MD01G1158300.v1.1

Protein trichome birefringence-like 33

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
26508655 .. 26512065
3411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1158300.v1.1.491

Sequence Viewer

Length: 1269 bp
ATGAAGCCACCGCCGTACTCCTCCTCCGCCGCCGTCTTCCGCAAGGCTAGACTCTCTCCCTACCTCTTCACCCTCCTCTCCTTCGTCCTCTTCGTCTCCGTCCTCTACGGCGCGGACCTCACCTGCATTTTCGGCCACCGTCAACTCACCACCAGCTCCGACCCACTCGTTATCAAAACCGTTGAGGAGAAGCTGCCGTTCGCCGTCGGCAAGACCGACGAAGGGTGCGACGTGTTCAGCGGGAGGTGGGTTTTTGACGAGTCGACTCGGCCGCTTTACGAGGAATCGGAGTGCCCGTACATTCAGCCGCAGCTGACCTGCCAAGAACACGGGCGGCCCGACAAGGACTACCAGAAATGGCGGTGGCAGCCCCACGGCTGCGATCTTCCCAGCTTCAATGCCACATTGATGCTCGAGACGATACGAGGGAAGCGGATGATGTTCGTTGGAGATTCTCTGAACCGGGGTCAGTATGTTTCCATGATTTGTCTTCTCCACAAGCTCATCCCGGATGATGCCAAATCCATGGAGACCTTCGACTCAGACTCGCGAACTGTTTTCACAGCCAAGACATACAATGCCACAATCGAGTTCTATTGGGCGCCGTTTCTGCTTGAATCAAACTCGGATAATGCTATCGTCCATAGGATATCTGACAGGATTGTAAGGAAAGGGTCCATCAATAAGCACGGCAAACATTGGAAGGGCGTTGATTTATTGGTGTTCAATACTTATCTGTGGTGGATGACCGGCGTGGAATTTAAAATAATACTAGGTTCCTTCAATGATGAGGTGAAAGATATTGTGAAGCTGCCAACGACAGAGGCTTATCGTATGGCGATGAAAACTATGTTAAGATGGGTGCGGAAGAACATGGACCCCAAGAAGACAAGGGTCTTTTTCACTAGCATGTCACCTTCTCATGGAAATGGTATAGAATGGGGAGGTGAACCAGGAGGTAACTGTTACAACCAGACTACTTTGATTGAGGATCCAAACTACTGGGGTTCAGATTCCCGGAAAAACATAATGGAGGTAATTGGAGATGTATTTAGTAAATCGAAGGTGCCCATTTCTTTTCTCAACATCACGCAACTCTCAAACTATCGCAAGGACGCCCACACATCAATCTACAAGAAGCAGTGGTCCCCTCTGACTCCCGAGCAAATAGCCAACCCTGTTAGCTATGCCGATTGCGTGCATTGGTGTTTGCCTGGCCTTCAAGATACTTGGAACGAGCTTCTGTTCGCCAAACTTTTCTATCCTTGA

Protein Analysis

423

Amino Acids

48.56

Weight (kDa)

8.24

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 75 - 128 9.7e-25 PMR5 N terminal Domain
PC-Esterase PF13839 129 - 417 6.2e-89 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40320
fragaria_vesca FvH4_7g25160 FvH4_7g25160
malus_domestica MD01G1158300.v1.1 MD07G1227000.v1.1
prunus_persica Prupe.2G256600_v2.0.a1
pyrus_communis pycom01g17500 pycom07g20560
rosa_chinensis RchiOBHm_Chr1g0371061
rosa_laevigata RLG00000026989
rosa_multiflora Rmu_sc0001018.1_g000029
rosa_roxburghii Rroxscaffold_4G00286010 Rroxscaffold_4G00286020
rosa_rugosa Rorug01G0361200
rosa_samantha Rh1CG348200 Rh1DG366100
rosa_wichuraiana Rw1G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 131
Acc36I ACCTGC 2 cut(s) 131, 326
AccB1I GGYRCC 2 cut(s) 601, 1066
AccI GTMKAC 1 cut(s) 263
AccII CGCG 2 cut(s) 113, 550
AclWI GGATC 2 cut(s) 986, 999
AcoI YGGCCR 2 cut(s) 133, 269
AcsI RAATTY 1 cut(s) 758
AcyI GRCGYC 2 cut(s) 602, 1116
AfaI GTAC 2 cut(s) 17, 299
AfiI CCNNNNNNNGG 2 cut(s) 222, 923
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 5 cut(s) 397, 617, 727, 784, 1223
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 952, 1213
AluBI AGCT 8 cut(s) 156, 193, 313, 393, 502, 811, 1185, 1240
AluI AGCT 8 cut(s) 156, 193, 313, 393, 502, 811, 1185, 1240
Alw26I GTCTC 3 cut(s) 100, 410, 524
AlwI GGATC 2 cut(s) 986, 999
Ama87I CYCGRG 2 cut(s) 413, 1160
AoxI GGCC 4 cut(s) 133, 269, 335, 1216
ApeKI GCWGC 5 cut(s) 193, 310, 367, 378, 811
ApoI RAATTY 1 cut(s) 758
AspLEI GCGC 2 cut(s) 113, 604
AspS9I GGNCC 5 cut(s) 115, 336, 675, 877, 1146
AsuC2I CCSGG 3 cut(s) 464, 509, 1018
AsuHPI GGTGA 6 cut(s) 61, 112, 139, 805, 906, 959
AvaI CYCGRG 2 cut(s) 413, 1160
AvaII GGWCC 4 cut(s) 115, 675, 877, 1146
BaeGI GKGCMC 2 cut(s) 296, 1071
BamHI GGATCC 1 cut(s) 991
BanI GGYRCC 2 cut(s) 601, 1066
BbsI GAAGAC 3 cut(s) 28, 482, 893
BbvI GCAGC 5 cut(s) 180, 322, 365, 379, 798
BccI CCATC 2 cut(s) 686, 852
BceAI ACGGC 7 cut(s) 17, 124, 181, 188, 391, 589, 706
BciT130I CCWGG 2 cut(s) 954, 1215
BcnI CCSGG 3 cut(s) 464, 509, 1018
BcoDI GTCTC 3 cut(s) 100, 410, 524
BfaI CTAG 3 cut(s) 48, 773, 906
BfoI RGCGCY 1 cut(s) 605
BfuAI ACCTGC 2 cut(s) 131, 326
BisI GCNGC 9 cut(s) 30, 194, 272, 308, 311, 335, 368, 379, 812
BlsI GCNGC 9 cut(s) 31, 195, 273, 309, 312, 336, 369, 380, 813
Bme1390I CCNGG 5 cut(s) 464, 509, 954, 1018, 1215
Bme18I GGWCC 4 cut(s) 115, 675, 877, 1146
BmeT110I CYCGRG 2 cut(s) 413, 1160
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 5 cut(s) 115, 336, 675, 877, 1146
BmiI GGNNCC 7 cut(s) 603, 676, 778, 879, 993, 1068, 1148
BmrFI CCNGG 5 cut(s) 464, 509, 954, 1018, 1215
BmrI ACTGGG 1 cut(s) 1012
BmsI GCATC 2 cut(s) 399, 505
BmuI ACTGGG 1 cut(s) 1012
BoxI GACNNNNGTC 1 cut(s) 893
BpiI GAAGAC 3 cut(s) 28, 482, 893
BpuMI CCSGG 3 cut(s) 464, 509, 1018
BsaHI GRCGYC 2 cut(s) 602, 1116
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 3 cut(s) 373, 463, 525
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 923
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 1 cut(s) 1007
BseBI CCWGG 2 cut(s) 954, 1215
BseDI CCNNGG 3 cut(s) 373, 463, 525
BseGI GGATG 4 cut(s) 441, 504, 517, 750
BseLI CCNNNNNNNGG 2 cut(s) 222, 923
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 1 cut(s) 1007
BseRI GAGGAG 4 cut(s) 10, 13, 65, 200
BseSI GKGCMC 2 cut(s) 296, 1071
BseX3I CGGCCG 1 cut(s) 269
BseXI GCAGC 5 cut(s) 180, 322, 365, 379, 798
BseYI CCCAGC 1 cut(s) 389
Bsh1236I CGCG 2 cut(s) 113, 550
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 4 cut(s) 135, 271, 337, 1218
BshNI GGYRCC 2 cut(s) 601, 1066
BsiEI CGRYCG 1 cut(s) 272
BsiHKCI CYCGRG 2 cut(s) 413, 1160
BsiSI CCGG 4 cut(s) 463, 509, 750, 1018
BslFI GGGAC 1 cut(s) 1132
BslI CCNNNNNNNGG 2 cut(s) 222, 923
BsmAI GTCTC 3 cut(s) 100, 410, 524
BsmBI CGTCTC 2 cut(s) 100, 410
BsmFI GGGAC 1 cut(s) 1132
BsnI GGCC 4 cut(s) 135, 271, 337, 1218
Bso31I GGTCTC 1 cut(s) 524
BsoBI CYCGRG 2 cut(s) 413, 1160
Bsp1286I GDGCHC 2 cut(s) 296, 1071
Bsp143I GATC 2 cut(s) 382, 991
Bsp19I CCATGG 1 cut(s) 525
Bsp68I TCGCGA 1 cut(s) 550
BspANI GGCC 4 cut(s) 135, 271, 337, 1218
BspCNI CTCAG 1 cut(s) 554
BspFNI CGCG 2 cut(s) 113, 550
BspLI GGNNCC 7 cut(s) 603, 676, 778, 879, 993, 1068, 1148
BspMI ACCTGC 2 cut(s) 131, 326
BspPI GGATC 2 cut(s) 986, 999
BspT107I GGYRCC 2 cut(s) 601, 1066
BspTNI GGTCTC 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 749
BsrI ACTGG 1 cut(s) 1007
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 3 cut(s) 373, 463, 525
BssMI GATC 2 cut(s) 382, 991
BssNI GRCGYC 2 cut(s) 602, 1116
BssT1I CCWWGG 1 cut(s) 525
Bst2UI CCWGG 2 cut(s) 954, 1215
Bst4CI ACNGT 4 cut(s) 140, 181, 556, 965
Bst6I CTCTTC 2 cut(s) 71, 95
BstACI GRCGYC 2 cut(s) 602, 1116
BstC8I GCNNGC 1 cut(s) 1199
BstDEI CTNAG 1 cut(s) 541
BstDSI CCRYGG 2 cut(s) 373, 525
BstF5I GGATG 4 cut(s) 441, 504, 517, 750
BstFNI CGCG 2 cut(s) 113, 550
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 2 cut(s) 113, 604
BstKTI GATC 2 cut(s) 385, 994
BstMAI GTCTC 3 cut(s) 100, 410, 524
BstMBI GATC 2 cut(s) 382, 991
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 3 cut(s) 132, 367, 610
BstNI CCWGG 2 cut(s) 954, 1215
BstNSI RCATGY 1 cut(s) 913
BstPAI GACNNNNGTC 1 cut(s) 893
BstSCI CCNGG 5 cut(s) 462, 507, 952, 1016, 1213
BstSLI GKGCMC 2 cut(s) 296, 1071
BstUI CGCG 2 cut(s) 113, 550
BstV1I GCAGC 5 cut(s) 180, 322, 365, 379, 798
BstV2I GAAGAC 3 cut(s) 28, 482, 893
BstX2I RGATCY 1 cut(s) 991
BstXI CCANNNNNNTGG 2 cut(s) 526, 1002
BstYI RGATCY 1 cut(s) 991
BstZI CGGCCG 1 cut(s) 269
BsuRI GGCC 4 cut(s) 135, 271, 337, 1218
BtgI CCRYGG 2 cut(s) 373, 525
BtgZI GCGATG 1 cut(s) 854
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 4 cut(s) 441, 504, 517, 750
BtsI GCAGTG 1 cut(s) 1148
BtsIMutI CAGTG 1 cut(s) 1148
BtuMI TCGCGA 1 cut(s) 550
BveI ACCTGC 2 cut(s) 131, 326
Cac8I GCNNGC 1 cut(s) 1199
CfoI GCGC 2 cut(s) 113, 604
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 5 cut(s) 115, 336, 675, 877, 1146
CseI GACGC 1 cut(s) 1124
Csp6I GTAC 2 cut(s) 16, 298
CviAII CATG 5 cut(s) 481, 526, 874, 910, 923
CviQI GTAC 2 cut(s) 16, 298
DdeI CTNAG 1 cut(s) 541
DinI GGCGCC 1 cut(s) 603
DpnI GATC 2 cut(s) 384, 993
DpnII GATC 2 cut(s) 382, 991
DraI TTTAAA 1 cut(s) 763
EaeI YGGCCR 2 cut(s) 133, 269
EagI CGGCCG 1 cut(s) 269
Eam1104I CTCTTC 2 cut(s) 71, 95
EarI CTCTTC 2 cut(s) 71, 95
EciI GGCGGA 1 cut(s) 16
EclXI CGGCCG 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 524
Eco32I GATATC 1 cut(s) 651
Eco47I GGWCC 4 cut(s) 115, 675, 877, 1146
Eco52I CGGCCG 1 cut(s) 269
Eco88I CYCGRG 2 cut(s) 413, 1160
EcoRII CCWGG 2 cut(s) 952, 1213
EcoRV GATATC 1 cut(s) 651
EcoT14I CCWWGG 1 cut(s) 525
EgeI GGCGCC 1 cut(s) 603
EheI GGCGCC 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 525
Esp3I CGTCTC 2 cut(s) 100, 410
FaeI CATG 5 cut(s) 484, 529, 877, 913, 926
FaqI GGGAC 1 cut(s) 1132
FatI CATG 5 cut(s) 480, 525, 873, 909, 922
FauI CCCGC 1 cut(s) 233
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 9 cut(s) 30, 194, 272, 308, 311, 335, 368, 379, 812
FokI GGATG 4 cut(s) 448, 491, 524, 757
Fsp4HI GCNGC 9 cut(s) 30, 194, 272, 308, 311, 335, 368, 379, 812
FspBI CTAG 3 cut(s) 48, 773, 906
GlaI GCGC 2 cut(s) 112, 603
GluI GCNGC 9 cut(s) 30, 194, 272, 308, 311, 335, 368, 379, 812
GsaI CCCAGC 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 4 cut(s) 135, 271, 337, 1218
HapII CCGG 4 cut(s) 463, 509, 750, 1018
HgaI GACGC 1 cut(s) 1124
HhaI GCGC 2 cut(s) 113, 604
Hin1I GRCGYC 2 cut(s) 602, 1116
Hin1II CATG 5 cut(s) 484, 529, 877, 913, 926
Hin6I GCGC 2 cut(s) 111, 602
HinP1I GCGC 2 cut(s) 111, 602
HincII GTYRAC 2 cut(s) 143, 264
HindII GTYRAC 2 cut(s) 143, 264
HpaII CCGG 4 cut(s) 463, 509, 750, 1018
HphI GGTGA 6 cut(s) 61, 112, 139, 805, 906, 959
Hpy166II GTNNAC 3 cut(s) 143, 264, 950
Hpy188I TCNGA 8 cut(s) 160, 289, 459, 544, 628, 655, 1012, 1155
Hpy188III TCNNGA 4 cut(s) 415, 549, 1160, 1223
Hpy8I GTNNAC 3 cut(s) 143, 264, 950
Hpy99I CGWCG 3 cut(s) 209, 221, 233
HpyAV CCTTC 8 cut(s) 91, 215, 544, 697, 790, 927, 1057, 1229
HpyCH4III ACNGT 4 cut(s) 140, 181, 556, 965
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 126, 1201
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 367, 610
HpyF3I CTNAG 1 cut(s) 541
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 2 cut(s) 602, 1116
Hsp92II CATG 5 cut(s) 484, 529, 877, 913, 926
HspAI GCGC 2 cut(s) 111, 602
KasI GGCGCC 1 cut(s) 601
Kzo9I GATC 2 cut(s) 382, 991
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 5 cut(s) 180, 322, 365, 379, 798
LweI GCATC 2 cut(s) 399, 505
MaeI CTAG 3 cut(s) 48, 773, 906
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 3 cut(s) 912, 959, 965
MalI GATC 2 cut(s) 384, 993
MboI GATC 2 cut(s) 382, 991
MboII GAAGA 7 cut(s) 28, 58, 82, 377, 482, 880, 898
MflI RGATCY 1 cut(s) 991
MhlI GDGCHC 2 cut(s) 296, 1071
MluCI AATT 2 cut(s) 758, 1038
Mly113I GGCGCC 1 cut(s) 602
MlyI GAGTC 6 cut(s) 45, 259, 269, 533, 539, 1150
MmeI TCCRAC 2 cut(s) 183, 427
MseI TTAA 2 cut(s) 762, 854
MslI CAYNNNNRTG 3 cut(s) 407, 908, 927
MspA1I CMGCKG 2 cut(s) 240, 313
MspI CCGG 4 cut(s) 463, 509, 750, 1018
MspR9I CCNGG 5 cut(s) 464, 509, 954, 1018, 1215
MvaI CCWGG 2 cut(s) 954, 1215
MvnI CGCG 2 cut(s) 113, 550
MwoI GCNNNNNNNGC 3 cut(s) 132, 367, 610
NarI GGCGCC 1 cut(s) 602
NciI CCSGG 3 cut(s) 464, 509, 1018
NcoI CCATGG 1 cut(s) 525
NdeII GATC 2 cut(s) 382, 991
NlaIII CATG 5 cut(s) 484, 529, 877, 913, 926
NlaIV GGNNCC 7 cut(s) 603, 676, 778, 879, 993, 1068, 1148
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 912
NruI TCGCGA 1 cut(s) 550
NspI RCATGY 1 cut(s) 913
PaeR7I CTCGAG 1 cut(s) 413
PaqCI CACCTGC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 5 cut(s) 90, 213, 225, 293, 336
PfeI GAWTC 4 cut(s) 284, 452, 617, 1013
PfoI TCCNGGA 2 cut(s) 507, 1016
PkrI GCNGC 9 cut(s) 31, 195, 273, 309, 312, 336, 369, 380, 813
PleI GAGTC 6 cut(s) 45, 259, 268, 533, 539, 1150
PluTI GGCGCC 1 cut(s) 605
PpsI GAGTC 6 cut(s) 45, 259, 268, 533, 539, 1150
PshAI GACNNNNGTC 1 cut(s) 893
Psp6I CCWGG 2 cut(s) 952, 1213
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 2 cut(s) 952, 1213
PspN4I GGNNCC 7 cut(s) 603, 676, 778, 879, 993, 1068, 1148
PspPI GGNCC 5 cut(s) 115, 336, 675, 877, 1146
PsuI RGATCY 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 313
RruI TCGCGA 1 cut(s) 550
RsaI GTAC 2 cut(s) 17, 299
RsaNI GTAC 2 cut(s) 16, 298
RseI CAYNNNNRTG 3 cut(s) 407, 908, 927
SalI GTCGAC 1 cut(s) 262
SaqAI TTAA 2 cut(s) 762, 854
SatI GCNGC 9 cut(s) 30, 194, 272, 308, 311, 335, 368, 379, 812
Sau3AI GATC 2 cut(s) 382, 991
Sau96I GGNCC 5 cut(s) 115, 336, 675, 877, 1146
SchI GAGTC 6 cut(s) 45, 259, 269, 533, 539, 1150
ScrFI CCNGG 5 cut(s) 464, 509, 954, 1018, 1215
SduI GDGCHC 2 cut(s) 296, 1071
SfaNI GCATC 2 cut(s) 399, 505
SfoI GGCGCC 1 cut(s) 603
Sfr274I CTCGAG 1 cut(s) 413
SinI GGWCC 4 cut(s) 115, 675, 877, 1146
SlaI CTCGAG 1 cut(s) 413
SmiMI CAYNNNNRTG 3 cut(s) 407, 908, 927
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 2 cut(s) 758, 1038
SspDI GGCGCC 1 cut(s) 601
SspMI CTAG 3 cut(s) 48, 773, 906
StyD4I CCNGG 5 cut(s) 462, 507, 952, 1016, 1213
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 4 cut(s) 140, 181, 556, 965
TaiI ACGT 1 cut(s) 234
TaqI TCGA 5 cut(s) 263, 414, 537, 588, 1061
TaqII GACCGA 1 cut(s) 230
TasI AATT 2 cut(s) 758, 1038
TauI GCSGC 4 cut(s) 32, 274, 310, 337
TfiI GAWTC 4 cut(s) 284, 452, 617, 1013
Tru1I TTAA 2 cut(s) 762, 854
Tru9I TTAA 2 cut(s) 762, 854
TscAI CASTG 1 cut(s) 1148
TseFI GTSAC 1 cut(s) 912
TseI GCWGC 5 cut(s) 193, 310, 367, 378, 811
Tsp45I GTSAC 1 cut(s) 912
TspDTI ATGAA 2 cut(s) 17, 857
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 1 cut(s) 1148
VpaK11BI GGWCC 4 cut(s) 115, 675, 877, 1146
XapI RAATTY 1 cut(s) 758
XceI RCATGY 1 cut(s) 913
XhoI CTCGAG 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 263
XspI CTAG 3 cut(s) 48, 773, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.