Prupe.2G256600_v2.0.a1

Protein trichome birefringence-like 33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014283
Physical Location & Seq
Forward (+)
26846240 .. 26848823
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G256600.1

Sequence Viewer

Length: 1290 bp
ATGAGAATAATGAAGCCACCGCCATTCTCTTCCCCTTCCTCCTCTGTTTTTCGCAAGGCCCGCCTCTCCCCCTACCTCTTCACCTTGCTCGCTTTCATCCTCTTCGTCGCCGTCCTCTACGGTGAGGACCTCATGTGCATCTTCGGCCAGCAGCTGCAACTCAGCCCCAACTCGGACCCACTCGTCATCAGAACCGGGAAGAAGAGGGAGAAGCTGCCGTTCGCCATAGGTAAGAGCGAGGAAGGCTGCGACATATTCAGTGGGAGGTGGGTTTGGGACGAGTCGAATCGGCCGCTTTACGAGGAATCGGAGTGTCCGTACATTCAGCCTCAGTTGACTTGCCAAGAACACGGACGACCTGACAAGGATTATCAGAAATGGCGATGGCAGCCGCACGGCTGTGATCTTCCCAGCTTCAACGCAACATTGATGCTCGAGACACTACGCGGGAAACGGATGATGTTTGTTGGCGATTCTCTGAACCGGGGTCAGTATGTTTCCATGATTTGTCTTCTCCATTCGCTCATCCCCGAGGATGCCAAATCTATGGAAACCTTTGACTCAGACTCACGAACCGTTTTCACTGCAAAGGAGTACAATGCCACAATTGAGTTCTACTGGGCGCCATTTCTTCTCGAGTCAAACTCCGATAATGCTGTCGTCCATAGGATATCTGAGAGGCTTGTCAGGAAAGGGTCCATCACTAAGCATGGCAAGCATTGGAAGGGCGTGGATGTCTTGGTGTTTAACACCTATCTGTGGTGGATGACTGGCTTGAAGTTTAAGATCTTGCAAGGTTCCTTCGATGATGAGGTGAAAGATATCGTGGAGGTACCAACAACAGAGGCTTATCGCATGGCGATGAAGACTATGTTGAGATGGGTGCGGAGGAACATGAACCCCAAGAAGACAAGGGTCTTTTTCACTAGCATGTCGCCTTCTCATGGAAAGAGTGTAGATTGGGGAGGTGAATCAGGAGGTAACTGTTACAATCAAACTACTCCGATTGAAGATCCTAACTATTGGGGTTCAGATTCCCGGAAAAATATAATGGAGGTGATAGGAGACGTGTTCGGTAAATCAAAGGTGCCCATTACATTTCTCAACATCACCCAACTCTCAAGCTATCGCAAAGATGCACACACAGCAATCTACAAGAAGCAGTGGAATCCACTGACTCCAGAGCAATTAGCAAACCCTGTTAGCTATGCAGATTGTGTACATTGGTGTTTGCCTGGCCTTCAGGATACTTGGAATGAGCTTCTATTTGCCAAGCTTTTCTACCCTTGA

Protein Analysis

430

Amino Acids

49.55

Weight (kDa)

8.57

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40320
fragaria_vesca FvH4_7g25160 FvH4_7g25160
malus_domestica MD01G1158300.v1.1 MD07G1227000.v1.1
prunus_persica Prupe.2G256600_v2.0.a1
pyrus_communis pycom01g17500 pycom07g20560
rosa_chinensis RchiOBHm_Chr1g0371061
rosa_laevigata RLG00000026989
rosa_multiflora Rmu_sc0001018.1_g000029
rosa_roxburghii Rroxscaffold_4G00286010 Rroxscaffold_4G00286020
rosa_rugosa Rorug01G0361200
rosa_samantha Rh1CG348200 Rh1DG366100
rosa_wichuraiana Rw1G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
Acc65I GGTACC 1 cut(s) 832
AccB1I GGYRCC 3 cut(s) 622, 832, 1087
AccII CGCG 1 cut(s) 447
AciI CCGC 6 cut(s) 20, 61, 293, 392, 447, 886
AclWI GGATC 1 cut(s) 1007
AcoI YGGCCR 2 cut(s) 145, 290
AcuI CTGAAG 1 cut(s) 1226
AcyI GRCGYC 1 cut(s) 623
AfaI GTAC 4 cut(s) 320, 596, 834, 1221
AfiI CCNNNNNNNGG 3 cut(s) 172, 759, 944
AflIII ACRYGT 1 cut(s) 1068
AgsI TTSAA 3 cut(s) 418, 778, 1010
AjiI CACGTC 1 cut(s) 1069
AjnI CCWGG 1 cut(s) 1234
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 7 cut(s) 154, 214, 414, 1125, 1206, 1261, 1276
AluI AGCT 7 cut(s) 154, 214, 414, 1125, 1206, 1261, 1276
Alw26I GTCTC 2 cut(s) 431, 1059
AlwI GGATC 1 cut(s) 1007
AlwNI CAGNNNCTG 1 cut(s) 154
Ama87I CYCGRG 3 cut(s) 434, 530, 635
AoxI GGCC 4 cut(s) 57, 145, 290, 1237
ApeKI GCWGC 5 cut(s) 151, 154, 214, 246, 388
Asp718I GGTACC 1 cut(s) 832
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 4 cut(s) 58, 127, 175, 696
AsuC2I CCSGG 3 cut(s) 196, 485, 1039
AsuHPI GGTGA 6 cut(s) 73, 134, 826, 980, 1069, 1102
AvaI CYCGRG 3 cut(s) 434, 530, 635
AvaII GGWCC 3 cut(s) 127, 175, 696
BaeGI GKGCMC 1 cut(s) 1092
BanI GGYRCC 3 cut(s) 622, 832, 1087
BbsI GAAGAC 3 cut(s) 503, 872, 914
BbvI GCAGC 5 cut(s) 141, 163, 201, 233, 400
BccI CCATC 3 cut(s) 378, 707, 873
BceAI ACGGC 3 cut(s) 95, 202, 412
BciT130I CCWGG 1 cut(s) 1236
BciVI GTATCC 1 cut(s) 1240
BcnI CCSGG 3 cut(s) 196, 485, 1039
BcoDI GTCTC 2 cut(s) 431, 1059
BfaI CTAG 1 cut(s) 927
BfoI RGCGCY 1 cut(s) 626
BfuI GTATCC 1 cut(s) 1240
BglII AGATCT 1 cut(s) 786
BisI GCNGC 7 cut(s) 152, 155, 215, 247, 293, 389, 392
BlsI GCNGC 7 cut(s) 153, 156, 216, 248, 294, 390, 393
Bme1390I CCNGG 4 cut(s) 196, 485, 1039, 1236
Bme18I GGWCC 3 cut(s) 127, 175, 696
BmeT110I CYCGRG 3 cut(s) 434, 530, 635
BmgBI CACGTC 1 cut(s) 1069
BmgT120I GGNCC 4 cut(s) 58, 127, 175, 696
BmiI GGNNCC 6 cut(s) 177, 624, 697, 799, 834, 1089
BmrFI CCNGG 4 cut(s) 196, 485, 1039, 1236
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 4 cut(s) 147, 420, 526, 1126
BmuI ACTGGG 1 cut(s) 628
BoxI GACNNNNGTC 1 cut(s) 914
BpiI GAAGAC 3 cut(s) 503, 872, 914
BplI GAGNNNNNCTC 2 cut(s) 629, 661
BpmI CTGGAG 1 cut(s) 1164
BpuEI CTTGAG 1 cut(s) 1105
BpuMI CCSGG 3 cut(s) 196, 485, 1039
BsaHI GRCGYC 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 484, 531
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 759, 944
Bse1I ACTGG 2 cut(s) 623, 775
BseBI CCWGG 1 cut(s) 1236
BseDI CCNNGG 2 cut(s) 484, 531
BseGI GGATG 6 cut(s) 96, 462, 525, 541, 739, 771
BseLI CCNNNNNNNGG 3 cut(s) 172, 759, 944
BseMII CTCAG 4 cut(s) 175, 344, 576, 666
BseNI ACTGG 2 cut(s) 623, 775
BseRI GAGGAG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 1092
BseX3I CGGCCG 1 cut(s) 290
BseXI GCAGC 5 cut(s) 141, 163, 201, 233, 400
BseYI CCCAGC 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 293
BshFI GGCC 4 cut(s) 59, 147, 292, 1239
BshNI GGYRCC 3 cut(s) 622, 832, 1087
BsiEI CGRYCG 1 cut(s) 293
BsiHKCI CYCGRG 3 cut(s) 434, 530, 635
BsiSI CCGG 3 cut(s) 195, 484, 1039
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 3 cut(s) 172, 759, 944
BsmAI GTCTC 2 cut(s) 431, 1059
BsmBI CGTCTC 1 cut(s) 1059
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 4 cut(s) 59, 147, 292, 1239
BsoBI CYCGRG 3 cut(s) 434, 530, 635
Bsp1286I GDGCHC 1 cut(s) 1092
Bsp1407I TGTACA 1 cut(s) 1219
Bsp143I GATC 3 cut(s) 403, 786, 1012
BspACI CCGC 6 cut(s) 20, 61, 293, 392, 447, 886
BspANI GGCC 4 cut(s) 59, 147, 292, 1239
BspCNI CTCAG 4 cut(s) 174, 343, 575, 667
BspFNI CGCG 1 cut(s) 447
BspLI GGNNCC 6 cut(s) 177, 624, 697, 799, 834, 1089
BspPI GGATC 1 cut(s) 1007
BspT107I GGYRCC 3 cut(s) 622, 832, 1087
BsrGI TGTACA 1 cut(s) 1219
BsrI ACTGG 2 cut(s) 623, 775
BssECI CCNNGG 2 cut(s) 484, 531
BssMI GATC 3 cut(s) 403, 786, 1012
BssNI GRCGYC 1 cut(s) 623
Bst2UI CCWGG 1 cut(s) 1236
Bst4CI ACNGT 3 cut(s) 122, 577, 986
Bst6I CTCTTC 4 cut(s) 34, 83, 107, 197
BstACI GRCGYC 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 1219
BstC8I GCNNGC 4 cut(s) 61, 90, 149, 716
BstDEI CTNAG 5 cut(s) 161, 330, 562, 675, 705
BstF5I GGATG 6 cut(s) 96, 462, 525, 541, 739, 771
BstFNI CGCG 1 cut(s) 447
BstH2I RGCGCY 1 cut(s) 626
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 3 cut(s) 406, 789, 1015
BstMAI GTCTC 2 cut(s) 431, 1059
BstMBI GATC 3 cut(s) 403, 786, 1012
BstMCI CGRYCG 1 cut(s) 293
BstMWI GCNNNNNNNGC 6 cut(s) 60, 144, 243, 388, 715, 1145
BstNI CCWGG 1 cut(s) 1236
BstNSI RCATGY 1 cut(s) 934
BstPAI GACNNNNGTC 1 cut(s) 914
BstSCI CCNGG 4 cut(s) 194, 483, 1037, 1234
BstSLI GKGCMC 1 cut(s) 1092
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 5 cut(s) 141, 163, 201, 233, 400
BstV2I GAAGAC 3 cut(s) 503, 872, 914
BstX2I RGATCY 2 cut(s) 786, 1012
BstXI CCANNNNNNTGG 1 cut(s) 547
BstYI RGATCY 2 cut(s) 786, 1012
BstZI CGGCCG 1 cut(s) 290
BsuI GTATCC 1 cut(s) 1240
BsuRI GGCC 4 cut(s) 59, 147, 292, 1239
BtgZI GCGATG 2 cut(s) 397, 875
BtrI CACGTC 1 cut(s) 1069
BtsCI GGATG 6 cut(s) 96, 462, 525, 541, 739, 771
BtsI GCAGTG 2 cut(s) 582, 1169
BtsIMutI CAGTG 4 cut(s) 265, 582, 1169, 1172
Cac8I GCNNGC 4 cut(s) 61, 90, 149, 716
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 625
Cfr13I GGNCC 4 cut(s) 58, 127, 175, 696
Csp6I GTAC 4 cut(s) 319, 595, 833, 1220
CviAII CATG 7 cut(s) 133, 502, 710, 856, 895, 931, 944
CviQI GTAC 4 cut(s) 319, 595, 833, 1220
DdeI CTNAG 5 cut(s) 161, 330, 562, 675, 705
DinI GGCGCC 1 cut(s) 624
DpnI GATC 3 cut(s) 405, 788, 1014
DpnII GATC 3 cut(s) 403, 786, 1012
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 2 cut(s) 145, 290
EagI CGGCCG 1 cut(s) 290
Eam1104I CTCTTC 4 cut(s) 34, 83, 107, 197
EarI CTCTTC 4 cut(s) 34, 83, 107, 197
EclXI CGGCCG 1 cut(s) 290
Eco32I GATATC 2 cut(s) 672, 823
Eco47I GGWCC 3 cut(s) 127, 175, 696
Eco52I CGGCCG 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 1226
Eco88I CYCGRG 3 cut(s) 434, 530, 635
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 1234
EcoRV GATATC 2 cut(s) 672, 823
EgeI GGCGCC 1 cut(s) 624
EheI GGCGCC 1 cut(s) 624
Esp3I CGTCTC 1 cut(s) 1059
FaeI CATG 7 cut(s) 136, 505, 713, 859, 898, 934, 947
FaqI GGGAC 1 cut(s) 290
FatI CATG 7 cut(s) 132, 501, 709, 855, 894, 930, 943
FauI CCCGC 2 cut(s) 68, 440
Fnu4HI GCNGC 7 cut(s) 152, 155, 215, 247, 293, 389, 392
FokI GGATG 6 cut(s) 83, 469, 512, 548, 746, 778
Fsp4HI GCNGC 7 cut(s) 152, 155, 215, 247, 293, 389, 392
FspBI CTAG 1 cut(s) 927
GlaI GCGC 1 cut(s) 624
GluI GCNGC 7 cut(s) 152, 155, 215, 247, 293, 389, 392
GsaI CCCAGC 1 cut(s) 414
GsuI CTGGAG 1 cut(s) 1164
HaeII RGCGCY 1 cut(s) 626
HaeIII GGCC 4 cut(s) 59, 147, 292, 1239
HapII CCGG 3 cut(s) 195, 484, 1039
HhaI GCGC 1 cut(s) 625
Hin1I GRCGYC 1 cut(s) 623
Hin1II CATG 7 cut(s) 136, 505, 713, 859, 898, 934, 947
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 1274
HpaII CCGG 3 cut(s) 195, 484, 1039
HphI GGTGA 6 cut(s) 73, 134, 826, 980, 1069, 1102
Hpy166II GTNNAC 2 cut(s) 336, 1220
Hpy188III TCNNGA 7 cut(s) 436, 570, 635, 688, 975, 1181, 1244
Hpy8I GTNNAC 2 cut(s) 336, 1220
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 6 cut(s) 45, 236, 718, 811, 948, 1250
HpyCH4III ACNGT 3 cut(s) 122, 577, 986
HpyCH4IV ACGT 1 cut(s) 1068
HpyCH4V TGCA 6 cut(s) 138, 157, 587, 793, 1139, 1211
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 144, 243, 388, 715, 1145
HpyF3I CTNAG 5 cut(s) 161, 330, 562, 675, 705
HpySE526I ACGT 1 cut(s) 1068
Hsp92I GRCGYC 1 cut(s) 623
Hsp92II CATG 7 cut(s) 136, 505, 713, 859, 898, 934, 947
HspAI GCGC 1 cut(s) 623
KasI GGCGCC 1 cut(s) 622
KpnI GGTACC 1 cut(s) 836
Kzo9I GATC 3 cut(s) 403, 786, 1012
Lsp1109I GCAGC 5 cut(s) 141, 163, 201, 233, 400
LweI GCATC 4 cut(s) 147, 420, 526, 1126
MaeI CTAG 1 cut(s) 927
MaeII ACGT 1 cut(s) 1068
MaeIII GTNAC 2 cut(s) 980, 986
MalI GATC 3 cut(s) 405, 788, 1014
MboI GATC 3 cut(s) 403, 786, 1012
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 2 cut(s) 786, 1012
MhlI GDGCHC 1 cut(s) 1092
MluCI AATT 2 cut(s) 606, 1187
Mly113I GGCGCC 1 cut(s) 623
MlyI GAGTC 5 cut(s) 290, 554, 560, 647, 1171
MseI TTAA 2 cut(s) 747, 783
MslI CAYNNNNRTG 3 cut(s) 399, 860, 929
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 3 cut(s) 195, 484, 1039
MspR9I CCNGG 4 cut(s) 196, 485, 1039, 1236
MunI CAATTG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 1236
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 6 cut(s) 60, 144, 243, 388, 715, 1145
NarI GGCGCC 1 cut(s) 623
NciI CCSGG 3 cut(s) 196, 485, 1039
NdeII GATC 3 cut(s) 403, 786, 1012
NlaIII CATG 7 cut(s) 136, 505, 713, 859, 898, 934, 947
NlaIV GGNNCC 6 cut(s) 177, 624, 697, 799, 834, 1089
NspI RCATGY 1 cut(s) 934
OliI CACNNNNGTG 1 cut(s) 399
PaeR7I CTCGAG 2 cut(s) 434, 635
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PfeI GAWTC 6 cut(s) 286, 305, 473, 971, 1034, 1168
PfoI TCCNGGA 1 cut(s) 1037
PkrI GCNGC 7 cut(s) 153, 156, 216, 248, 294, 390, 393
PleI GAGTC 5 cut(s) 289, 554, 560, 646, 1171
PluTI GGCGCC 1 cut(s) 626
PpsI GAGTC 5 cut(s) 289, 554, 560, 646, 1171
PpuMI RGGWCCY 1 cut(s) 127
PshAI GACNNNNGTC 1 cut(s) 914
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 1234
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 1 cut(s) 1234
PspN4I GGNNCC 6 cut(s) 177, 624, 697, 799, 834, 1089
PspPI GGNCC 4 cut(s) 58, 127, 175, 696
PspPPI RGGWCCY 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 2 cut(s) 786, 1012
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 4 cut(s) 320, 596, 834, 1221
RsaNI GTAC 4 cut(s) 319, 595, 833, 1220
RseI CAYNNNNRTG 3 cut(s) 399, 860, 929
SaqAI TTAA 2 cut(s) 747, 783
SatI GCNGC 7 cut(s) 152, 155, 215, 247, 293, 389, 392
Sau3AI GATC 3 cut(s) 403, 786, 1012
Sau96I GGNCC 4 cut(s) 58, 127, 175, 696
SchI GAGTC 5 cut(s) 290, 554, 560, 647, 1171
ScrFI CCNGG 4 cut(s) 196, 485, 1039, 1236
SduI GDGCHC 1 cut(s) 1092
SfaNI GCATC 4 cut(s) 147, 420, 526, 1126
SfoI GGCGCC 1 cut(s) 624
Sfr274I CTCGAG 2 cut(s) 434, 635
SinI GGWCC 3 cut(s) 127, 175, 696
SlaI CTCGAG 2 cut(s) 434, 635
SmiMI CAYNNNNRTG 3 cut(s) 399, 860, 929
SmlI CTYRAG 3 cut(s) 434, 635, 1120
SmoI CTYRAG 3 cut(s) 434, 635, 1120
Sse9I AATT 2 cut(s) 606, 1187
SsiI CCGC 6 cut(s) 20, 61, 293, 392, 447, 886
SspDI GGCGCC 1 cut(s) 622
SspMI CTAG 1 cut(s) 927
StyD4I CCNGG 4 cut(s) 194, 483, 1037, 1234
TaaI ACNGT 3 cut(s) 122, 577, 986
TaiI ACGT 1 cut(s) 1071
TaqI TCGA 4 cut(s) 284, 435, 636, 804
TasI AATT 2 cut(s) 606, 1187
TatI WGTACW 2 cut(s) 594, 1219
TauI GCSGC 2 cut(s) 295, 394
TfiI GAWTC 6 cut(s) 286, 305, 473, 971, 1034, 1168
Tru1I TTAA 2 cut(s) 747, 783
Tru9I TTAA 2 cut(s) 747, 783
TscAI CASTG 4 cut(s) 265, 589, 1169, 1179
TseI GCWGC 5 cut(s) 151, 154, 214, 246, 388
TspDTI ATGAA 4 cut(s) 26, 85, 878, 911
TspGWI ACGGA 3 cut(s) 306, 366, 469
TspRI CASTG 4 cut(s) 265, 589, 1169, 1179
VpaK11BI GGWCC 3 cut(s) 127, 175, 696
XceI RCATGY 1 cut(s) 934
XhoI CTCGAG 2 cut(s) 434, 635
XspI CTAG 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.