Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014283

Physical Location & Seq

Genomic Coordinates Reverse (-)

7178698 .. 7189690

Gene Structure 10993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTACAACTTCACCCAACAGCTCCAACTCGGCCCCGGCAGCTTCGACCTCCGTGGACTCATCAGCACAACATCAAGAGTAGCATTCTCTTCATTACATGTTGGATCAAAAGATTACAATGCAACGATTGAGTTCTACTGGCCGGCAACATTTCTGCTTGAATCAAACTCAGGCAATGCTCTCCACCATAGGGTATCCCATAGGGTTGTAAGGAAAGGATCAATCAATAAGCATGAAAACATTGGAAGAATGTGCCCAATCACAGAGGCTTATCGTATGGCCATGAAAAGTTTAAAAGATGGGTGGAGAATGGAGAAGAATATGGATCCTAGGAAGAGAAGACTATTTTTCACTAGCATGTCACCTCCATGGAAAACTTTTGAGTCCCCTACATATATAATGGAGCTAATAAGAGAGGCATTCAGCAAATCAAAAGTGCCAATTACACTTCTGAACATCATCAAACTCTCAAGCTATCGCAGAGACGCGCACACGTCAATATACAAGAAGCAATGGAGTCCAGAGCAGTTAGCAAACCCTACTAGCGATGCAGATTGTGTGTGTTGGTGCTTGTCTGGCCTTCAAGATACTTGGAATGAGCTTCTTGCAAAACTTTTCTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1990538 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

208

Amino Acids

24.1

Weight (kDa)

9.56

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	132 - 204	9.3e-20	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40320
fragaria_vesca	FvH4_7g25160 FvH4_7g25160
malus_domestica	MD01G1158300.v1.1 MD07G1227000.v1.1
prunus_persica	Prupe.2G256600_v2.0.a1
pyrus_communis	pycom01g17500 pycom07g20560
rosa_chinensis	RchiOBHm_Chr1g0371061
rosa_laevigata	RLG00000026989
rosa_multiflora	Rmu_sc0001018.1_g000029
rosa_roxburghii	Rroxscaffold_4G00286010 Rroxscaffold_4G00286020
rosa_rugosa	Rorug01G0361200
rosa_samantha	Rh1CG348200 Rh1DG366100
rosa_wichuraiana	Rw1G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	488
AclWI	GGATC	4 cut(s)	112, 226, 320, 333
AcoI	YGGCCR	2 cut(s)	140, 279
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	2 cut(s)	97, 492
AgsI	TTSAA	2 cut(s)	161, 584
AjiI	CACGTC	1 cut(s)	495
AluBI	AGCT	5 cut(s)	22, 42, 406, 474, 601
AluI	AGCT	5 cut(s)	22, 42, 406, 474, 601
Alw26I	GTCTC	1 cut(s)	477
AlwI	GGATC	4 cut(s)	112, 226, 320, 333
AoxI	GGCC	4 cut(s)	31, 140, 279, 577
ApeKI	GCWGC	1 cut(s)	39
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	4, 354
AvrII	CCTAGG	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	477
BfaI	CTAG	3 cut(s)	330, 354, 543
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	40
BlnI	CCTAGG	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	34, 327
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	34, 52, 329, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	143
Bse3DI	GCAATG	2 cut(s)	181, 518
BseDI	CCNNGG	4 cut(s)	34, 52, 329, 368
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	2 cut(s)	181, 518
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	488
BshFI	GGCC	4 cut(s)	33, 142, 281, 579
BsiSI	CCGG	2 cut(s)	36, 143
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	477
BsmBI	CGTCTC	1 cut(s)	477
BsmFI	GGGAC	1 cut(s)	370
BsmI	GAATGC	2 cut(s)	83, 419
BsnI	GGCC	4 cut(s)	33, 142, 281, 579
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	104, 218, 325
Bsp19I	CCATGG	1 cut(s)	368
BspANI	GGCC	4 cut(s)	33, 142, 281, 579
BspCNI	CTCAG	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	488
BspLI	GGNNCC	2 cut(s)	34, 327
BspPI	GGATC	4 cut(s)	112, 226, 320, 333
BsrDI	GCAATG	2 cut(s)	181, 518
BsrFI	RCCGGY	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	4 cut(s)	34, 52, 329, 368
BssMI	GATC	3 cut(s)	104, 218, 325
BssT1I	CCWWGG	2 cut(s)	329, 368
Bst6I	CTCTTC	2 cut(s)	94, 329
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	169
BstDSI	CCRYGG	2 cut(s)	52, 368
BstFNI	CGCG	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	3 cut(s)	107, 221, 328
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	3 cut(s)	104, 218, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 576
BstNSI	RCATGY	2 cut(s)	101, 361
BstSCI	CCNGG	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	257
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	4 cut(s)	33, 142, 281, 579
BtgI	CCRYGG	2 cut(s)	52, 368
BtgZI	GCGATG	1 cut(s)	561
BtrI	CACGTC	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	5 cut(s)	98, 233, 283, 358, 369
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	3 cut(s)	106, 220, 327
DpnII	GATC	3 cut(s)	104, 218, 325
DraI	TTTAAA	1 cut(s)	294
EaeI	YGGCCR	2 cut(s)	140, 279
Eam1104I	CTCTTC	2 cut(s)	94, 329
EarI	CTCTTC	2 cut(s)	94, 329
Eco130I	CCWWGG	2 cut(s)	329, 368
EcoT14I	CCWWGG	2 cut(s)	329, 368
ErhI	CCWWGG	2 cut(s)	329, 368
Esp3I	CGTCTC	1 cut(s)	477
FaeI	CATG	5 cut(s)	101, 236, 286, 361, 372
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	5 cut(s)	97, 232, 282, 357, 368
Fnu4HI	GCNGC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	3 cut(s)	330, 354, 543
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	1 cut(s)	40
HaeIII	GGCC	4 cut(s)	33, 142, 281, 579
HapII	CCGG	2 cut(s)	36, 143
HgaI	GACGC	1 cut(s)	494
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	5 cut(s)	101, 236, 286, 361, 372
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HinfI	GANTC	4 cut(s)	57, 161, 383, 517
HpaII	CCGG	2 cut(s)	36, 143
HphI	GGTGA	2 cut(s)	4, 354
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	3 cut(s)	75, 521, 584
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	590
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	3 cut(s)	122, 551, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 576
HpyF3I	CTNAG	1 cut(s)	169
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	5 cut(s)	101, 236, 286, 361, 372
HspAI	GCGC	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	104, 218, 325
LmnI	GCTCC	2 cut(s)	27, 403
LpnPI	CCDG	6 cut(s)	49, 124, 156, 156, 534, 561
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	3 cut(s)	330, 354, 543
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	3 cut(s)	106, 220, 327
MboI	GATC	3 cut(s)	104, 218, 325
MboII	GAAGA	5 cut(s)	81, 258, 328, 346, 351
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	1 cut(s)	441
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	3 cut(s)	51, 392, 526
MmeI	TCCRAC	2 cut(s)	49, 82
MnlI	CCTC	4 cut(s)	59, 259, 375, 409
Mox20I	TGGCCA	1 cut(s)	281
MroNI	GCCGGC	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	2 cut(s)	356, 367
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	2 cut(s)	36, 143
MspR9I	CCNGG	1 cut(s)	36
Mva1269I	GAATGC	2 cut(s)	83, 419
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	2 cut(s)	39, 576
NaeI	GCCGGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	3 cut(s)	104, 218, 325
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	5 cut(s)	101, 236, 286, 361, 372
NlaIV	GGNNCC	2 cut(s)	34, 327
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	360
NspI	RCATGY	2 cut(s)	101, 361
PciI	ACATGT	1 cut(s)	97
PctI	GAATGC	2 cut(s)	83, 419
PdiI	GCCGGC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	3 cut(s)	51, 391, 525
PpsI	GAGTC	3 cut(s)	51, 391, 525
PscI	ACATGT	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	34, 327
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	356, 367
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	3 cut(s)	104, 218, 325
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	3 cut(s)	51, 392, 526
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	8 cut(s)	24, 44, 51, 367, 408, 476, 497, 603
SfaNI	GCATC	1 cut(s)	538
SmiMI	CAYNNNNRTG	2 cut(s)	356, 367
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	1 cut(s)	441
SspMI	CTAG	3 cut(s)	330, 354, 543
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	2 cut(s)	329, 368
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	441
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	39
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	3 cut(s)	81, 249, 299
TspGWI	ACGGA	1 cut(s)	41
XceI	RCATGY	2 cut(s)	101, 361
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	3 cut(s)	330, 354, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.