AT2G40550

Mini-chromosome maintenance replisome factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
16934621 .. 16938272
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40550.1

Sequence Viewer

Length: 1770 bp
ATGGGAGGACCAGCTTACGATTGTCTGACCAACCCTTTAGGAGCCGTCCGATTCTCCTTCGTAAATGCTCTGTCTTCAGGCTACGATCCGGCTTCGTCTGTCGGAAAAGACTGGGGTGTCGTTGATTTGTTCCGTCACTACTTCTCCGACGAATCTGCTATCTCCCAGGTTCCAATTCTTGATTCGTCAAGTATTAAGTGGGTGCAACCCAAGACTCTTGTTCGGTTTCGTGGAATGATACAGGACATGCTTGGGAATGAATTCTATGCTGGTGCTTACAAGGATGATTCAACATGGAGAACAAACAAGTACAGTGATGTTTCACAGTTTCCTGAGGGTTCTTCCACTGAAATTCAAGTTTGGGAGCGTCGCTTGCTTTACTGTGTTCCAGTTCCGGGAAAAAACCAGTGGACTGAATGTTCTTCACAAGAGCTAAAAAACCGGTTTTTGGATCTAACTGGCCAAAACAGGGAAAAGCGTGTGAGGGTGGATGAAGAAATGACTGATTCCATGGACTCCAGTACTTTAGAAGCTGGGCGTAATGGTTCTCCTTTTAAGAAAATGAAAGTGGGGGAAGCTACTTCATCAGCTTCAGAATCTCAGGTTCCACAAACTTCTGGTATTCCGCCTGCTACAAGTGCAGATTCTCTGCCTTGTCTTGTCAAGATCTATGATTCTCCAGAGTCAGATTTGAAGCTAAATGATGTGGTTGAATTTCTTGGAGTGTTGACCTTCGATCCAATTGTTATGATGGATACAGATACACTTGATGAAAACTCTGATGCTCTTTCTGAAGCTGAATCTGTTCAGATGCCCTCTGGAAAGGTCCCACGCCTCCATTGTCTTATCCATAGAAAGCTTGAAACACAGCATTTCCTGCATGGTTCTTCGTTATTACCAGAGCCAAAATCCCCCCAAATATTCAAAGAGATAAGAGAGAGTTTGATGAAGTACCTTACCGGTCTACTTGGGAATGATCACATTGCCGCACAGTTCCTATTATTGCATCTCCTGTCAAAGGTGCATGGAAGAGTAGATAATGTTGCTGTTGGGAAGCTTTCTCTTAATCTCATACACCTTAATAAAGAAAGCATGTCTATCTTCGGTACCCAGCTCAGTGGTGCCCTCAAAAGCCTCCTACCGTTCACACAATCTATACCACTTACTATTGAGTATCTGAACACTGCCTCGTTCGGTCCCAAGAAAGACTATGGAATCAACAGATTGATGCCTGGAGTTCTACAAATTGCTGATGGTACGCACTTGATATTGGATGAAACAGAGTTGCAACCAGGCACCTTGAACTCTGTTGGAGTTGAGAATGCAAATCTGCTTAAAAACCTCTTGGAATGTCAGAAGGTTGAGTATGATTTCCAATATTACAAAATGGAAATGGCCACTGATGTTCAAATGCTCATATTCTCCGAGGGAAAGTCGAACATAATGCCCGCCGATTTGGTTCTACCTCTTCAACCTTCTCAAGTGAATTCATTGGAAGTCATCACACCAGAAACAGCTGAAACTTGGAGGTGCTACTTAGCTACTTGCAAATCATTATCACACTCCATTGGGCAAGAGTTGCAACAGGTGGTGGAGAATGATTTGGTTGCAGCTAGACAAACAGATCGTAGTTTAGGCAGCCAAGACTTGAGCAGATTGTTGACAATGGCTCGTATGATGTCTGTGAGTTATGGTGAGACTACGCTTTCACTAGAGCACTGGCAAATGGTGTTGGAACTAGAAAGACTTAGAAAGGAGAGGCTCAAGTAA

Protein Analysis

589

Amino Acids

65.75

Weight (kDa)

5.19

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCM_bind PF09739 44 - 588 6.7e-197 Mini-chromosome maintenance replisome factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
Acc65I GGTACC 1 cut(s) 1106
AccB1I GGYRCC 3 cut(s) 1106, 1121, 1295
AccI GTMKAC 1 cut(s) 964
AciI CCGC 3 cut(s) 626, 987, 1449
AclWI GGATC 3 cut(s) 80, 459, 731
AcoI YGGCCR 2 cut(s) 460, 1395
AcsI RAATTY 4 cut(s) 260, 351, 713, 1486
AcuI CTGAAG 3 cut(s) 60, 576, 813
AfaI GTAC 5 cut(s) 311, 523, 953, 1108, 1258
AfiI CCNNNNNNNGG 4 cut(s) 395, 448, 469, 1018
AgeI ACCGGT 2 cut(s) 441, 959
AgsI TTSAA 9 cut(s) 291, 356, 694, 713, 863, 925, 1303, 1409, 1472
AjnI CCWGG 3 cut(s) 165, 1231, 1291
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AloI GAACNNNNNNTCC 2 cut(s) 403, 435
Alw21I GWGCWC 1 cut(s) 1719
Alw26I GTCTC 1 cut(s) 1691
AlwI GGATC 3 cut(s) 80, 459, 731
AoxI GGCC 2 cut(s) 460, 1395
ApeKI GCWGC 2 cut(s) 1610, 1638
ApoI RAATTY 4 cut(s) 260, 351, 713, 1486
AsiGI ACCGGT 2 cut(s) 441, 959
Asp700I GAANNNNTTC 2 cut(s) 260, 804
Asp718I GGTACC 1 cut(s) 1106
AspS9I GGNCC 3 cut(s) 8, 826, 1196
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 1706
AvaII GGWCC 3 cut(s) 8, 826, 1196
AxyI CCTNAGG 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 1126
BalI TGGCCA 2 cut(s) 462, 1397
BanI GGYRCC 3 cut(s) 1106, 1121, 1295
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 1719
BbvI GCAGC 2 cut(s) 1622, 1650
BccI CCATC 2 cut(s) 745, 1247
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 4 cut(s) 137, 171, 1426, 1460
BciT130I CCWGG 3 cut(s) 167, 1233, 1293
BciVI GTATCC 1 cut(s) 748
BclI TGATCA 1 cut(s) 976
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 1691
BfaI CTAG 3 cut(s) 1614, 1712, 1739
BfuI GTATCC 1 cut(s) 748
BglII AGATCT 1 cut(s) 666
BisI GCNGC 3 cut(s) 987, 1611, 1639
BlsI GCNGC 3 cut(s) 988, 1612, 1640
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 4 cut(s) 167, 396, 1233, 1293
Bme18I GGWCC 3 cut(s) 8, 826, 1196
BmgT120I GGNCC 3 cut(s) 8, 826, 1196
BmiI GGNNCC 8 cut(s) 43, 171, 606, 828, 1108, 1123, 1198, 1297
BmrFI CCNGG 4 cut(s) 167, 396, 1233, 1293
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 4 cut(s) 772, 801, 1015, 1218
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 3 cut(s) 502, 663, 1254
BpuEI CTTGAG 3 cut(s) 1464, 1669, 1748
BpuMI CCSGG 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 165, 510, 1425
BsaWI WCCGGW 2 cut(s) 441, 959
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 4 cut(s) 395, 448, 469, 1018
Bse118I RCCGGY 2 cut(s) 441, 959
Bse1I ACTGG 6 cut(s) 116, 389, 406, 463, 519, 1724
Bse21I CCTNAGG 1 cut(s) 333
Bse3DI GCAATG 1 cut(s) 981
BseBI CCWGG 3 cut(s) 167, 1233, 1293
BseDI CCNNGG 3 cut(s) 165, 510, 1425
BseGI GGATG 3 cut(s) 289, 496, 1279
BseLI CCNNNNNNNGG 4 cut(s) 395, 448, 469, 1018
BseMI GCAATG 1 cut(s) 981
BseMII CTCAG 3 cut(s) 324, 614, 1129
BseNI ACTGG 6 cut(s) 116, 389, 406, 463, 519, 1724
BseSI GKGCMC 1 cut(s) 1126
BseXI GCAGC 2 cut(s) 1622, 1650
BseYI CCCAGC 2 cut(s) 533, 1110
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 2 cut(s) 462, 1397
BshNI GGYRCC 3 cut(s) 1106, 1121, 1295
BshTI ACCGGT 2 cut(s) 441, 959
BsiHKAI GWGCWC 1 cut(s) 1719
BsiSI CCGG 4 cut(s) 89, 395, 442, 960
BslFI GGGAC 2 cut(s) 812, 1182
BslI CCNNNNNNNGG 4 cut(s) 395, 448, 469, 1018
BsmAI GTCTC 1 cut(s) 1691
BsmFI GGGAC 2 cut(s) 812, 1182
BsmI GAATGC 1 cut(s) 1327
BsnI GGCC 2 cut(s) 462, 1397
Bsp1286I GDGCHC 2 cut(s) 1126, 1719
Bsp143I GATC 6 cut(s) 85, 451, 666, 736, 976, 1624
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 3 cut(s) 626, 987, 1449
BspANI GGCC 2 cut(s) 462, 1397
BspCNI CTCAG 3 cut(s) 325, 613, 1128
BspLI GGNNCC 8 cut(s) 43, 171, 606, 828, 1108, 1123, 1198, 1297
BspPI GGATC 3 cut(s) 80, 459, 731
BspT107I GGYRCC 3 cut(s) 1106, 1121, 1295
BsrDI GCAATG 1 cut(s) 981
BsrFI RCCGGY 2 cut(s) 441, 959
BsrI ACTGG 6 cut(s) 116, 389, 406, 463, 519, 1724
BssAI RCCGGY 2 cut(s) 441, 959
BssECI CCNNGG 3 cut(s) 165, 510, 1425
BssMI GATC 6 cut(s) 85, 451, 666, 736, 976, 1624
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 3 cut(s) 167, 1233, 1293
Bst4CI ACNGT 5 cut(s) 314, 327, 383, 993, 1143
Bst6I CTCTTC 2 cut(s) 1024, 1473
BstAPI GCANNNNNTGC 2 cut(s) 877, 1579
BstC8I GCNNGC 3 cut(s) 374, 630, 1449
BstDEI CTNAG 5 cut(s) 333, 600, 1115, 1537, 1748
BstDSI CCRYGG 1 cut(s) 510
BstENI CCTNNNNNAGG 1 cut(s) 1016
BstF5I GGATG 3 cut(s) 289, 496, 1279
BstKTI GATC 6 cut(s) 88, 454, 669, 739, 979, 1627
BstMAI GTCTC 1 cut(s) 1691
BstMBI GATC 6 cut(s) 85, 451, 666, 736, 976, 1624
BstMWI GCNNNNNNNGC 4 cut(s) 373, 638, 877, 1579
BstNI CCWGG 3 cut(s) 167, 1233, 1293
BstNSI RCATGY 2 cut(s) 250, 1096
BstSCI CCNGG 4 cut(s) 165, 394, 1231, 1291
BstSLI GKGCMC 1 cut(s) 1126
BstV1I GCAGC 2 cut(s) 1622, 1650
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 2 cut(s) 451, 666
BstXI CCANNNNNNTGG 1 cut(s) 1118
BstYI RGATCY 2 cut(s) 451, 666
Bsu36I CCTNAGG 1 cut(s) 333
BsuI GTATCC 1 cut(s) 748
BsuRI GGCC 2 cut(s) 462, 1397
BtgI CCRYGG 1 cut(s) 510
BtsCI GGATG 3 cut(s) 289, 496, 1279
BtsI GCAGTG 1 cut(s) 1182
BtsIMutI CAGTG 7 cut(s) 319, 345, 413, 1123, 1182, 1398, 1717
Cac8I GCNNGC 3 cut(s) 374, 630, 1449
Cfr10I RCCGGY 2 cut(s) 441, 959
Cfr13I GGNCC 3 cut(s) 8, 826, 1196
CseI GACGC 1 cut(s) 356
Csp6I GTAC 5 cut(s) 310, 522, 952, 1107, 1257
CspAI ACCGGT 2 cut(s) 441, 959
CviAII CATG 6 cut(s) 247, 294, 511, 881, 1025, 1093
CviQI GTAC 5 cut(s) 310, 522, 952, 1107, 1257
DdeI CTNAG 5 cut(s) 333, 600, 1115, 1537, 1748
DpnI GATC 6 cut(s) 87, 453, 668, 738, 978, 1626
DpnII GATC 6 cut(s) 85, 451, 666, 736, 976, 1624
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 2 cut(s) 460, 1395
Eam1104I CTCTTC 2 cut(s) 1024, 1473
EarI CTCTTC 2 cut(s) 1024, 1473
EciI GGCGGA 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 510
Eco47I GGWCC 3 cut(s) 8, 826, 1196
Eco57I CTGAAG 3 cut(s) 60, 576, 813
Eco81I CCTNAGG 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 1016
EcoO109I RGGNCCY 1 cut(s) 826
EcoRI GAATTC 2 cut(s) 260, 1486
EcoRII CCWGG 3 cut(s) 165, 1231, 1291
EcoT14I CCWWGG 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 6 cut(s) 250, 297, 514, 884, 1028, 1096
FaqI GGGAC 2 cut(s) 812, 1182
FatI CATG 6 cut(s) 246, 293, 510, 880, 1024, 1092
FauI CCCGC 1 cut(s) 1456
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 1 cut(s) 964
Fnu4HI GCNGC 3 cut(s) 987, 1611, 1639
FokI GGATG 3 cut(s) 296, 503, 1286
Fsp4HI GCNGC 3 cut(s) 987, 1611, 1639
FspBI CTAG 3 cut(s) 1614, 1712, 1739
GluI GCNGC 3 cut(s) 987, 1611, 1639
GsaI CCCAGC 2 cut(s) 537, 1114
GsuI CTGGAG 3 cut(s) 502, 663, 1254
HaeIII GGCC 2 cut(s) 462, 1397
HapII CCGG 4 cut(s) 89, 395, 442, 960
HgaI GACGC 1 cut(s) 356
Hin1II CATG 6 cut(s) 250, 297, 514, 884, 1028, 1096
HincII GTYRAC 2 cut(s) 729, 1662
HindII GTYRAC 2 cut(s) 729, 1662
HindIII AAGCTT 2 cut(s) 857, 1055
HpaII CCGG 4 cut(s) 89, 395, 442, 960
HphI GGTGA 1 cut(s) 1706
Hpy166II GTNNAC 5 cut(s) 411, 729, 965, 1146, 1662
Hpy188III TCNNGA 5 cut(s) 179, 332, 664, 680, 819
Hpy8I GTNNAC 5 cut(s) 411, 729, 965, 1146, 1662
Hpy99I CGWCG 2 cut(s) 152, 372
HpyAV CCTTC 4 cut(s) 67, 742, 1351, 1485
HpyCH4III ACNGT 5 cut(s) 314, 327, 383, 993, 1143
HpyF10VI GCNNNNNNNGC 4 cut(s) 373, 638, 877, 1579
HpyF3I CTNAG 5 cut(s) 333, 600, 1115, 1537, 1748
Hsp92II CATG 6 cut(s) 250, 297, 514, 884, 1028, 1096
KpnI GGTACC 1 cut(s) 1110
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 6 cut(s) 85, 451, 666, 736, 976, 1624
LmnI GCTCC 2 cut(s) 41, 364
Lsp1109I GCAGC 2 cut(s) 1622, 1650
LweI GCATC 4 cut(s) 772, 801, 1015, 1218
MaeI CTAG 3 cut(s) 1614, 1712, 1739
MaeIII GTNAC 1 cut(s) 134
MalI GATC 6 cut(s) 87, 453, 668, 738, 978, 1626
MboI GATC 6 cut(s) 85, 451, 666, 736, 976, 1624
MboII GAAGA 8 cut(s) 66, 333, 414, 506, 879, 1041, 1093, 1460
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 2 cut(s) 451, 666
MhlI GDGCHC 2 cut(s) 1126, 1719
MlsI TGGCCA 2 cut(s) 462, 1397
MluCI AATT 7 cut(s) 174, 260, 351, 713, 741, 1245, 1486
MluNI TGGCCA 2 cut(s) 462, 1397
MlyI GAGTC 3 cut(s) 208, 509, 692
MmeI TCCRAC 4 cut(s) 82, 171, 1291, 1713
Mox20I TGGCCA 2 cut(s) 462, 1397
MroXI GAANNNNTTC 2 cut(s) 260, 804
MscI TGGCCA 2 cut(s) 462, 1397
MseI TTAA 5 cut(s) 195, 555, 1065, 1080, 1335
Msp20I TGGCCA 2 cut(s) 462, 1397
MspA1I CMGCKG 1 cut(s) 1517
MspI CCGG 4 cut(s) 89, 395, 442, 960
MspR9I CCNGG 4 cut(s) 167, 396, 1233, 1293
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 1 cut(s) 1327
MvaI CCWGG 3 cut(s) 167, 1233, 1293
MwoI GCNNNNNNNGC 4 cut(s) 373, 638, 877, 1579
NciI CCSGG 1 cut(s) 396
NcoI CCATGG 1 cut(s) 510
NdeII GATC 6 cut(s) 85, 451, 666, 736, 976, 1624
NlaIII CATG 6 cut(s) 250, 297, 514, 884, 1028, 1096
NlaIV GGNNCC 8 cut(s) 43, 171, 606, 828, 1108, 1123, 1198, 1297
NmuCI GTSAC 1 cut(s) 134
NspI RCATGY 2 cut(s) 250, 1096
PctI GAATGC 1 cut(s) 1327
PdmI GAANNNNTTC 2 cut(s) 260, 804
PfoI TCCNGGA 1 cut(s) 394
PinAI ACCGGT 2 cut(s) 441, 959
PkrI GCNGC 3 cut(s) 988, 1612, 1640
PleI GAGTC 3 cut(s) 208, 509, 691
PpsI GAGTC 3 cut(s) 208, 509, 691
PpuMI RGGWCCY 1 cut(s) 826
Psp5II RGGWCCY 1 cut(s) 826
Psp6I CCWGG 3 cut(s) 165, 1231, 1291
PspFI CCCAGC 2 cut(s) 533, 1110
PspGI CCWGG 3 cut(s) 165, 1231, 1291
PspN4I GGNNCC 8 cut(s) 43, 171, 606, 828, 1108, 1123, 1198, 1297
PspPI GGNCC 3 cut(s) 8, 826, 1196
PspPPI RGGWCCY 1 cut(s) 826
PsuI RGATCY 2 cut(s) 451, 666
PvuII CAGCTG 1 cut(s) 1517
RsaI GTAC 5 cut(s) 311, 523, 953, 1108, 1258
RsaNI GTAC 5 cut(s) 310, 522, 952, 1107, 1257
SaqAI TTAA 5 cut(s) 195, 555, 1065, 1080, 1335
SatI GCNGC 3 cut(s) 987, 1611, 1639
Sau3AI GATC 6 cut(s) 85, 451, 666, 736, 976, 1624
Sau96I GGNCC 3 cut(s) 8, 826, 1196
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 3 cut(s) 208, 509, 692
ScrFI CCNGG 4 cut(s) 167, 396, 1233, 1293
SduI GDGCHC 2 cut(s) 1126, 1719
SfaNI GCATC 4 cut(s) 772, 801, 1015, 1218
SinI GGWCC 3 cut(s) 8, 826, 1196
SmlI CTYRAG 3 cut(s) 1479, 1648, 1763
SmoI CTYRAG 3 cut(s) 1479, 1648, 1763
Sse9I AATT 7 cut(s) 174, 260, 351, 713, 741, 1245, 1486
SsiI CCGC 3 cut(s) 626, 987, 1449
SspI AATATT 2 cut(s) 921, 1379
SspMI CTAG 3 cut(s) 1614, 1712, 1739
StyD4I CCNGG 4 cut(s) 165, 394, 1231, 1291
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 5 cut(s) 314, 327, 383, 993, 1143
TaqI TCGA 2 cut(s) 735, 1436
TaqII GACCGA 1 cut(s) 1184
TasI AATT 7 cut(s) 174, 260, 351, 713, 741, 1245, 1486
TatI WGTACW 2 cut(s) 309, 521
TauI GCSGC 1 cut(s) 989
Tru1I TTAA 5 cut(s) 195, 555, 1065, 1080, 1335
Tru9I TTAA 5 cut(s) 195, 555, 1065, 1080, 1335
TscAI CASTG 7 cut(s) 319, 352, 413, 1123, 1189, 1405, 1724
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 2 cut(s) 1610, 1638
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 8 cut(s) 273, 507, 573, 578, 786, 962, 1290, 1479
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 7 cut(s) 319, 352, 413, 1123, 1189, 1405, 1724
VpaK11BI GGWCC 3 cut(s) 8, 826, 1196
XagI CCTNNNNNAGG 1 cut(s) 1016
XapI RAATTY 4 cut(s) 260, 351, 713, 1486
XceI RCATGY 2 cut(s) 250, 1096
XmiI GTMKAC 1 cut(s) 964
XmnI GAANNNNTTC 2 cut(s) 260, 804
XspI CTAG 3 cut(s) 1614, 1712, 1739
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.