pycom07g20560

Protein trichome birefringence-like 33

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
22592865 .. 22595766
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g20560.3

Sequence Viewer

Length: 1296 bp
ATGAGACTAATGAAGCCGCCGCCGCTCTCCTCCTCCTCCGCCGCCGCCGCCGTCTTCCGCAAGGCTCGACTCTCTCCCTACCTCTTCACCCTCCTCGTCTTCATCCTCTTCGTCTGCGTCCTCTACGGCGAGGATCTCACCTGCATTTTCGGCCAGCAGCTCCAACTCACCTCCAGCTCCGACCCAATCGTCATCAAAACAGGGAAGAAGAGAGAGAAGCTGCCGTTCGCCGTCGGCAAGACCGACGAAGGTTGTGACTTGTTCAGCGGGAGGTGGGTCTTCGACGAGTCAACTCGGCCGCTTTACGAGGAATCGGAGTGCCCGTACATCCAGCCACAGTTGACCTGCCAAGAACACGGGCGGCCGGACAAGGACTACCAGAAATGGCGGTGGCAGCCCCACGGCTGCGATCTTCCCAGCTTCAATGCCACTTTGATGCTCGAGACGCTACGAGGGAAGCGGATGATGTTCGTTGGAGACTCTCTGAACCGGGGTCAGTATGTTTCCATGATTTGTCTTCTCCACAAACTCATCCCGGATGATGCCAAATCCATGGAGAGCTTTGACTCAGACTCGCGAACTGTTTTCACGGCCAAGACATACAATGCCACAATCGAGTTCTATTGGGCGCCGTTTCTTCTTGAATCAAACGCGGATAATGCTGTCGTCCATAGGATATCTGATAGGCTTGTAAGGAAAGGGTCCATCAATAAGCACGGCAAACATTGGAAGAGCGTTGATGTATTGGTGTTCAATACTTATCTGTGGTGGATGACCGGCTTGGAATTTAAAATATTACTAGGTTCCTTCAATGATGAGGTGAAAGATATTGTGAATGTGCCAACGACAGAGGCTTATCGTATGGCGATGAAAACTATGTTAAGATGGGTGCGGAGGAACATGGACCCCAAGAAGACGAGGGTCTTTTTCACTAGCATGTCTCCTTCTCATGGAAAGAGTATAGAATGGGGAGGTGAACCAGGAGGCAACTGCTACAACCAGACTACTTTGATTGAAGATCCGAACTACTGGGGTTCAGATTCCCGGAAAAACATAATGGAGGTAATTGGAGAAGTATTCAGTAAAACGAAGGTGCCCATTTCTTTCCTCAACATCACGCAACTTTCAAACTATCGCAAGGATGCGCACACATCAATCTACAAGAAGCAGTGGAACCCTCTGACTCCCGAGCAATTAGCCAACCCTGTTAGCTATGCTGATTGCGTGCATTGGTGTTTGCCTGGCATTCAAGATACCTGGAATGAGCTTCTGTTCGCCAAACTTTTCTATCCTTGA

Protein Analysis

432

Amino Acids

49.64

Weight (kDa)

8.65

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40320
fragaria_vesca FvH4_7g25160 FvH4_7g25160
malus_domestica MD01G1158300.v1.1 MD07G1227000.v1.1
prunus_persica Prupe.2G256600_v2.0.a1
pyrus_communis pycom01g17500 pycom07g20560
rosa_chinensis RchiOBHm_Chr1g0371061
rosa_laevigata RLG00000026989
rosa_multiflora Rmu_sc0001018.1_g000029
rosa_roxburghii Rroxscaffold_4G00286010 Rroxscaffold_4G00286020
rosa_rugosa Rorug01G0361200
rosa_samantha Rh1CG348200 Rh1DG366100
rosa_wichuraiana Rw1G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
AasI GACNNNNNNGTC 1 cut(s) 188
Acc16I TGCGCA 1 cut(s) 1146
Acc36I ACCTGC 2 cut(s) 149, 353
AccB1I GGYRCC 2 cut(s) 628, 1093
AccBSI CCGCTC 1 cut(s) 25
AccII CGCG 2 cut(s) 577, 653
AclWI GGATC 2 cut(s) 141, 1013
AcoI YGGCCR 4 cut(s) 151, 296, 362, 591
AcsI RAATTY 1 cut(s) 785
AcyI GRCGYC 1 cut(s) 629
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 950
AgsI TTSAA 7 cut(s) 424, 644, 754, 811, 1016, 1128, 1250
AjnI CCWGG 3 cut(s) 979, 1240, 1256
AluBI AGCT 7 cut(s) 160, 177, 220, 420, 561, 1212, 1267
AluI AGCT 7 cut(s) 160, 177, 220, 420, 561, 1212, 1267
Alw26I GTCTC 3 cut(s) 437, 471, 945
AlwI GGATC 2 cut(s) 141, 1013
Ama87I CYCGRG 2 cut(s) 440, 1187
AoxI GGCC 4 cut(s) 151, 296, 362, 591
ApeKI GCWGC 4 cut(s) 157, 220, 394, 405
ApoI RAATTY 1 cut(s) 785
AspLEI GCGC 2 cut(s) 631, 1147
AspS9I GGNCC 2 cut(s) 702, 904
AsuC2I CCSGG 3 cut(s) 491, 536, 1045
AsuHPI GGTGA 5 cut(s) 79, 130, 160, 832, 986
AvaI CYCGRG 2 cut(s) 440, 1187
AvaII GGWCC 2 cut(s) 702, 904
BaeGI GKGCMC 2 cut(s) 323, 1098
BanI GGYRCC 2 cut(s) 628, 1093
BbsI GAAGAC 5 cut(s) 46, 91, 271, 509, 920
BbvI GCAGC 4 cut(s) 169, 207, 392, 406
BccI CCATC 2 cut(s) 713, 879
BceAI ACGGC 8 cut(s) 35, 142, 208, 215, 418, 606, 616, 733
BciT130I CCWGG 3 cut(s) 981, 1242, 1258
BcnI CCSGG 3 cut(s) 491, 536, 1045
BcoDI GTCTC 3 cut(s) 437, 471, 945
BfaI CTAG 2 cut(s) 800, 933
BfoI RGCGCY 1 cut(s) 632
BfuAI ACCTGC 2 cut(s) 149, 353
Bme1390I CCNGG 6 cut(s) 491, 536, 981, 1045, 1242, 1258
Bme18I GGWCC 2 cut(s) 702, 904
BmeT110I CYCGRG 2 cut(s) 440, 1187
BmgT120I GGNCC 2 cut(s) 702, 904
BmiI GGNNCC 6 cut(s) 630, 703, 805, 906, 1095, 1175
BmrFI CCNGG 6 cut(s) 491, 536, 981, 1045, 1242, 1258
BmrI ACTGGG 1 cut(s) 1039
BmsI GCATC 3 cut(s) 426, 532, 1132
BmuI ACTGGG 1 cut(s) 1039
BoxI GACNNNNGTC 1 cut(s) 920
BpiI GAAGAC 5 cut(s) 46, 91, 271, 509, 920
BpmI CTGGAG 1 cut(s) 157
BpuMI CCSGG 3 cut(s) 491, 536, 1045
BsaHI GRCGYC 1 cut(s) 629
BsaJI CCNNGG 3 cut(s) 400, 490, 552
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 950
Bse118I RCCGGY 1 cut(s) 776
Bse1I ACTGG 1 cut(s) 1034
BseBI CCWGG 3 cut(s) 981, 1242, 1258
BseDI CCNNGG 3 cut(s) 400, 490, 552
BseGI GGATG 7 cut(s) 102, 327, 468, 531, 544, 777, 1147
BseLI CCNNNNNNNGG 1 cut(s) 950
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 1 cut(s) 1034
BseRI GAGGAG 4 cut(s) 19, 22, 25, 83
BseSI GKGCMC 2 cut(s) 323, 1098
BseX3I CGGCCG 2 cut(s) 296, 362
BseXI GCAGC 4 cut(s) 169, 207, 392, 406
BseYI CCCAGC 1 cut(s) 416
Bsh1236I CGCG 2 cut(s) 577, 653
Bsh1285I CGRYCG 2 cut(s) 299, 365
BshFI GGCC 4 cut(s) 153, 298, 364, 593
BshNI GGYRCC 2 cut(s) 628, 1093
BsiEI CGRYCG 2 cut(s) 299, 365
BsiHKCI CYCGRG 2 cut(s) 440, 1187
BsiSI CCGG 5 cut(s) 365, 490, 536, 777, 1045
BslI CCNNNNNNNGG 1 cut(s) 950
BsmAI GTCTC 3 cut(s) 437, 471, 945
BsmBI CGTCTC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 1245
BsnI GGCC 4 cut(s) 153, 298, 364, 593
BsoBI CYCGRG 2 cut(s) 440, 1187
Bsp1286I GDGCHC 2 cut(s) 323, 1098
Bsp143I GATC 3 cut(s) 133, 409, 1018
Bsp19I CCATGG 1 cut(s) 552
Bsp68I TCGCGA 1 cut(s) 577
BspANI GGCC 4 cut(s) 153, 298, 364, 593
BspCNI CTCAG 1 cut(s) 581
BspFNI CGCG 2 cut(s) 577, 653
BspLI GGNNCC 6 cut(s) 630, 703, 805, 906, 1095, 1175
BspMI ACCTGC 2 cut(s) 149, 353
BspPI GGATC 2 cut(s) 141, 1013
BspQI GCTCTTC 1 cut(s) 725
BspT107I GGYRCC 2 cut(s) 628, 1093
BsrBI CCGCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 776
BsrI ACTGG 1 cut(s) 1034
BssAI RCCGGY 1 cut(s) 776
BssECI CCNNGG 3 cut(s) 400, 490, 552
BssMI GATC 3 cut(s) 133, 409, 1018
BssNI GRCGYC 1 cut(s) 629
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 3 cut(s) 981, 1242, 1258
Bst4CI ACNGT 2 cut(s) 339, 583
Bst6I CTCTTC 4 cut(s) 89, 113, 203, 725
BstACI GRCGYC 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 155, 1226
BstDEI CTNAG 1 cut(s) 568
BstDSI CCRYGG 2 cut(s) 400, 552
BstF5I GGATG 7 cut(s) 102, 327, 468, 531, 544, 777, 1147
BstFNI CGCG 2 cut(s) 577, 653
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 2 cut(s) 631, 1147
BstKTI GATC 3 cut(s) 136, 412, 1021
BstMAI GTCTC 3 cut(s) 437, 471, 945
BstMBI GATC 3 cut(s) 133, 409, 1018
BstMCI CGRYCG 2 cut(s) 299, 365
BstMWI GCNNNNNNNGC 6 cut(s) 22, 47, 150, 394, 445, 659
BstNI CCWGG 3 cut(s) 981, 1242, 1258
BstNSI RCATGY 1 cut(s) 940
BstPAI GACNNNNGTC 1 cut(s) 920
BstSCI CCNGG 6 cut(s) 489, 534, 979, 1043, 1240, 1256
BstSLI GKGCMC 2 cut(s) 323, 1098
BstUI CGCG 2 cut(s) 577, 653
BstV1I GCAGC 4 cut(s) 169, 207, 392, 406
BstV2I GAAGAC 5 cut(s) 46, 91, 271, 509, 920
BstX2I RGATCY 2 cut(s) 133, 1018
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 2 cut(s) 133, 1018
BstZI CGGCCG 2 cut(s) 296, 362
BsuRI GGCC 4 cut(s) 153, 298, 364, 593
BtgI CCRYGG 2 cut(s) 400, 552
BtgZI GCGATG 1 cut(s) 881
BtsCI GGATG 7 cut(s) 102, 327, 468, 531, 544, 777, 1147
BtsI GCAGTG 1 cut(s) 1175
BtsIMutI CAGTG 1 cut(s) 1175
BtuMI TCGCGA 1 cut(s) 577
BveI ACCTGC 2 cut(s) 149, 353
Cac8I GCNNGC 2 cut(s) 155, 1226
CfoI GCGC 2 cut(s) 631, 1147
Cfr10I RCCGGY 1 cut(s) 776
Cfr13I GGNCC 2 cut(s) 702, 904
CseI GACGC 2 cut(s) 106, 454
Csp6I GTAC 1 cut(s) 325
CviAII CATG 5 cut(s) 508, 553, 901, 937, 950
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 568
DinI GGCGCC 1 cut(s) 630
DpnI GATC 3 cut(s) 135, 411, 1020
DpnII GATC 3 cut(s) 133, 409, 1018
DraI TTTAAA 1 cut(s) 790
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 4 cut(s) 151, 296, 362, 591
EagI CGGCCG 2 cut(s) 296, 362
Eam1104I CTCTTC 4 cut(s) 89, 113, 203, 725
EarI CTCTTC 4 cut(s) 89, 113, 203, 725
EciI GGCGGA 1 cut(s) 28
EclXI CGGCCG 2 cut(s) 296, 362
Eco130I CCWWGG 1 cut(s) 552
Eco32I GATATC 1 cut(s) 678
Eco47I GGWCC 2 cut(s) 702, 904
Eco52I CGGCCG 2 cut(s) 296, 362
Eco88I CYCGRG 2 cut(s) 440, 1187
EcoRII CCWGG 3 cut(s) 979, 1240, 1256
EcoRV GATATC 1 cut(s) 678
EcoT14I CCWWGG 1 cut(s) 552
EgeI GGCGCC 1 cut(s) 630
EheI GGCGCC 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 552
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 5 cut(s) 511, 556, 904, 940, 953
FatI CATG 5 cut(s) 507, 552, 900, 936, 949
FauI CCCGC 1 cut(s) 260
FokI GGATG 7 cut(s) 89, 314, 475, 518, 551, 784, 1154
FspAI RTGCGCAY 1 cut(s) 1146
FspBI CTAG 2 cut(s) 800, 933
FspI TGCGCA 1 cut(s) 1146
GlaI GCGC 2 cut(s) 630, 1146
GsaI CCCAGC 1 cut(s) 420
GsuI CTGGAG 1 cut(s) 157
HaeII RGCGCY 1 cut(s) 632
HaeIII GGCC 4 cut(s) 153, 298, 364, 593
HapII CCGG 5 cut(s) 365, 490, 536, 777, 1045
HgaI GACGC 2 cut(s) 106, 454
HhaI GCGC 2 cut(s) 631, 1147
Hin1I GRCGYC 1 cut(s) 629
Hin1II CATG 5 cut(s) 511, 556, 904, 940, 953
Hin6I GCGC 2 cut(s) 629, 1145
HinP1I GCGC 2 cut(s) 629, 1145
HincII GTYRAC 2 cut(s) 291, 342
HindII GTYRAC 2 cut(s) 291, 342
HinfI GANTC 9 cut(s) 69, 287, 311, 479, 566, 572, 644, 1040, 1183
HpaII CCGG 5 cut(s) 365, 490, 536, 777, 1045
HphI GGTGA 5 cut(s) 79, 130, 160, 832, 986
Hpy166II GTNNAC 3 cut(s) 291, 342, 977
Hpy188I TCNGA 8 cut(s) 181, 316, 486, 571, 682, 1023, 1039, 1182
Hpy188III TCNNGA 5 cut(s) 442, 576, 641, 1187, 1250
Hpy8I GTNNAC 3 cut(s) 291, 342, 977
Hpy99I CGWCG 3 cut(s) 236, 248, 287
HpyAV CCTTC 4 cut(s) 242, 817, 954, 1084
HpyCH4III ACNGT 2 cut(s) 339, 583
HpyCH4V TGCA 2 cut(s) 144, 1228
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 47, 150, 394, 445, 659
HpyF3I CTNAG 1 cut(s) 568
Hsp92I GRCGYC 1 cut(s) 629
Hsp92II CATG 5 cut(s) 511, 556, 904, 940, 953
HspAI GCGC 2 cut(s) 629, 1145
KasI GGCGCC 1 cut(s) 628
Kzo9I GATC 3 cut(s) 133, 409, 1018
LguI GCTCTTC 1 cut(s) 725
LmnI GCTCC 2 cut(s) 165, 182
Lsp1109I GCAGC 4 cut(s) 169, 207, 392, 406
LweI GCATC 3 cut(s) 426, 532, 1132
MaeI CTAG 2 cut(s) 800, 933
MaeIII GTNAC 1 cut(s) 254
MalI GATC 3 cut(s) 135, 411, 1020
MbiI CCGCTC 1 cut(s) 25
MboI GATC 3 cut(s) 133, 409, 1018
MflI RGATCY 2 cut(s) 133, 1018
MhlI GDGCHC 2 cut(s) 323, 1098
MluCI AATT 3 cut(s) 785, 1065, 1193
Mly113I GGCGCC 1 cut(s) 629
MlyI GAGTC 6 cut(s) 63, 296, 473, 560, 566, 1177
MmeI TCCRAC 3 cut(s) 187, 204, 454
MseI TTAA 2 cut(s) 789, 881
MslI CAYNNNNRTG 2 cut(s) 434, 935
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 5 cut(s) 365, 490, 536, 777, 1045
MspR9I CCNGG 6 cut(s) 491, 536, 981, 1045, 1242, 1258
Mva1269I GAATGC 1 cut(s) 1245
MvaI CCWGG 3 cut(s) 981, 1242, 1258
MvnI CGCG 2 cut(s) 577, 653
MwoI GCNNNNNNNGC 6 cut(s) 22, 47, 150, 394, 445, 659
NarI GGCGCC 1 cut(s) 629
NciI CCSGG 3 cut(s) 491, 536, 1045
NcoI CCATGG 1 cut(s) 552
NdeII GATC 3 cut(s) 133, 409, 1018
NlaIII CATG 5 cut(s) 511, 556, 904, 940, 953
NlaIV GGNNCC 6 cut(s) 630, 703, 805, 906, 1095, 1175
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 254
NruI TCGCGA 1 cut(s) 577
NsbI TGCGCA 1 cut(s) 1146
NspI RCATGY 1 cut(s) 940
PaeR7I CTCGAG 1 cut(s) 440
PaqCI CACCTGC 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 725
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 320
PctI GAATGC 1 cut(s) 1245
PfeI GAWTC 3 cut(s) 311, 644, 1040
PfoI TCCNGGA 2 cut(s) 534, 1043
PleI GAGTC 6 cut(s) 63, 295, 473, 560, 566, 1177
PluTI GGCGCC 1 cut(s) 632
PpsI GAGTC 6 cut(s) 63, 295, 473, 560, 566, 1177
PshAI GACNNNNGTC 1 cut(s) 920
Psp6I CCWGG 3 cut(s) 979, 1240, 1256
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 3 cut(s) 979, 1240, 1256
PspN4I GGNNCC 6 cut(s) 630, 703, 805, 906, 1095, 1175
PspPI GGNCC 2 cut(s) 702, 904
PsuI RGATCY 2 cut(s) 133, 1018
RruI TCGCGA 1 cut(s) 577
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 2 cut(s) 434, 935
SapI GCTCTTC 1 cut(s) 725
SaqAI TTAA 2 cut(s) 789, 881
Sau3AI GATC 3 cut(s) 133, 409, 1018
Sau96I GGNCC 2 cut(s) 702, 904
SchI GAGTC 6 cut(s) 63, 296, 473, 560, 566, 1177
ScrFI CCNGG 6 cut(s) 491, 536, 981, 1045, 1242, 1258
SduI GDGCHC 2 cut(s) 323, 1098
SfaNI GCATC 3 cut(s) 426, 532, 1132
SfoI GGCGCC 1 cut(s) 630
Sfr274I CTCGAG 1 cut(s) 440
SinI GGWCC 2 cut(s) 702, 904
SlaI CTCGAG 1 cut(s) 440
SmiMI CAYNNNNRTG 2 cut(s) 434, 935
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 3 cut(s) 785, 1065, 1193
SspDI GGCGCC 1 cut(s) 628
SspI AATATT 1 cut(s) 795
SspMI CTAG 2 cut(s) 800, 933
StyD4I CCNGG 6 cut(s) 489, 534, 979, 1043, 1240, 1256
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 2 cut(s) 339, 583
TaqI TCGA 4 cut(s) 67, 282, 441, 615
TaqII GACCGA 1 cut(s) 257
TasI AATT 3 cut(s) 785, 1065, 1193
TauI GCSGC 8 cut(s) 19, 22, 25, 44, 47, 50, 301, 364
TfiI GAWTC 3 cut(s) 311, 644, 1040
Tru1I TTAA 2 cut(s) 789, 881
Tru9I TTAA 2 cut(s) 789, 881
TscAI CASTG 1 cut(s) 1175
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 4 cut(s) 157, 220, 394, 405
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 3 cut(s) 26, 91, 884
TspRI CASTG 1 cut(s) 1175
VpaK11BI GGWCC 2 cut(s) 702, 904
XapI RAATTY 1 cut(s) 785
XceI RCATGY 1 cut(s) 940
XhoI CTCGAG 1 cut(s) 440
XspI CTAG 2 cut(s) 800, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.