Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014283

Physical Location & Seq

Genomic Coordinates Reverse (-)

7190189 .. 7193081

Gene Structure 2893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCTGGAGACTCTACGAGGGAAGCGGATGATGTTTGTGGGAGATTCTCTGAACAGGGGTCAGTATGTTTCTATGATTTGTCTTCTCCACTCCCTCATTCCCGATGAAGCCAAATCCATGGAAACCTTCGACTCAGATTCACGAACTGTTTTCACAGCCAAGGATTACAATGCCACACTTGAGTTCTATTGGGCGCCATTTCTTCTTGAGTCGAACTCGGATAATGCTGTCAACCATAGGATATCGGATAGGCTTGTCAGGAAAGGGTCCATGAATTACCATGGCAAACACTGGAAGGGGGTTGATGTATTGGTGTTCAATACCTATCTGTGGTGGATGACCGGCCAGAAATTTAAGATCTTGCAAGGGTCTTTCGAAGATGAGGTGAAAGATATTGTGGAGGTGCCAACCGCGGAGGCTTATCGTATGGCAATGAAAAGTATGCTAAGATGGGTGCGGAGGAACATGGACCGCAATAAGACAAGGGTCTTTTTCACTAGCATGTCACCTTCCCATGGAAAGAGTATTGACTGGGGAGGTGAACCAAACGAGAACTGTTACAATCAAACTAGTTTGATCGAAGATCCGAACTATTGGGGTTCAGATTCCCGGAAAAATATAATGGAGGTAATAGGAGAAGAATTCAGGAAGTCAAAGGTGCCCATTTCATTCCTCAACATCACCCAGCTCTCGAGTTATCGCAAAGATGCACACACGTCAATCTACAAGAAGCAGTGGAGTCCATTGACTCCAGAGCAATTAGCAAACCCTGTCAGCTATGCAGATTGTGTTCATTGGTGTTTGCCTGGTCTGCAGGATACTTGGAATGAGCTTCTCTTTGCCAAAATGTTCTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1990538 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

286

Amino Acids

33.4

Weight (kDa)

7.67

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 281	2.5e-86	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40320
fragaria_vesca	FvH4_7g25160 FvH4_7g25160
malus_domestica	MD01G1158300.v1.1 MD07G1227000.v1.1
prunus_persica	Prupe.2G256600_v2.0.a1
pyrus_communis	pycom01g17500 pycom07g20560
rosa_chinensis	RchiOBHm_Chr1g0371061
rosa_laevigata	RLG00000026989
rosa_multiflora	Rmu_sc0001018.1_g000029
rosa_roxburghii	Rroxscaffold_4G00286010 Rroxscaffold_4G00286020
rosa_rugosa	Rorug01G0361200
rosa_samantha	Rh1CG348200 Rh1DG366100
rosa_wichuraiana	Rw1G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	193, 403, 658
AccII	CGCG	1 cut(s)	413
AciI	CCGC	5 cut(s)	25, 411, 413, 457, 472
AclWI	GGATC	1 cut(s)	578
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	2 cut(s)	350, 641
AcyI	GRCGYC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	330, 515
AflIII	ACRYGT	1 cut(s)	714
AgsI	TTSAA	1 cut(s)	319
AhlI	ACTAGT	1 cut(s)	569
AjiI	CACGTC	1 cut(s)	717
AjnI	CCWGG	1 cut(s)	805
AluBI	AGCT	3 cut(s)	688, 777, 832
AluI	AGCT	3 cut(s)	688, 777, 832
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	691
AoxI	GGCC	1 cut(s)	343
ApoI	RAATTY	2 cut(s)	350, 641
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	267, 469
AsuC2I	CCSGG	1 cut(s)	610
AsuHPI	GGTGA	4 cut(s)	397, 498, 551, 673
AsuII	TTCGAA	1 cut(s)	375
AvaI	CYCGRG	1 cut(s)	691
AvaII	GGWCC	2 cut(s)	267, 469
BaeGI	GKGCMC	1 cut(s)	663
BanI	GGYRCC	3 cut(s)	193, 403, 658
BbsI	GAAGAC	1 cut(s)	74
BccI	CCATC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	807
BciVI	GTATCC	1 cut(s)	811
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	1 cut(s)	2
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	2 cut(s)	498, 570
BfmI	CTRYAG	1 cut(s)	812
BfoI	RGCGCY	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	811
BglII	AGATCT	1 cut(s)	357
Bme1390I	CCNGG	2 cut(s)	610, 807
Bme18I	GGWCC	2 cut(s)	267, 469
BmeT110I	CYCGRG	1 cut(s)	691
BmgBI	CACGTC	1 cut(s)	717
BmgT120I	GGNCC	2 cut(s)	267, 469
BmiI	GGNNCC	4 cut(s)	195, 268, 405, 660
BmrFI	CCNGG	2 cut(s)	610, 807
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	697
BmuI	ACTGGG	1 cut(s)	541
BoxI	GACNNNNGTC	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	2 cut(s)	26, 735
Bpu14I	TTCGAA	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	200, 227
BpuMI	CCSGG	1 cut(s)	610
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	5 cut(s)	117, 159, 280, 411, 514
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 515
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	296, 536
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	5 cut(s)	117, 159, 280, 411, 514
BseGI	GGATG	2 cut(s)	33, 342
BseLI	CCNNNNNNNGG	2 cut(s)	330, 515
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	296, 536
BseSI	GKGCMC	1 cut(s)	663
BseYI	CCCAGC	1 cut(s)	684
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	345
BshNI	GGYRCC	3 cut(s)	193, 403, 658
BsiHKCI	CYCGRG	1 cut(s)	691
BsiSI	CCGG	2 cut(s)	342, 610
BslI	CCNNNNNNNGG	2 cut(s)	330, 515
BsmAI	GTCTC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	691
Bsp119I	TTCGAA	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	3 cut(s)	357, 576, 583
Bsp19I	CCATGG	3 cut(s)	117, 280, 514
BspACI	CCGC	5 cut(s)	25, 411, 413, 457, 472
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	4 cut(s)	195, 268, 405, 660
BspMAI	CTGCAG	1 cut(s)	816
BspPI	GGATC	1 cut(s)	578
BspT104I	TTCGAA	1 cut(s)	375
BspT107I	GGYRCC	3 cut(s)	193, 403, 658
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	296, 536
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	5 cut(s)	117, 159, 280, 411, 514
BssMI	GATC	3 cut(s)	357, 576, 583
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	4 cut(s)	117, 159, 280, 514
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	2 cut(s)	148, 557
BstACI	GRCGYC	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	133, 446
BstDSI	CCRYGG	4 cut(s)	117, 280, 411, 514
BstF5I	GGATG	2 cut(s)	33, 342
BstFNI	CGCG	1 cut(s)	413
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	360, 579, 586
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	3 cut(s)	357, 576, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	811
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	1 cut(s)	505
BstPAI	GACNNNNGTC	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	608, 805
BstSFI	CTRYAG	1 cut(s)	812
BstSLI	GKGCMC	1 cut(s)	663
BstUI	CGCG	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	2 cut(s)	357, 583
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	2 cut(s)	357, 583
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	1 cut(s)	345
BtgI	CCRYGG	4 cut(s)	117, 280, 411, 514
BtrI	CACGTC	1 cut(s)	717
BtsCI	GGATG	2 cut(s)	33, 342
BtsI	GCAGTG	1 cut(s)	740
BtsIMutI	CAGTG	2 cut(s)	289, 740
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	267, 469
Cfr42I	CCGCGG	1 cut(s)	414
CviAII	CATG	6 cut(s)	118, 271, 281, 466, 502, 515
CviJI	RGCY	8 cut(s)	110, 158, 253, 345, 419, 688, 777, 832
CviKI_1	RGCY	8 cut(s)	110, 158, 253, 345, 419, 688, 777, 832
DdeI	CTNAG	2 cut(s)	133, 446
DinI	GGCGCC	1 cut(s)	195
DpnI	GATC	3 cut(s)	359, 578, 585
DpnII	GATC	3 cut(s)	357, 576, 583
EaeI	YGGCCR	1 cut(s)	343
Eco130I	CCWWGG	4 cut(s)	117, 159, 280, 514
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	267, 469
Eco88I	CYCGRG	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	805
EcoRV	GATATC	1 cut(s)	243
EcoT14I	CCWWGG	4 cut(s)	117, 159, 280, 514
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
ErhI	CCWWGG	4 cut(s)	117, 159, 280, 514
FaeI	CATG	6 cut(s)	121, 274, 284, 469, 505, 518
FatI	CATG	6 cut(s)	117, 270, 280, 465, 501, 514
FokI	GGATG	2 cut(s)	40, 349
FspBI	CTAG	2 cut(s)	498, 570
GlaI	GCGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	688
GsuI	CTGGAG	2 cut(s)	26, 735
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	2 cut(s)	342, 610
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	6 cut(s)	121, 274, 284, 469, 505, 518
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	8 cut(s)	10, 44, 131, 137, 209, 605, 739, 748
HpaII	CCGG	2 cut(s)	342, 610
HphI	GGTGA	4 cut(s)	397, 498, 551, 673
Hpy166II	GTNNAC	2 cut(s)	232, 542
Hpy188I	TCNGA	6 cut(s)	51, 136, 220, 247, 588, 604
Hpy188III	TCNNGA	7 cut(s)	101, 141, 206, 259, 646, 691, 752
Hpy8I	GTNNAC	2 cut(s)	232, 542
HpyAV	CCTTC	3 cut(s)	136, 289, 519
HpyCH4III	ACNGT	2 cut(s)	148, 557
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	4 cut(s)	364, 710, 782, 814
HpyF10VI	GCNNNNNNNGC	1 cut(s)	811
HpyF3I	CTNAG	2 cut(s)	133, 446
HpySE526I	ACGT	1 cut(s)	716
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	6 cut(s)	121, 274, 284, 469, 505, 518
HspAI	GCGC	1 cut(s)	194
KasI	GGCGCC	1 cut(s)	193
KspI	CCGCGG	1 cut(s)	414
Kzo9I	GATC	3 cut(s)	357, 576, 583
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	2 cut(s)	498, 570
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	2 cut(s)	504, 557
MalI	GATC	3 cut(s)	359, 578, 585
MboI	GATC	3 cut(s)	357, 576, 583
MboII	GAAGA	5 cut(s)	74, 194, 389, 593, 650
MflI	RGATCY	2 cut(s)	357, 583
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	4 cut(s)	274, 350, 641, 758
Mly113I	GGCGCC	1 cut(s)	194
MlyI	GAGTC	5 cut(s)	4, 125, 218, 742, 748
MnlI	CCTC	9 cut(s)	11, 104, 376, 394, 409, 453, 530, 619, 683
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	2 cut(s)	342, 610
MspR9I	CCNGG	2 cut(s)	610, 807
MvaI	CCWGG	1 cut(s)	807
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	811
NarI	GGCGCC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	610
NcoI	CCATGG	3 cut(s)	117, 280, 514
NdeII	GATC	3 cut(s)	357, 576, 583
NlaIII	CATG	6 cut(s)	121, 274, 284, 469, 505, 518
NlaIV	GGNNCC	4 cut(s)	195, 268, 405, 660
NmuCI	GTSAC	1 cut(s)	504
NspI	RCATGY	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	375
PaeR7I	CTCGAG	1 cut(s)	691
PfeI	GAWTC	3 cut(s)	44, 137, 605
PfoI	TCCNGGA	1 cut(s)	608
PleI	GAGTC	5 cut(s)	4, 125, 217, 742, 747
PluTI	GGCGCC	1 cut(s)	197
PpsI	GAGTC	5 cut(s)	4, 125, 217, 742, 747
PshAI	GACNNNNGTC	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	805
PspFI	CCCAGC	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	4 cut(s)	195, 268, 405, 660
PspPI	GGNCC	2 cut(s)	267, 469
PstI	CTGCAG	1 cut(s)	816
PsuI	RGATCY	2 cut(s)	357, 583
RseI	CAYNNNNRTG	1 cut(s)	500
SacII	CCGCGG	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	357, 576, 583
Sau96I	GGNCC	2 cut(s)	267, 469
SchI	GAGTC	5 cut(s)	4, 125, 218, 742, 748
ScrFI	CCNGG	2 cut(s)	610, 807
SduI	GDGCHC	1 cut(s)	663
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	812
SfoI	GGCGCC	1 cut(s)	195
Sfr274I	CTCGAG	1 cut(s)	691
Sfr303I	CCGCGG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	375
SgrBI	CCGCGG	1 cut(s)	414
SinI	GGWCC	2 cut(s)	267, 469
SlaI	CTCGAG	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	3 cut(s)	179, 206, 691
SmoI	CTYRAG	3 cut(s)	179, 206, 691
SpeI	ACTAGT	1 cut(s)	569
Sse9I	AATT	4 cut(s)	274, 350, 641, 758
SsiI	CCGC	5 cut(s)	25, 411, 413, 457, 472
SspDI	GGCGCC	1 cut(s)	193
SspMI	CTAG	2 cut(s)	498, 570
StyD4I	CCNGG	2 cut(s)	608, 805
StyI	CCWWGG	4 cut(s)	117, 159, 280, 514
TaaI	ACNGT	2 cut(s)	148, 557
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	5 cut(s)	129, 212, 375, 579, 692
TasI	AATT	4 cut(s)	274, 350, 641, 758
TfiI	GAWTC	3 cut(s)	44, 137, 605
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	296, 740
TseFI	GTSAC	1 cut(s)	504
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	5 cut(s)	120, 287, 449, 657, 782
TspRI	CASTG	2 cut(s)	296, 740
VpaK11BI	GGWCC	2 cut(s)	267, 469
XapI	RAATTY	2 cut(s)	350, 641
XceI	RCATGY	1 cut(s)	505
XhoI	CTCGAG	1 cut(s)	691
XspI	CTAG	2 cut(s)	498, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.