Alw21I	GWGCWC	1 cut(s)	902
Alw26I	GTCTC	2 cut(s)	234, 775
AlwI	GGATC	3 cut(s)	53, 328, 467
AoxI	GGCC	2 cut(s)	22, 145
ApeKI	GCWGC	5 cut(s)	224, 284, 353, 497, 926
AspLEI	GCGC	2 cut(s)	35, 205
AsuHPI	GGTGA	4 cut(s)	326, 560, 613, 821
BalI	TGGCCA	1 cut(s)	147
BanI	GGYRCC	2 cut(s)	32, 202
Bbv12I	GWGCWC	1 cut(s)	902
BbvI	GCAGC	5 cut(s)	236, 271, 340, 509, 913
BccI	CCATC	3 cut(s)	171, 298, 311
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	1 cut(s)	158
BclI	TGATCA	3 cut(s)	15, 454, 594
BcoDI	GTCTC	2 cut(s)	234, 775
BfaI	CTAG	2 cut(s)	344, 737
BfmI	CTRYAG	2 cut(s)	495, 702
BfoI	RGCGCY	2 cut(s)	36, 206
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	6 cut(s)	225, 285, 354, 498, 927, 930
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	6 cut(s)	226, 286, 355, 499, 928, 931
Bme1390I	CCNGG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	665
BmiI	GGNNCC	2 cut(s)	34, 204
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	4 cut(s)	433, 450, 829, 832
BpmI	CTGGAG	2 cut(s)	59, 592
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	2 cut(s)	261, 691
BsaHI	GRCGYC	3 cut(s)	9, 33, 203
BsaWI	WCCGGW	1 cut(s)	972
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 363, 515
Bse118I	RCCGGY	2 cut(s)	29, 35
Bse1I	ACTGG	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	3 cut(s)	182, 847, 900
BseLI	CCNNNNNNNGG	3 cut(s)	42, 363, 515
BseMII	CTCAG	2 cut(s)	245, 492
BseNI	ACTGG	1 cut(s)	811
BseRI	GAGGAG	2 cut(s)	139, 498
BseXI	GCAGC	5 cut(s)	236, 271, 340, 509, 913
BseYI	CCCAGC	1 cut(s)	54
BshFI	GGCC	2 cut(s)	24, 147
BshNI	GGYRCC	2 cut(s)	32, 202
BsiHKAI	GWGCWC	1 cut(s)	902
BsiSI	CCGG	3 cut(s)	30, 36, 973
BslFI	GGGAC	2 cut(s)	430, 532
BslI	CCNNNNNNNGG	3 cut(s)	42, 363, 515
BsmAI	GTCTC	2 cut(s)	234, 775
BsmBI	CGTCTC	1 cut(s)	234
BsmFI	GGGAC	2 cut(s)	430, 532
BsnI	GGCC	2 cut(s)	24, 147
Bsp1286I	GDGCHC	1 cut(s)	902
Bsp143I	GATC	7 cut(s)	15, 45, 109, 320, 454, 472, 594
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	3 cut(s)	39, 530, 930
BspANI	GGCC	2 cut(s)	24, 147
BspCNI	CTCAG	2 cut(s)	244, 493
BspLI	GGNNCC	2 cut(s)	34, 204
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	3 cut(s)	53, 328, 467
BspT107I	GGYRCC	2 cut(s)	32, 202
BsrFI	RCCGGY	2 cut(s)	29, 35
BsrI	ACTGG	1 cut(s)	811
BssAI	RCCGGY	2 cut(s)	29, 35
BssMI	GATC	7 cut(s)	15, 45, 109, 320, 454, 472, 594
BssNI	GRCGYC	3 cut(s)	9, 33, 203
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	3 cut(s)	82, 142, 748
Bst6I	CTCTTC	1 cut(s)	343
BstACI	GRCGYC	3 cut(s)	9, 33, 203
BstAPI	GCANNNNNTGC	1 cut(s)	625
BstC8I	GCNNGC	4 cut(s)	31, 37, 332, 416
BstDEI	CTNAG	2 cut(s)	231, 501
BstF5I	GGATG	3 cut(s)	182, 847, 900
BstH2I	RGCGCY	2 cut(s)	36, 206
BstHHI	GCGC	2 cut(s)	35, 205
BstKTI	GATC	7 cut(s)	18, 48, 112, 323, 457, 475, 597
BstMAI	GTCTC	2 cut(s)	234, 775
BstMBI	GATC	7 cut(s)	15, 45, 109, 320, 454, 472, 594
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 153, 281, 340, 625
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	2 cut(s)	334, 418
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	2 cut(s)	495, 702
BstV1I	GCAGC	5 cut(s)	236, 271, 340, 509, 913
BsuRI	GGCC	2 cut(s)	24, 147
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	665
BtsCI	GGATG	3 cut(s)	182, 847, 900
Cac8I	GCNNGC	4 cut(s)	31, 37, 332, 416
CfoI	GCGC	2 cut(s)	35, 205
Cfr10I	RCCGGY	2 cut(s)	29, 35
CseI	GACGC	3 cut(s)	17, 216, 430
Csp6I	GTAC	5 cut(s)	190, 377, 533, 911, 920
CviAII	CATG	8 cut(s)	331, 415, 527, 598, 616, 878, 943, 979
CviQI	GTAC	5 cut(s)	190, 377, 533, 911, 920
DdeI	CTNAG	2 cut(s)	231, 501
DinI	GGCGCC	2 cut(s)	34, 204
DpnI	GATC	7 cut(s)	17, 47, 111, 322, 456, 474, 596
DpnII	GATC	7 cut(s)	15, 45, 109, 320, 454, 472, 594
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	134, 674
EcoRII	CCWGG	1 cut(s)	156
EgeI	GGCGCC	2 cut(s)	34, 204
EheI	GGCGCC	2 cut(s)	34, 204
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	8 cut(s)	334, 418, 530, 601, 619, 881, 946, 982
FaqI	GGGAC	2 cut(s)	430, 532
FatI	CATG	8 cut(s)	330, 414, 526, 597, 615, 877, 942, 978
FbaI	TGATCA	3 cut(s)	15, 454, 594
Fnu4HI	GCNGC	6 cut(s)	225, 285, 354, 498, 927, 930
FokI	GGATG	3 cut(s)	189, 854, 907
Fsp4HI	GCNGC	6 cut(s)	225, 285, 354, 498, 927, 930
FspBI	CTAG	2 cut(s)	344, 737
GlaI	GCGC	2 cut(s)	34, 204
GluI	GCNGC	6 cut(s)	225, 285, 354, 498, 927, 930
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	2 cut(s)	59, 592
HaeII	RGCGCY	2 cut(s)	36, 206
HaeIII	GGCC	2 cut(s)	24, 147
HapII	CCGG	3 cut(s)	30, 36, 973
HgaI	GACGC	3 cut(s)	17, 216, 430
HhaI	GCGC	2 cut(s)	35, 205
Hin1I	GRCGYC	3 cut(s)	9, 33, 203
Hin1II	CATG	8 cut(s)	334, 418, 530, 601, 619, 881, 946, 982
Hin6I	GCGC	2 cut(s)	33, 203
HinP1I	GCGC	2 cut(s)	33, 203
HinfI	GANTC	1 cut(s)	859
HpaII	CCGG	3 cut(s)	30, 36, 973
HphI	GGTGA	4 cut(s)	326, 560, 613, 821
Hpy166II	GTNNAC	3 cut(s)	85, 241, 920
Hpy188I	TCNGA	4 cut(s)	7, 114, 137, 459
Hpy188III	TCNNGA	6 cut(s)	76, 265, 476, 571, 772, 780
Hpy8I	GTNNAC	3 cut(s)	85, 241, 920
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	5 cut(s)	112, 167, 545, 621, 863
HpyCH4III	ACNGT	3 cut(s)	82, 142, 748
HpyCH4IV	ACGT	3 cut(s)	106, 295, 664
HpyCH4V	TGCA	3 cut(s)	418, 497, 619
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 153, 281, 340, 625
HpyF3I	CTNAG	2 cut(s)	231, 501
HpySE526I	ACGT	3 cut(s)	106, 295, 664
Hsp92I	GRCGYC	3 cut(s)	9, 33, 203
Hsp92II	CATG	8 cut(s)	334, 418, 530, 601, 619, 881, 946, 982
HspAI	GCGC	2 cut(s)	33, 203
KasI	GGCGCC	2 cut(s)	32, 202
KroI	GCCGGC	2 cut(s)	29, 35
KroNI	GCCGGC	2 cut(s)	31, 37
Ksp22I	TGATCA	3 cut(s)	15, 454, 594
Kzo9I	GATC	7 cut(s)	15, 45, 109, 320, 454, 472, 594
Lsp1109I	GCAGC	5 cut(s)	236, 271, 340, 509, 913
LweI	GCATC	4 cut(s)	433, 450, 829, 832
MaeI	CTAG	2 cut(s)	344, 737
MaeII	ACGT	3 cut(s)	106, 295, 664
MaeIII	GTNAC	7 cut(s)	406, 674, 694, 751, 799, 809, 873
MalI	GATC	7 cut(s)	17, 47, 111, 322, 456, 474, 596
MboI	GATC	7 cut(s)	15, 45, 109, 320, 454, 472, 594
MboII	GAAGA	6 cut(s)	127, 330, 658, 667, 865, 965
MfeI	CAATTG	1 cut(s)	486
MhlI	GDGCHC	1 cut(s)	902
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	1 cut(s)	486
MluNI	TGGCCA	1 cut(s)	147
Mly113I	GGCGCC	2 cut(s)	33, 203
Mox20I	TGGCCA	1 cut(s)	147
MreI	CGCCGGCG	2 cut(s)	29, 35
MroNI	GCCGGC	2 cut(s)	29, 35
MscI	TGGCCA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	147
MspA1I	CMGCKG	2 cut(s)	500, 932
MspI	CCGG	3 cut(s)	30, 36, 973
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	5 cut(s)	30, 153, 281, 340, 625
NaeI	GCCGGC	2 cut(s)	31, 37
NarI	GGCGCC	2 cut(s)	33, 203
NdeII	GATC	7 cut(s)	15, 45, 109, 320, 454, 472, 594
NgoMIV	GCCGGC	2 cut(s)	29, 35
NlaIII	CATG	8 cut(s)	334, 418, 530, 601, 619, 881, 946, 982
NlaIV	GGNNCC	2 cut(s)	34, 204
NmuCI	GTSAC	2 cut(s)	751, 809
NspI	RCATGY	2 cut(s)	334, 418
PaeI	GCATGC	2 cut(s)	334, 418
PdiI	GCCGGC	2 cut(s)	31, 37
PfeI	GAWTC	1 cut(s)	859
PkrI	GCNGC	6 cut(s)	226, 286, 355, 499, 928, 931
PluTI	GGCGCC	2 cut(s)	36, 206
PsiI	TTATAA	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	34, 204
PstI	CTGCAG	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	5 cut(s)	191, 378, 534, 912, 921
RsaNI	GTAC	5 cut(s)	190, 377, 533, 911, 920
SatI	GCNGC	6 cut(s)	225, 285, 354, 498, 927, 930
Sau3AI	GATC	7 cut(s)	15, 45, 109, 320, 454, 472, 594
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	902
SfaNI	GCATC	4 cut(s)	433, 450, 829, 832
SfcI	CTRYAG	2 cut(s)	495, 702
SfoI	GGCGCC	2 cut(s)	34, 204
SgrAI	CRCCGGYG	2 cut(s)	29, 35
SmlI	CTYRAG	2 cut(s)	276, 670
SmoI	CTYRAG	2 cut(s)	276, 670
SphI	GCATGC	2 cut(s)	334, 418
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	3 cut(s)	39, 530, 930
SspDI	GGCGCC	2 cut(s)	32, 202
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	2 cut(s)	344, 737
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	82, 142, 748
TaiI	ACGT	3 cut(s)	109, 298, 667
TaqI	TCGA	2 cut(s)	427, 779
TasI	AATT	1 cut(s)	486
TatI	WGTACW	3 cut(s)	376, 910, 919
TauI	GCSGC	1 cut(s)	932
TfiI	GAWTC	1 cut(s)	859
TseFI	GTSAC	2 cut(s)	751, 809
TseI	GCWGC	5 cut(s)	224, 284, 353, 497, 926
Tsp45I	GTSAC	2 cut(s)	751, 809
TspDTI	ATGAA	4 cut(s)	186, 648, 931, 967
TspGWI	ACGGA	2 cut(s)	116, 207
XceI	RCATGY	2 cut(s)	334, 418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XspI	CTAG	2 cut(s)	344, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.