Rorug01G0361200

Protein trichome birefringence-like 33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014283
Physical Location & Seq
Reverse (-)
47670608 .. 47671414
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0361200.1

Sequence Viewer

Length: 642 bp
ATGTTTATGGGGTTGATCCGCCAGACAAAGCTTGTGTTAGCGGTGATTTTGGTGCAGCTCGGGTATGCTGGGCTTTCGATAATCTCTGTGTTTGCTCTAAAGAAGGGAATGAGTCCTTACACATTCATCGTGTACCGAATGGCCATTGCCACTATTGTTCTAGCTCCATTTGTATTCATTTTGGAGAGGAATTCAAGACCTACGATGACTTGGTCCATCACTGCAAAGATAATGTTGCTGAGCCTTTTCGACCCTGTGCTTGACCAGAACCTCTACTACATGGGAATGAAGAATTCGAGTGCAACGTTCACTTCTGCAATGTGCAATATGCTGCCTGCTTTTGCATTTTGTCTAGCCTGGATTTTTAGGTTTGAGAAGGTTAGCCTTAAGAAACTGCACAGCATAGCAAAGGTCATGGGGACGATCATCACAGTTGGAGGAGCAATAGTCTTGACTCTAGTTAGAGGTCCTTCATTGTGTCTACCATGGGCCATTGAAGAACAAATTGATCCTCATCAATCTGCGCAATGTTACTCGGGTCAGTCAGACCTCGTGAAAGGAGCTCTATTTATCACAGGAGCTTGTTTCTGCTGGTCTTTAGGGATGGCATTAAAACCCATGGGTACGGGTACCCGCGGGTAA

Protein Analysis

213

Amino Acids

23.4

Weight (kDa)

9.53

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 12 - 143 1.3e-15 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40320
fragaria_vesca FvH4_7g25160 FvH4_7g25160
malus_domestica MD01G1158300.v1.1 MD07G1227000.v1.1
prunus_persica Prupe.2G256600_v2.0.a1
pyrus_communis pycom01g17500 pycom07g20560
rosa_chinensis RchiOBHm_Chr1g0371061
rosa_laevigata RLG00000026989
rosa_multiflora Rmu_sc0001018.1_g000029
rosa_roxburghii Rroxscaffold_4G00286010 Rroxscaffold_4G00286020
rosa_rugosa Rorug01G0361200
rosa_samantha Rh1CG348200 Rh1DG366100
rosa_wichuraiana Rw1G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 525
Acc65I GGTACC 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 629
AccI GTMKAC 1 cut(s) 481
AccII CGCG 1 cut(s) 636
AciI CCGC 4 cut(s) 19, 41, 634, 636
AclI AACGTT 1 cut(s) 305
AclWI GGATC 2 cut(s) 10, 503
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 2 cut(s) 190, 292
AfaI GTAC 3 cut(s) 134, 625, 631
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 2 cut(s) 195, 497
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 5 cut(s) 31, 58, 164, 563, 581
AluI AGCT 5 cut(s) 31, 58, 164, 563, 581
Alw21I GWGCWC 1 cut(s) 565
AlwI GGATC 2 cut(s) 10, 503
Ama87I CYCGRG 2 cut(s) 59, 535
AoxI GGCC 2 cut(s) 141, 489
ApeKI GCWGC 2 cut(s) 55, 331
ApoI RAATTY 2 cut(s) 190, 292
Asp718I GGTACC 1 cut(s) 629
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 3 cut(s) 213, 467, 489
AsuHPI GGTGA 1 cut(s) 55
AvaI CYCGRG 2 cut(s) 59, 535
AvaII GGWCC 2 cut(s) 213, 467
BalI TGGCCA 1 cut(s) 143
BanI GGYRCC 1 cut(s) 629
BanII GRGCYC 1 cut(s) 565
BauI CACGAG 1 cut(s) 551
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 2 cut(s) 67, 318
BccI CCATC 2 cut(s) 224, 598
BciT130I CCWGG 1 cut(s) 358
BfaI CTAG 3 cut(s) 161, 353, 458
BfrI CTTAAG 1 cut(s) 386
BisI GCNGC 2 cut(s) 56, 332
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 2 cut(s) 57, 333
Bme1390I CCNGG 1 cut(s) 358
Bme18I GGWCC 2 cut(s) 213, 467
BmeT110I CYCGRG 2 cut(s) 59, 535
BmgT120I GGNCC 3 cut(s) 213, 467, 489
BmiI GGNNCC 1 cut(s) 631
BmrFI CCNGG 1 cut(s) 358
Bpu1102I GCTNAGC 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 513
BsaJI CCNNGG 3 cut(s) 485, 618, 634
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bse3DI GCAATG 3 cut(s) 144, 324, 533
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 3 cut(s) 485, 618, 634
BseGI GGATG 1 cut(s) 609
BseJI GATNNNNATC 1 cut(s) 513
BseMI GCAATG 3 cut(s) 144, 324, 533
BseMII CTCAG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 2 cut(s) 67, 318
BseYI CCCAGC 1 cut(s) 68
BsgI GTGCAG 2 cut(s) 74, 380
Bsh1236I CGCG 1 cut(s) 636
BshFI GGCC 2 cut(s) 143, 491
BshNI GGYRCC 1 cut(s) 629
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 2 cut(s) 59, 535
BslFI GGGAC 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 2 cut(s) 143, 491
BsoBI CYCGRG 2 cut(s) 59, 535
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 3 cut(s) 15, 423, 508
Bsp1720I GCTNAGC 1 cut(s) 239
Bsp19I CCATGG 2 cut(s) 485, 618
BspACI CCGC 4 cut(s) 19, 41, 634, 636
BspANI GGCC 2 cut(s) 143, 491
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 636
BspLI GGNNCC 1 cut(s) 631
BspPI GGATC 2 cut(s) 10, 503
BspT107I GGYRCC 1 cut(s) 629
BspTI CTTAAG 1 cut(s) 386
BsrDI GCAATG 3 cut(s) 144, 324, 533
BssECI CCNNGG 3 cut(s) 485, 618, 634
BssMI GATC 3 cut(s) 15, 423, 508
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 2 cut(s) 485, 618
Bst2BI CACGAG 1 cut(s) 551
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 433
BstAFI CTTAAG 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 3 cut(s) 485, 618, 634
BstF5I GGATG 1 cut(s) 609
BstFNI CGCG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 3 cut(s) 18, 426, 511
BstMBI GATC 3 cut(s) 15, 423, 508
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 356
BstUI CGCG 1 cut(s) 636
BstV1I GCAGC 2 cut(s) 67, 318
BsuRI GGCC 2 cut(s) 143, 491
BtgI CCRYGG 3 cut(s) 485, 618, 634
BtsCI GGATG 1 cut(s) 609
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 336
CfoI GCGC 1 cut(s) 526
Cfr13I GGNCC 3 cut(s) 213, 467, 489
Cfr42I CCGCGG 1 cut(s) 637
Csp6I GTAC 3 cut(s) 133, 624, 630
CviAII CATG 4 cut(s) 280, 415, 486, 619
CviQI GTAC 3 cut(s) 133, 624, 630
DdeI CTNAG 1 cut(s) 239
DpnI GATC 3 cut(s) 17, 425, 510
DpnII GATC 3 cut(s) 15, 423, 508
EaeI YGGCCR 1 cut(s) 141
EciI GGCGGA 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 563
Eco130I CCWWGG 2 cut(s) 485, 618
Eco24I GRGCYC 1 cut(s) 565
Eco47I GGWCC 2 cut(s) 213, 467
Eco53kI GAGCTC 1 cut(s) 563
Eco88I CYCGRG 2 cut(s) 59, 535
EcoICRI GAGCTC 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 467
EcoRI GAATTC 2 cut(s) 190, 292
EcoRII CCWGG 1 cut(s) 356
EcoT14I CCWWGG 2 cut(s) 485, 618
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 2 cut(s) 485, 618
FaeI CATG 4 cut(s) 283, 418, 489, 622
FaiI YATR 8 cut(s) 8, 66, 281, 329, 404, 416, 487, 620
FaqI GGGAC 1 cut(s) 433
FatI CATG 4 cut(s) 279, 414, 485, 618
FauI CCCGC 1 cut(s) 629
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 56, 332
FokI GGATG 1 cut(s) 616
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 2 cut(s) 56, 332
FspBI CTAG 3 cut(s) 161, 353, 458
FspI TGCGCA 1 cut(s) 525
GlaI GCGC 1 cut(s) 525
GluI GCNGC 2 cut(s) 56, 332
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 143, 491
HhaI GCGC 1 cut(s) 526
Hin1II CATG 4 cut(s) 283, 418, 489, 622
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 2 cut(s) 112, 454
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 3 cut(s) 133, 309, 482
Hpy188I TCNGA 1 cut(s) 547
Hpy188III TCNNGA 3 cut(s) 195, 451, 553
Hpy8I GTNNAC 3 cut(s) 133, 309, 482
HpyAV CCTTC 3 cut(s) 97, 370, 480
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 7 cut(s) 55, 224, 302, 317, 324, 344, 397
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 4 cut(s) 283, 418, 489, 622
HspAI GCGC 1 cut(s) 524
KpnI GGTACC 1 cut(s) 633
KspI CCGCGG 1 cut(s) 637
Kzo9I GATC 3 cut(s) 15, 423, 508
LmnI GCTCC 4 cut(s) 169, 440, 560, 578
LpnPI CCDG 9 cut(s) 35, 54, 267, 278, 343, 348, 370, 561, 577
Lsp1109I GCAGC 2 cut(s) 67, 318
MaeI CTAG 3 cut(s) 161, 353, 458
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 530
MalI GATC 3 cut(s) 17, 425, 510
MboI GATC 3 cut(s) 15, 423, 508
MboII GAAGA 2 cut(s) 301, 509
MhlI GDGCHC 1 cut(s) 565
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 3 cut(s) 190, 292, 504
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 2 cut(s) 121, 448
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 6 cut(s) 180, 281, 431, 458, 522, 560
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 2 cut(s) 387, 611
MslI CAYNNNNRTG 1 cut(s) 284
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 636
MspCI CTTAAG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 358
MvaI CCWGG 1 cut(s) 358
MvnI CGCG 1 cut(s) 636
NcoI CCATGG 2 cut(s) 485, 618
NdeII GATC 3 cut(s) 15, 423, 508
NlaIII CATG 4 cut(s) 283, 418, 489, 622
NlaIV GGNNCC 1 cut(s) 631
NsbI TGCGCA 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 2 cut(s) 57, 333
PleI GAGTC 2 cut(s) 120, 448
PpsI GAGTC 2 cut(s) 120, 448
PpuMI RGGWCCY 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 565
Psp1406I AACGTT 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 356
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 631
PspPI GGNCC 3 cut(s) 213, 467, 489
PspPPI RGGWCCY 1 cut(s) 467
PsrI GAACNNNNNNTAC 2 cut(s) 260, 292
PsyI GACNNNGTC 1 cut(s) 211
RsaI GTAC 3 cut(s) 134, 625, 631
RsaNI GTAC 3 cut(s) 133, 624, 630
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 565
SacII CCGCGG 1 cut(s) 637
SaqAI TTAA 2 cut(s) 387, 611
SatI GCNGC 2 cut(s) 56, 332
Sau3AI GATC 3 cut(s) 15, 423, 508
Sau96I GGNCC 3 cut(s) 213, 467, 489
SchI GAGTC 2 cut(s) 121, 448
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 1 cut(s) 565
Sfr303I CCGCGG 1 cut(s) 637
SgrBI CCGCGG 1 cut(s) 637
SinI GGWCC 2 cut(s) 213, 467
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 3 cut(s) 190, 292, 504
SsiI CCGC 4 cut(s) 19, 41, 634, 636
SspMI CTAG 3 cut(s) 161, 353, 458
SstI GAGCTC 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 2 cut(s) 485, 618
TaaI ACNGT 1 cut(s) 433
TaiI ACGT 1 cut(s) 308
TaqI TCGA 3 cut(s) 77, 249, 296
TasI AATT 3 cut(s) 190, 292, 504
Tru1I TTAA 2 cut(s) 387, 611
Tru9I TTAA 2 cut(s) 387, 611
TscAI CASTG 1 cut(s) 226
TseI GCWGC 2 cut(s) 55, 331
TspDTI ATGAA 4 cut(s) 115, 166, 302, 462
TspRI CASTG 1 cut(s) 226
Tth111I GACNNNGTC 1 cut(s) 211
Vha464I CTTAAG 1 cut(s) 386
VpaK11BI GGWCC 2 cut(s) 213, 467
XapI RAATTY 2 cut(s) 190, 292
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 3 cut(s) 161, 353, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.