Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008710

Physical Location & Seq

Genomic Coordinates Forward (+)

28212028 .. 28216610

Gene Structure 4583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1183300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGTGCCTGATGTTGACAGGGATTCGCTTCCTTGTCTTATTAAGTTTAAAGAGGACAAGGATGAATCAGATGATTTCACAAATGGTTTTAGCAAAGACGAGCAACGGGTAATCGTTAGTGAAGGTGACAGCAGCCGAATACTGGGCATACAGGGCCTCCTTCATGTTCACCTCAGCGAACTGGCTTTGATATTTGTACCACGTCTCCACTGCTTTATTCACAGGAAACTTGCAGCTCACGACTTCCTTCCTTGTTCCCCTACAATCGAGCCAAAGCCCAACTTGGTGAAAGAGATCAGGGAATCTCTCTTAAGGCATCTTACCGCTGTTGTTGGTAATGATGGCATAGCTGCTAATTTCATGCTGTTGCATCTCTTGTCCAAGCTTGGCCTTGCTCTCAAGAATCTTTTACCTTTCACACAATGTATATCCCTAACAGTGGATTATCTCAAGTCTCAACATTGCTTCCCTTGCGCCAAGAAAGGATTAAGAGACCAGCAGGTAATGAGATTTCTAAGTCTGTACCTTAGTGTCAGTTTTGTTCTAGTTTTTAACTTTTCACATTGCTCCAGGCTGATAACCGGAGCCCTGCAGCTGGCTGAGGGTTCACACATGATATTTGATGAGACCCGGTTGGAAGCTGGCATTCTTAACTCTGTTGGGGTTGAAAATGCAAGATTGCTTAAAACTTTAATAGAGTCGCAAAAGGTGGAATATGATTTCAAGTTCTATAAACTGGACATGCCAGCAGACATCCAAATCCTTGTTCTTTCGGAAGGCAAATCAAACATTTTGCCAGCTGATGTAGTGTTACCTTTCCATCCTTCTTCAGTGGCTTCTGTTGACATTACTGCAGAGGCACTAGAGGCTTGGAGATGGTACTTGGCTTCTCTTAGATCATTGCCACATTCTATTGAGCCAGAAATACAGAAGGTGATAGAAAATGACTTGGTTGCGGCAAGGCAGGAAGATAGGACACTGGGAACCCAAGATTTCAGCAGATTGCTGACAATGGGTCGATTGATGTCTATGAGTTTCGGTGAAACCTCCCTATCATTAGAACACTGGCAGATGGTCAAGGAACTCGAGAGGTTACGAAGAGAGAGACTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016043 GO:0022402 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM_bind

Protein Analysis

372

Amino Acids

42.04

Weight (kDa)

6.13

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_bind	PF09739	60 - 129	6.7e-14	Mini-chromosome maintenance replisome factor
MCM_bind	PF09739	129 - 370	1.4e-77	Mini-chromosome maintenance replisome factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40550
fragaria_vesca	FvH4_7g25850 FvH4_7g25850 FvH4_7g25850 FvH4_7g25850 FvH4_7g25850
malus_domestica	MD01G1166300.v1.1 MD01G1183300.v1.1 MD07G1233000.v1.1
prunus_persica	Prupe.2G263500_v2.0.a1 Prupe.2G263500_v2.0.a1
pyrus_communis	pycom01g17990 pycom07g21080
rosa_chinensis	RchiOBHm_Chr1g0372121
rosa_laevigata	RLG00000026921
rosa_multiflora	Rmu_sc0001755.1_g000024
rosa_roxburghii	Rroxscaffold_4G00285230
rosa_rugosa	Rorug01G0369900
rosa_samantha	Rh1AG378300 Rh1BG341600 Rh1CG355000 Rh1DG372700
rosa_wichuraiana	Rw1G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	324, 956
AcuI	CTGAAG	1 cut(s)	813
AfaI	GTAC	3 cut(s)	198, 524, 881
AfiI	CCNNNNNNNGG	3 cut(s)	142, 439, 595
AflII	CTTAAG	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	668, 724
AhdI	GACNNNNNGTC	1 cut(s)	1014
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	569
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AluBI	AGCT	6 cut(s)	236, 350, 385, 595, 641, 800
AluI	AGCT	6 cut(s)	236, 350, 385, 595, 641, 800
Alw26I	GTCTC	5 cut(s)	209, 459, 486, 620, 1099
Ama87I	CYCGRG	1 cut(s)	1085
AoxI	GGCC	2 cut(s)	154, 388
ApeKI	GCWGC	4 cut(s)	132, 233, 350, 592
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	631
AsuHPI	GGTGA	5 cut(s)	137, 161, 298, 946, 1052
AvaI	CYCGRG	1 cut(s)	1085
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	589
BbvCI	CCTCAGC	2 cut(s)	173, 600
BbvI	GCAGC	4 cut(s)	144, 245, 337, 604
BccI	CCATC	4 cut(s)	335, 828, 870, 1066
BciT130I	CCWGG	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	631
BcoDI	GTCTC	5 cut(s)	209, 459, 486, 620, 1099
BfaI	CTAG	2 cut(s)	545, 863
BfmI	CTRYAG	2 cut(s)	590, 852
BfrI	CTTAAG	1 cut(s)	310
BfuAI	ACCTGC	1 cut(s)	490
BisI	GCNGC	5 cut(s)	133, 234, 351, 593, 957
BlsI	GCNGC	5 cut(s)	134, 235, 352, 594, 958
Bme1390I	CCNGG	2 cut(s)	571, 631
BmeRI	GACNNNNNGTC	1 cut(s)	1014
BmeT110I	CYCGRG	1 cut(s)	1085
BmgBI	CACGTC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	3 cut(s)	6, 586, 985
BmrFI	CCNGG	2 cut(s)	571, 631
BmrI	ACTGGG	2 cut(s)	152, 989
BmsI	GCATC	2 cut(s)	325, 379
BmuI	ACTGGG	2 cut(s)	152, 989
BplI	GAGNNNNNCTC	1 cut(s)	1092
BpmI	CTGGAG	1 cut(s)	553
Bpu10I	CCTNAGC	2 cut(s)	173, 600
BpuEI	CTTGAG	3 cut(s)	383, 434, 1094
BpuMI	CCSGG	1 cut(s)	631
BsaI	GGTCTC	2 cut(s)	486, 620
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 189, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 439, 595
Bse1I	ACTGG	5 cut(s)	147, 186, 741, 984, 1070
Bse3DI	GCAATG	3 cut(s)	460, 562, 899
BseBI	CCWGG	1 cut(s)	571
BseGI	GGATG	3 cut(s)	67, 753, 820
BseLI	CCNNNNNNNGG	3 cut(s)	142, 439, 595
BseMI	GCAATG	3 cut(s)	460, 562, 899
BseMII	CTCAG	2 cut(s)	187, 591
BseNI	ACTGG	5 cut(s)	147, 186, 741, 984, 1070
BseXI	GCAGC	4 cut(s)	144, 245, 337, 604
BshFI	GGCC	2 cut(s)	156, 390
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	1085
BsiSI	CCGG	2 cut(s)	582, 631
BslI	CCNNNNNNNGG	3 cut(s)	142, 439, 595
BsmAI	GTCTC	5 cut(s)	209, 459, 486, 620, 1099
BsmBI	CGTCTC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	2 cut(s)	156, 390
Bso31I	GGTCTC	2 cut(s)	486, 620
BsoBI	CYCGRG	1 cut(s)	1085
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	2 cut(s)	294, 896
BspACI	CCGC	2 cut(s)	324, 956
BspANI	GGCC	2 cut(s)	156, 390
BspCNI	CTCAG	2 cut(s)	186, 592
BspLI	GGNNCC	3 cut(s)	6, 586, 985
BspMAI	CTGCAG	2 cut(s)	594, 856
BspMI	ACCTGC	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	310
BspTNI	GGTCTC	2 cut(s)	486, 620
BsrDI	GCAATG	3 cut(s)	460, 562, 899
BsrI	ACTGG	5 cut(s)	147, 186, 741, 984, 1070
BssMI	GATC	2 cut(s)	294, 896
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	1093
BstAFI	CTTAAG	1 cut(s)	310
BstC8I	GCNNGC	4 cut(s)	597, 643, 747, 798
BstDEI	CTNAG	5 cut(s)	173, 515, 527, 600, 893
BstF5I	GGATG	3 cut(s)	67, 753, 820
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	2 cut(s)	297, 899
BstMAI	GTCTC	5 cut(s)	209, 459, 486, 620, 1099
BstMBI	GATC	2 cut(s)	294, 896
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 471, 866
BstNI	CCWGG	1 cut(s)	571
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	2 cut(s)	569, 629
BstSFI	CTRYAG	2 cut(s)	590, 852
BstV1I	GCAGC	4 cut(s)	144, 245, 337, 604
BsuRI	GGCC	2 cut(s)	156, 390
BtrI	CACGTC	1 cut(s)	203
BtsCI	GGATG	3 cut(s)	67, 753, 820
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	5 cut(s)	208, 444, 837, 977, 1063
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	4 cut(s)	597, 643, 747, 798
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	3 cut(s)	197, 523, 880
CviAII	CATG	4 cut(s)	164, 361, 613, 742
CviQI	GTAC	3 cut(s)	197, 523, 880
DdeI	CTNAG	5 cut(s)	173, 515, 527, 600, 893
DpnI	GATC	2 cut(s)	296, 898
DpnII	GATC	2 cut(s)	294, 896
DraI	TTTAAA	1 cut(s)	49
DriI	GACNNNNNGTC	1 cut(s)	1014
Eam1104I	CTCTTC	1 cut(s)	1093
Eam1105I	GACNNNNNGTC	1 cut(s)	1014
EarI	CTCTTC	1 cut(s)	1093
Eco24I	GRGCYC	1 cut(s)	589
Eco31I	GGTCTC	2 cut(s)	486, 620
Eco57I	CTGAAG	1 cut(s)	813
Eco88I	CYCGRG	1 cut(s)	1085
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	589
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	4 cut(s)	167, 364, 616, 745
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	4 cut(s)	163, 360, 612, 741
Fnu4HI	GCNGC	5 cut(s)	133, 234, 351, 593, 957
FokI	GGATG	3 cut(s)	74, 740, 807
FriOI	GRGCYC	1 cut(s)	589
Fsp4HI	GCNGC	5 cut(s)	133, 234, 351, 593, 957
FspBI	CTAG	2 cut(s)	545, 863
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	5 cut(s)	133, 234, 351, 593, 957
GsuI	CTGGAG	1 cut(s)	553
HaeIII	GGCC	2 cut(s)	156, 390
HapII	CCGG	2 cut(s)	582, 631
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	167, 364, 616, 745
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HincII	GTYRAC	2 cut(s)	16, 844
HindII	GTYRAC	2 cut(s)	16, 844
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	6 cut(s)	23, 65, 302, 403, 698, 1107
HpaII	CCGG	2 cut(s)	582, 631
HphI	GGTGA	5 cut(s)	137, 161, 298, 946, 1052
Hpy166II	GTNNAC	4 cut(s)	16, 169, 608, 844
Hpy188I	TCNGA	2 cut(s)	70, 775
Hpy188III	TCNNGA	3 cut(s)	239, 400, 1087
Hpy8I	GTNNAC	4 cut(s)	16, 169, 608, 844
HpyAV	CCTTC	6 cut(s)	116, 170, 257, 770, 834, 925
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	5 cut(s)	233, 370, 592, 674, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 471, 866
HpyF3I	CTNAG	5 cut(s)	173, 515, 527, 600, 893
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	4 cut(s)	167, 364, 616, 745
HspAI	GCGC	1 cut(s)	474
Kzo9I	GATC	2 cut(s)	294, 896
LmnI	GCTCC	2 cut(s)	572, 584
Lsp1109I	GCAGC	4 cut(s)	144, 245, 337, 604
LweI	GCATC	2 cut(s)	325, 379
MaeI	CTAG	2 cut(s)	545, 863
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	3 cut(s)	125, 810, 1092
MalI	GATC	2 cut(s)	296, 898
MboI	GATC	2 cut(s)	294, 896
MboII	GAAGA	3 cut(s)	819, 980, 1110
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	1 cut(s)	355
MlyI	GAGTC	2 cut(s)	707, 1101
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	8 cut(s)	46, 167, 182, 595, 850, 859, 1057, 1083
MseI	TTAA	8 cut(s)	42, 48, 311, 488, 552, 651, 684, 692
MspA1I	CMGCKG	3 cut(s)	326, 595, 800
MspCI	CTTAAG	1 cut(s)	310
MspI	CCGG	2 cut(s)	582, 631
MspR9I	CCNGG	2 cut(s)	571, 631
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	571
MwoI	GCNNNNNNNGC	3 cut(s)	153, 471, 866
NciI	CCSGG	1 cut(s)	631
NdeII	GATC	2 cut(s)	294, 896
NlaIII	CATG	4 cut(s)	167, 364, 616, 745
NlaIV	GGNNCC	3 cut(s)	6, 586, 985
NmuCI	GTSAC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	745
PaeR7I	CTCGAG	1 cut(s)	1085
PctI	GAATGC	1 cut(s)	645
PfeI	GAWTC	4 cut(s)	23, 65, 302, 403
PkrI	GCNGC	5 cut(s)	134, 235, 352, 594, 958
PleI	GAGTC	2 cut(s)	706, 1101
PpsI	GAGTC	2 cut(s)	706, 1101
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	3 cut(s)	6, 586, 985
PspPI	GGNCC	1 cut(s)	154
PstI	CTGCAG	2 cut(s)	594, 856
PvuII	CAGCTG	2 cut(s)	595, 800
RsaI	GTAC	3 cut(s)	198, 524, 881
RsaNI	GTAC	3 cut(s)	197, 523, 880
SaqAI	TTAA	8 cut(s)	42, 48, 311, 488, 552, 651, 684, 692
SatI	GCNGC	5 cut(s)	133, 234, 351, 593, 957
Sau3AI	GATC	2 cut(s)	294, 896
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	707, 1101
ScrFI	CCNGG	2 cut(s)	571, 631
SduI	GDGCHC	1 cut(s)	589
SfaNI	GCATC	2 cut(s)	325, 379
SfcI	CTRYAG	2 cut(s)	590, 852
Sfr274I	CTCGAG	1 cut(s)	1085
SlaI	CTCGAG	1 cut(s)	1085
SmlI	CTYRAG	5 cut(s)	310, 398, 449, 1085, 1109
SmoI	CTYRAG	5 cut(s)	310, 398, 449, 1085, 1109
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	2 cut(s)	324, 956
SspMI	CTAG	2 cut(s)	545, 863
StyD4I	CCNGG	2 cut(s)	569, 629
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	267, 1018, 1086
TasI	AATT	1 cut(s)	355
TauI	GCSGC	1 cut(s)	959
TfiI	GAWTC	4 cut(s)	23, 65, 302, 403
Tru1I	TTAA	8 cut(s)	42, 48, 311, 488, 552, 651, 684, 692
Tru9I	TTAA	8 cut(s)	42, 48, 311, 488, 552, 651, 684, 692
TscAI	CASTG	5 cut(s)	215, 444, 837, 984, 1070
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	4 cut(s)	132, 233, 350, 592
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	78, 152, 349
TspRI	CASTG	5 cut(s)	215, 444, 837, 984, 1070
Vha464I	CTTAAG	1 cut(s)	310
XceI	RCATGY	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	1085
XspI	CTAG	2 cut(s)	545, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.