Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008710

Physical Location & Seq

Genomic Coordinates Forward (+)

48424796 .. 48425272

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0369900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTTCTTCAAGTTCTCAGTCCGCAAGATTGCCTCAGAAACCCTCTCACCTCACGACAAGCTCCACTCCCTCCTTTGATAAAATATCCACCTAACCCTAACCCTAACCCTAACCCTAACCCTAAACCTAACCATAAGCCTAACCCTAACCAGGCCATCCGTGCCCAGCCCAGCTGTCAAAAGAAGCGGAAGTCAAGCCGGTCAAACAACACCAACTCTCTGCCGGCAAGATCCGATGTCCAGAAAATTCATGTGGCCAATAACCAGCTGAGTGGTCAGGTCAAAATCTTGAAGCGCGGTGAGGGACTGACCAAACCTGCAGCTCCGCATCAGCCATCACCGGCTCCTAAAAAGAAACGCCCATCACAGAAAGTTCAAGAACTCAGGTTCTACGCGGGGTCGTGCACCTCTAGCGCCTCCCCGCCTCCAAGTTCGCTTCCTCTGCCATCGTTTCTTGCTAAGAAGAGAGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016043 GO:0022402 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM_bind

Protein Analysis

158

Amino Acids

17.26

Weight (kDa)

11.14

Isoelectric Point (pI)

81.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40550
fragaria_vesca	FvH4_7g25850 FvH4_7g25850 FvH4_7g25850 FvH4_7g25850 FvH4_7g25850
malus_domestica	MD01G1166300.v1.1 MD01G1183300.v1.1 MD07G1233000.v1.1
prunus_persica	Prupe.2G263500_v2.0.a1 Prupe.2G263500_v2.0.a1
pyrus_communis	pycom01g17990 pycom07g21080
rosa_chinensis	RchiOBHm_Chr1g0372121
rosa_laevigata	RLG00000026921
rosa_multiflora	Rmu_sc0001755.1_g000024
rosa_roxburghii	Rroxscaffold_4G00285230
rosa_rugosa	Rorug01G0369900
rosa_samantha	Rh1AG378300 Rh1BG341600 Rh1CG355000 Rh1DG372700
rosa_wichuraiana	Rw1G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccII	CGCG	2 cut(s)	297, 395
AciI	CCGC	6 cut(s)	23, 187, 297, 326, 395, 422
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	11, 292, 377
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	4 cut(s)	62, 174, 268, 323
AluI	AGCT	4 cut(s)	62, 174, 268, 323
Alw21I	GWGCWC	1 cut(s)	407
Alw44I	GTGCAC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	2 cut(s)	153, 255
ApaLI	GTGCAC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	246
AspLEI	GCGC	2 cut(s)	297, 416
AsuHPI	GGTGA	3 cut(s)	40, 311, 330
BaeGI	GKGCMC	2 cut(s)	166, 407
BalI	TGGCCA	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	407
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	4 cut(s)	164, 343, 370, 454
BciT130I	CCWGG	1 cut(s)	152
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	3 cut(s)	198, 223, 340
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	4 cut(s)	31, 49, 260, 397
BseSI	GKGCMC	2 cut(s)	166, 407
BseXI	GCAGC	1 cut(s)	332
BseYI	CCCAGC	2 cut(s)	165, 170
Bsh1236I	CGCG	2 cut(s)	297, 395
BshFI	GGCC	2 cut(s)	155, 257
BsiHKAI	GWGCWC	1 cut(s)	407
BsiSI	CCGG	3 cut(s)	199, 224, 341
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	155, 257
Bsp1286I	GDGCHC	2 cut(s)	166, 407
Bsp143I	GATC	1 cut(s)	230
BspACI	CCGC	6 cut(s)	23, 187, 297, 326, 395, 422
BspANI	GGCC	2 cut(s)	155, 257
BspCNI	CTCAG	4 cut(s)	30, 48, 261, 396
BspFNI	CGCG	2 cut(s)	297, 395
BspLI	GGNNCC	1 cut(s)	345
BspMAI	CTGCAG	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	225
BsrFI	RCCGGY	3 cut(s)	198, 223, 340
BssAI	RCCGGY	3 cut(s)	198, 223, 340
BssMI	GATC	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	5 cut(s)	17, 35, 269, 383, 459
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	2 cut(s)	297, 395
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	2 cut(s)	297, 416
BstKTI	GATC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 411, 442
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	318
BstSLI	GKGCMC	2 cut(s)	166, 407
BstUI	CGCG	2 cut(s)	297, 395
BstV1I	GCAGC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	155, 257
BtsCI	GGATG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	2 cut(s)	297, 416
Cfr10I	RCCGGY	3 cut(s)	198, 223, 340
CviAII	CATG	1 cut(s)	251
DdeI	CTNAG	5 cut(s)	17, 35, 269, 383, 459
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	254
FaiI	YATR	2 cut(s)	135, 252
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	1 cut(s)	250
FauI	CCCGC	2 cut(s)	388, 429
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	2 cut(s)	296, 415
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	2 cut(s)	169, 174
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	155, 257
HapII	CCGG	3 cut(s)	199, 224, 341
HhaI	GCGC	2 cut(s)	297, 416
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	2 cut(s)	295, 414
HinP1I	GCGC	2 cut(s)	295, 414
HpaII	CCGG	3 cut(s)	199, 224, 341
HphI	GGTGA	3 cut(s)	40, 311, 330
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	2 cut(s)	38, 235
Hpy188III	TCNNGA	4 cut(s)	54, 241, 289, 377
Hpy8I	GTNNAC	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	320, 405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 411, 442
HpyF3I	CTNAG	5 cut(s)	17, 35, 269, 383, 459
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	2 cut(s)	295, 414
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	230
LmnI	GCTCC	3 cut(s)	67, 328, 349
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	411
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MboII	GAAGA	1 cut(s)	475
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	2 cut(s)	166, 407
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	257
MnlI	CCTC	9 cut(s)	44, 54, 61, 81, 295, 418, 427, 435, 450
Mox20I	TGGCCA	1 cut(s)	257
MroNI	GCCGGC	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	475
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	2 cut(s)	174, 268
MspI	CCGG	3 cut(s)	199, 224, 341
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	2 cut(s)	297, 395
MwoI	GCNNNNNNNGC	3 cut(s)	161, 411, 442
NaeI	GCCGGC	1 cut(s)	225
NdeII	GATC	1 cut(s)	230
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	150
PspFI	CCCAGC	2 cut(s)	165, 170
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	345
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	230
PvuII	CAGCTG	2 cut(s)	174, 268
SaqAI	TTAA	1 cut(s)	475
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	2 cut(s)	166, 407
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	6 cut(s)	23, 187, 297, 326, 395, 422
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	150
TasI	AATT	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	475
Tru9I	TTAA	1 cut(s)	475
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	149
VneI	GTGCAC	1 cut(s)	403
XapI	RAATTY	1 cut(s)	246
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.