Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014283

Physical Location & Seq

Genomic Coordinates Forward (+)

16840081 .. 16842404

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAAACCTTCATCACCAATTTCACTCACTAGTTCTTCAATTGCTAGAAAAGCTCGTTTTTCTCCTTACCTCTTCACACTCTTAGCCTTCATTCTTTTCGTCTCTGTCCTCTATGGTGAAGATTTTATGTGCATCTTTGGACAGCTCGAGCCTAACTTCGTCCTCCCGCCTTCTCGAACACCCGAAAAGAATAAGAAATCGGAGAAGCTTGCGTTTGCTATTGGTAAAACAGAGGAAAGCTGTGACGTTTTCAGCGGGAAATGGGTGAGAGATGAAGTCTCCCGACCACTGTATGAGGAATGGGAGTGTCCGTACATTCAACCTCAGCTTACATGTCAAGAACACGGCCGTCCCGACAAAGACTACCAGTTTTGGCGGTGGCAGCCTAATCACTGCGATCTTCCCTCGTTCAACGCGTCACTGATGCTGGAGACATTAAGAGGGAAGAGGATGATGTATGTAGGAGACTCGTTAAACCGTGGAATGTTTGTATCAATGATTTGTCTTCTTCATCGTCTTATTCCTGAAGATCAGAAATCAATTAAAACCAATGGTTCCCTCACTGTCTTCACTGCCAAGGAGTATAACGCGACGATAGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGACGATGCAATTGTCCATAGAATATCGGATAGGGTTGTGAGAAAAGGATCAATTAACAAACATGGTCGTCACTGGAAAGGAGTCGATATAATCATCTTCAACACTTATCTGTGGTGGATGACTGGATTGAAGATGAACATCTTGCAAGGATCGTTTGATGATAAAGAGAAGAATATCGTAGAGGTTTCGACTGAAGATGCGTACCGGATGGGTATGAAGAGTATGTTGAGATGGGTGAAGAACAACATGGATCGTAAGAAAACTAGGGTCTTCTTCACTAGCATGTCTCCAACGCATGCCAAGGGGATAGATTGGGGAGGTGAACCGGGTCAGAATTGCTATAATCAGACAACACTTATAGAAGATCCAAGCTACTGGGGATCAGATTGTAGGAAAAGCATAATGAAAGTGATTGGAGAAGTGTTTGGAAGATCGAAAACACCGATAACGTTACTGAACATAACGCAAATGTCGAATTACAGGAAAGATGCACATACGTCGATATACAAGAAGCAGTGGAGTCCACTTACAGCGGAGCAGCTGGAGAATCCAACGAGCTATGCGGATTGTGTACATTGGTGCTTGCCTGGCCTTCAAGATACTTGGAATGAGCTTCTCTTTGCTAAACTTTTCTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1990538 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

425

Amino Acids

49.32

Weight (kDa)

8.64

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	79 - 133	1.9e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	134 - 420	2e-90	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40320
fragaria_vesca	FvH4_7g25160 FvH4_7g25160
malus_domestica	MD01G1158300.v1.1 MD07G1227000.v1.1
prunus_persica	Prupe.2G256600_v2.0.a1
pyrus_communis	pycom01g17500 pycom07g20560
rosa_chinensis	RchiOBHm_Chr1g0371061
rosa_laevigata	RLG00000026989
rosa_multiflora	Rmu_sc0001018.1_g000029
rosa_roxburghii	Rroxscaffold_4G00286010 Rroxscaffold_4G00286020
rosa_rugosa	Rorug01G0361200
rosa_samantha	Rh1CG348200 Rh1DG366100
rosa_wichuraiana	Rw1G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	610
AccII	CGCG	2 cut(s)	416, 590
AciI	CCGC	5 cut(s)	167, 255, 376, 1169, 1199
AclI	AACGTT	1 cut(s)	1085
AclWI	GGATC	5 cut(s)	691, 793, 894, 995, 1024
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	2 cut(s)	546, 849
AfaI	GTAC	3 cut(s)	314, 839, 1209
AflIII	ACRYGT	2 cut(s)	332, 414
AgsI	TTSAA	6 cut(s)	39, 320, 412, 736, 766, 1232
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	1222
AluBI	AGCT	9 cut(s)	53, 145, 208, 240, 328, 1008, 1177, 1194, 1249
AluI	AGCT	9 cut(s)	53, 145, 208, 240, 328, 1008, 1177, 1194, 1249
Alw26I	GTCTC	5 cut(s)	106, 283, 425, 459, 927
AlwI	GGATC	5 cut(s)	691, 793, 894, 995, 1024
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	346, 1225
ApeKI	GCWGC	2 cut(s)	382, 1174
ApoI	RAATTY	1 cut(s)	631
AsuC2I	CCSGG	1 cut(s)	963
AsuHPI	GGTGA	5 cut(s)	6, 128, 277, 883, 968
AvaI	CYCGRG	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	610
BbsI	GAAGAC	3 cut(s)	497, 559, 898
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	394, 1186
BccI	CCATC	2 cut(s)	838, 861
BceAI	ACGGC	2 cut(s)	333, 361
BcgI	CGANNNNNNTGC	2 cut(s)	1116, 1150
BciT130I	CCWGG	1 cut(s)	1224
BcnI	CCSGG	1 cut(s)	963
BcoDI	GTCTC	5 cut(s)	106, 283, 425, 459, 927
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	5 cut(s)	30, 45, 623, 900, 915
BisI	GCNGC	2 cut(s)	383, 1175
BlsI	GCNGC	2 cut(s)	384, 1176
Bme1390I	CCNGG	2 cut(s)	963, 1224
BmeT110I	CYCGRG	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	556, 612
BmrFI	CCNGG	2 cut(s)	963, 1224
BmrI	ACTGGG	1 cut(s)	1021
BmsI	GCATC	5 cut(s)	141, 414, 631, 823, 1114
BmuI	ACTGGG	1 cut(s)	1021
BpiI	GAAGAC	3 cut(s)	497, 559, 898
BpmI	CTGGAG	2 cut(s)	449, 1199
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	963
BsaBI	GATNNNNATC	1 cut(s)	773
BsaJI	CCNNGG	3 cut(s)	478, 576, 936
BsaWI	WCCGGW	1 cut(s)	840
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bse1I	ACTGG	4 cut(s)	367, 713, 763, 1016
Bse8I	GATNNNNATC	1 cut(s)	773
BseBI	CCWGG	1 cut(s)	1224
BseDI	CCNNGG	3 cut(s)	478, 576, 936
BseGI	GGATG	3 cut(s)	456, 759, 849
BseJI	GATNNNNATC	1 cut(s)	773
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	4 cut(s)	367, 713, 763, 1016
BseSI	GKGCMC	1 cut(s)	613
BseX3I	CGGCCG	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	394, 1186
Bsh1236I	CGCG	2 cut(s)	416, 590
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	348, 1227
BshNI	GGYRCC	1 cut(s)	610
BsiEI	CGRYCG	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	841, 962
BslFI	GGGAC	1 cut(s)	336
BsmAI	GTCTC	5 cut(s)	106, 283, 425, 459, 927
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	348, 1227
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp1407I	TGTACA	1 cut(s)	1207
Bsp143I	GATC	8 cut(s)	397, 529, 683, 785, 886, 1000, 1016, 1067
BspACI	CCGC	5 cut(s)	167, 255, 376, 1169, 1199
BspANI	GGCC	2 cut(s)	348, 1227
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	2 cut(s)	416, 590
BspLI	GGNNCC	2 cut(s)	556, 612
BspPI	GGATC	5 cut(s)	691, 793, 894, 995, 1024
BspT107I	GGYRCC	1 cut(s)	610
BsrGI	TGTACA	1 cut(s)	1207
BsrI	ACTGG	4 cut(s)	367, 713, 763, 1016
BssECI	CCNNGG	3 cut(s)	478, 576, 936
BssMI	GATC	8 cut(s)	397, 529, 683, 785, 886, 1000, 1016, 1067
BssT1I	CCWWGG	2 cut(s)	576, 936
Bst2UI	CCWGG	1 cut(s)	1224
Bst4CI	ACNGT	4 cut(s)	291, 479, 565, 615
Bst6I	CTCTTC	3 cut(s)	77, 440, 848
BstAUI	TGTACA	1 cut(s)	1207
BstC8I	GCNNGC	3 cut(s)	210, 933, 1220
BstDEI	CTNAG	2 cut(s)	82, 324
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	3 cut(s)	456, 759, 849
BstFNI	CGCG	2 cut(s)	416, 590
BstKTI	GATC	8 cut(s)	400, 532, 686, 788, 889, 1003, 1019, 1070
BstMAI	GTCTC	5 cut(s)	106, 283, 425, 459, 927
BstMBI	GATC	8 cut(s)	397, 529, 683, 785, 886, 1000, 1016, 1067
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 382, 1224
BstNI	CCWGG	1 cut(s)	1224
BstNSI	RCATGY	3 cut(s)	336, 922, 935
BstSCI	CCNGG	2 cut(s)	961, 1222
BstSLI	GKGCMC	1 cut(s)	613
BstUI	CGCG	2 cut(s)	416, 590
BstV1I	GCAGC	2 cut(s)	394, 1186
BstV2I	GAAGAC	3 cut(s)	497, 559, 898
BstX2I	RGATCY	1 cut(s)	1000
BstXI	CCANNNNNNTGG	1 cut(s)	1011
BstYI	RGATCY	1 cut(s)	1000
BstZI	CGGCCG	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	348, 1227
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	3 cut(s)	456, 759, 849
BtsI	GCAGTG	3 cut(s)	391, 570, 1157
BtsIMutI	CAGTG	7 cut(s)	287, 391, 419, 561, 570, 706, 1157
Cac8I	GCNNGC	3 cut(s)	210, 933, 1220
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	3 cut(s)	313, 838, 1208
CviAII	CATG	5 cut(s)	333, 698, 883, 919, 932
CviQI	GTAC	3 cut(s)	313, 838, 1208
DdeI	CTNAG	2 cut(s)	82, 324
DpnI	GATC	8 cut(s)	399, 531, 685, 787, 888, 1002, 1018, 1069
DpnII	GATC	8 cut(s)	397, 529, 683, 785, 886, 1000, 1016, 1067
EaeI	YGGCCR	1 cut(s)	346
EagI	CGGCCG	1 cut(s)	346
Eam1104I	CTCTTC	3 cut(s)	77, 440, 848
EarI	CTCTTC	3 cut(s)	77, 440, 848
EclXI	CGGCCG	1 cut(s)	346
Eco130I	CCWWGG	2 cut(s)	576, 936
Eco52I	CGGCCG	1 cut(s)	346
Eco57I	CTGAAG	2 cut(s)	546, 849
Eco88I	CYCGRG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	1222
EcoT14I	CCWWGG	2 cut(s)	576, 936
ErhI	CCWWGG	2 cut(s)	576, 936
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	5 cut(s)	336, 701, 886, 922, 935
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	5 cut(s)	332, 697, 882, 918, 931
FauI	CCCGC	2 cut(s)	174, 248
Fnu4HI	GCNGC	2 cut(s)	383, 1175
FokI	GGATG	3 cut(s)	463, 766, 856
Fsp4HI	GCNGC	2 cut(s)	383, 1175
FspBI	CTAG	5 cut(s)	30, 45, 623, 900, 915
GluI	GCNGC	2 cut(s)	383, 1175
GsuI	CTGGAG	2 cut(s)	449, 1199
HaeIII	GGCC	2 cut(s)	348, 1227
HapII	CCGG	2 cut(s)	841, 962
HgaI	GACGC	1 cut(s)	405
Hin1II	CATG	5 cut(s)	336, 701, 886, 922, 935
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	5 cut(s)	467, 626, 717, 1156, 1183
HpaII	CCGG	2 cut(s)	841, 962
HphI	GGTGA	5 cut(s)	6, 128, 277, 883, 968
Hpy166II	GTNNAC	3 cut(s)	959, 1160, 1208
Hpy188I	TCNGA	7 cut(s)	202, 534, 637, 664, 969, 984, 1021
Hpy188III	TCNNGA	7 cut(s)	174, 282, 338, 353, 524, 623, 1232
Hpy8I	GTNNAC	3 cut(s)	959, 1160, 1208
Hpy99I	CGWCG	2 cut(s)	595, 1138
HpyAV	CCTTC	4 cut(s)	18, 97, 180, 1238
HpyCH4III	ACNGT	4 cut(s)	291, 479, 565, 615
HpyCH4IV	ACGT	3 cut(s)	246, 1085, 1133
HpyCH4V	TGCA	4 cut(s)	132, 644, 781, 1127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 382, 1224
HpyF3I	CTNAG	2 cut(s)	82, 324
HpySE526I	ACGT	3 cut(s)	246, 1085, 1133
Hsp92II	CATG	5 cut(s)	336, 701, 886, 922, 935
Kzo9I	GATC	8 cut(s)	397, 529, 683, 785, 886, 1000, 1016, 1067
LmnI	GCTCC	1 cut(s)	1171
Lsp1109I	GCAGC	2 cut(s)	394, 1186
LweI	GCATC	5 cut(s)	141, 414, 631, 823, 1114
MaeI	CTAG	5 cut(s)	30, 45, 623, 900, 915
MaeII	ACGT	3 cut(s)	246, 1085, 1133
MaeIII	GTNAC	4 cut(s)	242, 417, 704, 1086
MalI	GATC	8 cut(s)	399, 531, 685, 787, 888, 1002, 1018, 1069
MboI	GATC	8 cut(s)	397, 529, 683, 785, 886, 1000, 1016, 1067
MfeI	CAATTG	2 cut(s)	39, 645
MflI	RGATCY	1 cut(s)	1000
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	8 cut(s)	18, 39, 540, 631, 645, 687, 970, 1111
MluI	ACGCGT	1 cut(s)	414
MlyI	GAGTC	3 cut(s)	461, 726, 1165
MmeI	TCCRAC	2 cut(s)	950, 1211
MseI	TTAA	4 cut(s)	437, 473, 543, 690
MslI	CAYNNNNRTG	1 cut(s)	917
MspA1I	CMGCKG	3 cut(s)	255, 1169, 1177
MspI	CCGG	2 cut(s)	841, 962
MspR9I	CCNGG	2 cut(s)	963, 1224
MunI	CAATTG	2 cut(s)	39, 645
MvaI	CCWGG	1 cut(s)	1224
MvnI	CGCG	2 cut(s)	416, 590
MwoI	GCNNNNNNNGC	3 cut(s)	50, 382, 1224
NciI	CCSGG	1 cut(s)	963
NdeII	GATC	8 cut(s)	397, 529, 683, 785, 886, 1000, 1016, 1067
NlaIII	CATG	5 cut(s)	336, 701, 886, 922, 935
NlaIV	GGNNCC	2 cut(s)	556, 612
NmuCI	GTSAC	3 cut(s)	242, 417, 704
NspI	RCATGY	3 cut(s)	336, 922, 935
PaeI	GCATGC	1 cut(s)	935
PaeR7I	CTCGAG	1 cut(s)	146
PciI	ACATGT	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	4 cut(s)	351, 413, 1076, 1106
PfeI	GAWTC	2 cut(s)	626, 1183
PkrI	GCNGC	2 cut(s)	384, 1176
PleI	GAGTC	3 cut(s)	461, 725, 1164
PpsI	GAGTC	3 cut(s)	461, 725, 1164
PscI	ACATGT	1 cut(s)	332
Psp1406I	AACGTT	1 cut(s)	1085
Psp6I	CCWGG	1 cut(s)	1222
PspGI	CCWGG	1 cut(s)	1222
PspN4I	GGNNCC	2 cut(s)	556, 612
PspXI	VCTCGAGB	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	1000
PvuII	CAGCTG	1 cut(s)	1177
RsaI	GTAC	3 cut(s)	314, 839, 1209
RsaNI	GTAC	3 cut(s)	313, 838, 1208
RseI	CAYNNNNRTG	1 cut(s)	917
SaqAI	TTAA	4 cut(s)	437, 473, 543, 690
SatI	GCNGC	2 cut(s)	383, 1175
Sau3AI	GATC	8 cut(s)	397, 529, 683, 785, 886, 1000, 1016, 1067
SchI	GAGTC	3 cut(s)	461, 726, 1165
ScrFI	CCNGG	2 cut(s)	963, 1224
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	5 cut(s)	141, 414, 631, 823, 1114
Sfr274I	CTCGAG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SpeI	ACTAGT	1 cut(s)	29
SphI	GCATGC	1 cut(s)	935
Sse9I	AATT	8 cut(s)	18, 39, 540, 631, 645, 687, 970, 1111
SsiI	CCGC	5 cut(s)	167, 255, 376, 1169, 1199
SspMI	CTAG	5 cut(s)	30, 45, 623, 900, 915
StyD4I	CCNGG	2 cut(s)	961, 1222
StyI	CCWWGG	2 cut(s)	576, 936
TaaI	ACNGT	4 cut(s)	291, 479, 565, 615
TaiI	ACGT	3 cut(s)	249, 1088, 1136
TaqI	TCGA	8 cut(s)	147, 175, 629, 720, 824, 1070, 1109, 1136
TasI	AATT	8 cut(s)	18, 39, 540, 631, 645, 687, 970, 1111
TatI	WGTACW	1 cut(s)	1207
TfiI	GAWTC	2 cut(s)	626, 1183
Tru1I	TTAA	4 cut(s)	437, 473, 543, 690
Tru9I	TTAA	4 cut(s)	437, 473, 543, 690
TscAI	CASTG	7 cut(s)	294, 398, 426, 568, 577, 713, 1157
TseFI	GTSAC	3 cut(s)	242, 417, 704
TseI	GCWGC	2 cut(s)	382, 1174
Tsp45I	GTSAC	3 cut(s)	242, 417, 704
TspDTI	ATGAA	7 cut(s)	17, 79, 288, 500, 785, 866, 1055
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	7 cut(s)	294, 398, 426, 568, 577, 713, 1157
XapI	RAATTY	1 cut(s)	631
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	3 cut(s)	336, 922, 935
XhoI	CTCGAG	1 cut(s)	146
XspI	CTAG	5 cut(s)	30, 45, 623, 900, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.