Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008710

Physical Location & Seq

Genomic Coordinates Reverse (-)

6613410 .. 6617591

Gene Structure 4182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGGTGGGAGTAGCGTACGACTGCCTGGCCAACCCTCTCGGCGCCGTCCGAACAACTTTCGAAAAGGCCGTCTCTTCCGGATCCGACCCGGTCAACTTCTCCGGCCGCGACTGGGGCGCCGTCGACCTCTTCCGCCGCTTTCTCTTCGACGACGGCGGCCTCTCTCAGGTTCCGATTTTGAATTCTTCAACTATTAGATGGATTCAGCCCAATTCTCTGGTTCGATTTCGGGGGATGGTGCAAGATATGCTGGGAAATGAGCTCTATGTGGGTGCTTATAAGGATGGCTCGGTTTGGAGAACTAACAAGTTTGTGGATGTGGCTCAATACCCTATTGATTCTTGTTCCGAAACTCGGATATGGGAACGCCGTATGCTCTACTGTGTTCCGGTTCCGGGACTGAATTCGTGGACTGAACCTCCGGCAGTCGTGTATAGAAGTATGGATTCGACAACCCAACATGGAGAGAAGCGCCAGAGATTGGATGAATCCACAGATAACATGGATTTTGATGTCTCAGATGAGGGATTTCAAGGTTCTCCATCCCCCAAAAAACTGAAAGAGGATGGACATCCTTCCCAGTCGCAGGAGTTGAACGTTGAGGACACCAGCTCTAGTATGAGTATGCTGCCTGATGTTAACAGGGATTCACTTCCTTGTCTTGTTAAGATATATGATTGTCCAGAGTCTGACATGAAGCTAAACGAGGTTTTTGAGTTTGTTGGAGTGTTCACTTTTGATCCAGAGTTTAAAGTGGAAAATGATGATGATGAGTTTACAAATGGTTTTAGTGAAGATGTCTTGGTTCAGTTGCCCCCAATAAGCAAATTGGTGCCACGTCTCCATTGTCTTACTCAAAGGAAGCTTGCAGTTCATGACTTCCTTCTTAGCTCCCCCACAATGGAGGTAAAGCCCAACTTGGTGAAAGATATCAGAAATGCTCTGTTGAGGCATCTTACAGCTGTTCTTGGTAATGATGGCGTAGCTGCTGAATTCCTGCTCTTGCATCTTTTGTCCACGGTGTATTCTAGAGTTGGCACTGTTGCTGTGGGGAAGCTTTCTCTAAATCTCAATTGTTTCAACAAAGAAAGTGTGCCTGTGTTTGGCCCTCGGCTTCTCCTTGCTATCAAGAATCTTTTACCTTTCACACACTGTATATCTCTAACAGTGGATTATCTTAACACTGCTTCTCTTGCGCCAAAAAAGGATTATGAGACAAACAGACTGATTACTGGAGCTCTGCAGCTGGCTGAGGGTTCACACTTGGTCTTTGATGAGACCCAGTTGGAAGCTGGGACTCTCAACTCTGTTGGGGTTGAAAATGCAAGATTGCTTAAAACTCTAATGGAAATGCAAAAGGTGGAATATGATTTTCAGTACTATAAATTGGACATGGACGCTGATGTCCAATTGCTTGTTCTTTCTGAAGGCAAATCAAACATCTTACCAGCTGACATAGTTTTACCTTTCCAACCCTCTTCAGTGGATTCCTTTGAAGCCACTGCAGAAGCACTAGAGGCTTGGAGATCGTACTTGGCTACTATTAGATCATTGCCCCATTCTATAGAGCCAGAAATACAGAAGGTGATAGAAAATGACTTGGTTGAAGCAAAGCAAGCAGATAGGAGTATAGGCACCCAAGACTTCAGCAGATTGCTGACAATGGGTCGACTGTTGTCTATGAGTTTCAGTGAAACCAGCCTATCATTGGAACATTGGCAGATGGTCAAGGAACTGGAGAGGTTAAGAAGAGAAAGGATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016043 GO:0022402 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MCM_bind

Protein Analysis

588

Amino Acids

66.1

Weight (kDa)

4.94

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_bind	PF09739	44 - 587	1.4e-191	Mini-chromosome maintenance replisome factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40550
fragaria_vesca	FvH4_7g25850 FvH4_7g25850 FvH4_7g25850 FvH4_7g25850 FvH4_7g25850
malus_domestica	MD01G1166300.v1.1 MD01G1183300.v1.1 MD07G1233000.v1.1
prunus_persica	Prupe.2G263500_v2.0.a1 Prupe.2G263500_v2.0.a1
pyrus_communis	pycom01g17990 pycom07g21080
rosa_chinensis	RchiOBHm_Chr1g0372121
rosa_laevigata	RLG00000026921
rosa_multiflora	Rmu_sc0001755.1_g000024
rosa_roxburghii	Rroxscaffold_4G00285230
rosa_rugosa	Rorug01G0369900
rosa_samantha	Rh1AG378300 Rh1BG341600 Rh1CG355000 Rh1DG372700
rosa_wichuraiana	Rw1G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AasI	GACNNNNNNGTC	1 cut(s)	1403
AccB1I	GGYRCC	4 cut(s)	41, 116, 832, 1634
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccI	GTMKAC	2 cut(s)	123, 1669
AccII	CGCG	1 cut(s)	108
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	4 cut(s)	106, 133, 136, 156
AclI	AACGTT	1 cut(s)	597
AclWI	GGATC	4 cut(s)	75, 88, 734, 1766
AcoI	YGGCCR	2 cut(s)	27, 103
AcsI	RAATTY	3 cut(s)	181, 403, 992
AcuI	CTGAAG	3 cut(s)	1446, 1464, 1630
AcyI	GRCGYC	2 cut(s)	42, 117
AfaI	GTAC	3 cut(s)	17, 1379, 1532
AfiI	CCNNNNNNNGG	9 cut(s)	112, 166, 354, 395, 481, 586, 901, 1103, 1708
AgsI	TTSAA	8 cut(s)	181, 189, 533, 595, 1081, 1319, 1496, 1607
AhdI	GACNNNNNGTC	1 cut(s)	1665
AjiI	CACGTC	1 cut(s)	839
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	1401, 1433
Alw21I	GWGCWC	2 cut(s)	264, 1240
Alw26I	GTCTC	5 cut(s)	76, 520, 845, 1208, 1271
AlwI	GGATC	4 cut(s)	75, 88, 734, 1766
AlwNI	CAGNNNCTG	1 cut(s)	689
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	5 cut(s)	27, 66, 103, 157, 1105
ApeKI	GCWGC	3 cut(s)	628, 986, 1243
ApoI	RAATTY	3 cut(s)	181, 403, 992
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AspLEI	GCGC	4 cut(s)	44, 119, 474, 1198
AspS9I	GGNCC	1 cut(s)	1106
AsuC2I	CCSGG	2 cut(s)	89, 396
AsuHPI	GGTGA	2 cut(s)	934, 1597
AsuII	TTCGAA	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	29
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	4 cut(s)	41, 116, 832, 1634
BanII	GRGCYC	2 cut(s)	264, 1240
Bbv12I	GWGCWC	2 cut(s)	264, 1240
BbvCI	CCTCAGC	1 cut(s)	1251
BbvI	GCAGC	3 cut(s)	615, 973, 1255
BccI	CCATC	7 cut(s)	192, 229, 278, 550, 560, 971, 1717
BceAI	ACGGC	5 cut(s)	29, 53, 104, 169, 354
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	2 cut(s)	89, 396
BcoDI	GTCTC	5 cut(s)	76, 520, 845, 1208, 1271
BfaI	CTAG	3 cut(s)	615, 1029, 1514
BfmI	CTRYAG	3 cut(s)	1241, 1503, 1563
BfoI	RGCGCY	3 cut(s)	45, 120, 475
BisI	GCNGC	6 cut(s)	106, 136, 157, 629, 987, 1244
BlsI	GCNGC	6 cut(s)	107, 137, 158, 630, 988, 1245
BmcAI	AGTACT	1 cut(s)	1379
Bme1390I	CCNGG	3 cut(s)	26, 89, 396
BmeRI	GACNNNNNGTC	1 cut(s)	1665
BmgBI	CACGTC	1 cut(s)	839
BmgT120I	GGNCC	1 cut(s)	1106
BmiI	GGNNCC	7 cut(s)	43, 82, 118, 171, 393, 834, 1636
BmrFI	CCNGG	3 cut(s)	26, 89, 396
BmrI	ACTGGG	3 cut(s)	121, 574, 1276
BmsI	GCATC	2 cut(s)	961, 1015
BmuI	ACTGGG	3 cut(s)	121, 574, 1276
BoxI	GACNNNNGTC	1 cut(s)	1675
BpmI	CTGGAG	2 cut(s)	1254, 1757
Bpu10I	CCTNAGC	1 cut(s)	1251
Bpu14I	TTCGAA	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	89, 396
BsaBI	GATNNNNATC	1 cut(s)	570
BsaHI	GRCGYC	2 cut(s)	42, 117
BsaI	GGTCTC	1 cut(s)	1271
BsaJI	CCNNGG	2 cut(s)	1017, 1109
BsaWI	WCCGGW	2 cut(s)	77, 388
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	9 cut(s)	112, 166, 354, 395, 481, 586, 901, 1103, 1708
Bse1I	ACTGG	5 cut(s)	116, 580, 1237, 1282, 1740
Bse3DI	GCAATG	1 cut(s)	1550
Bse8I	GATNNNNATC	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	1017, 1109
BseGI	GGATG	7 cut(s)	240, 289, 322, 490, 542, 571, 571
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	9 cut(s)	112, 166, 354, 395, 481, 586, 901, 1103, 1708
BseMI	GCAATG	1 cut(s)	1550
BseMII	CTCAG	3 cut(s)	179, 531, 1242
BseNI	ACTGG	5 cut(s)	116, 580, 1237, 1282, 1740
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	615, 973, 1255
BseYI	CCCAGC	2 cut(s)	250, 1292
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	5 cut(s)	29, 68, 105, 159, 1107
BshNI	GGYRCC	4 cut(s)	41, 116, 832, 1634
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	264, 1240
BsiSI	CCGG	6 cut(s)	78, 89, 102, 389, 395, 422
BsiWI	CGTACG	1 cut(s)	15
BslFI	GGGAC	2 cut(s)	411, 1309
BslI	CCNNNNNNNGG	9 cut(s)	112, 166, 354, 395, 481, 586, 901, 1103, 1708
BsmAI	GTCTC	5 cut(s)	76, 520, 845, 1208, 1271
BsmBI	CGTCTC	2 cut(s)	76, 845
BsmFI	GGGAC	2 cut(s)	411, 1309
BsnI	GGCC	5 cut(s)	29, 68, 105, 159, 1107
Bso31I	GGTCTC	1 cut(s)	1271
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	264, 1240
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	5 cut(s)	80, 739, 1526, 1547, 1758
BspACI	CCGC	4 cut(s)	106, 133, 136, 156
BspANI	GGCC	5 cut(s)	29, 68, 105, 159, 1107
BspCNI	CTCAG	3 cut(s)	178, 530, 1243
BspEI	TCCGGA	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	7 cut(s)	43, 82, 118, 171, 393, 834, 1636
BspMAI	CTGCAG	2 cut(s)	1245, 1507
BspPI	GGATC	4 cut(s)	75, 88, 734, 1766
BspT104I	TTCGAA	1 cut(s)	60
BspT107I	GGYRCC	4 cut(s)	41, 116, 832, 1634
BspTNI	GGTCTC	1 cut(s)	1271
BsrDI	GCAATG	1 cut(s)	1550
BsrI	ACTGG	5 cut(s)	116, 580, 1237, 1282, 1740
BssECI	CCNNGG	2 cut(s)	1017, 1109
BssMI	GATC	5 cut(s)	80, 739, 1526, 1547, 1758
BssNI	GRCGYC	2 cut(s)	42, 117
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	6 cut(s)	383, 1021, 1042, 1154, 1168, 1674
Bst6I	CTCTTC	5 cut(s)	79, 134, 149, 1483, 1744
BstACI	GRCGYC	2 cut(s)	42, 117
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	867, 1248, 1617
BstDEI	CTNAG	4 cut(s)	165, 517, 887, 1251
BstDSI	CCRYGG	1 cut(s)	1017
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	7 cut(s)	240, 289, 322, 490, 542, 571, 571
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	3 cut(s)	45, 120, 475
BstHHI	GCGC	4 cut(s)	44, 119, 474, 1198
BstKTI	GATC	5 cut(s)	83, 742, 1529, 1550, 1761
BstMAI	GTCTC	5 cut(s)	76, 520, 845, 1208, 1271
BstMBI	GATC	5 cut(s)	80, 739, 1526, 1547, 1758
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 247, 1193, 1517, 1616
BstNI	CCWGG	1 cut(s)	26
BstPAI	GACNNNNGTC	1 cut(s)	1675
BstSCI	CCNGG	3 cut(s)	24, 87, 394
BstSFI	CTRYAG	3 cut(s)	1241, 1503, 1563
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	615, 973, 1255
BstX2I	RGATCY	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	80
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	5 cut(s)	29, 68, 105, 159, 1107
BtgI	CCRYGG	1 cut(s)	1017
BtrI	CACGTC	1 cut(s)	839
BtsCI	GGATG	7 cut(s)	240, 289, 322, 490, 542, 571, 571
BtsI	GCAGTG	2 cut(s)	1182, 1500
BtsIMutI	CAGTG	7 cut(s)	1038, 1150, 1173, 1182, 1488, 1500, 1696
Cac8I	GCNNGC	3 cut(s)	867, 1248, 1617
CaiI	CAGNNNCTG	1 cut(s)	689
CciI	TCATGA	1 cut(s)	874
CfoI	GCGC	4 cut(s)	44, 119, 474, 1198
Cfr13I	GGNCC	1 cut(s)	1106
CseI	GACGC	1 cut(s)	1406
Csp6I	GTAC	3 cut(s)	16, 1378, 1531
CviAII	CATG	5 cut(s)	461, 502, 694, 875, 1393
CviQI	GTAC	3 cut(s)	16, 1378, 1531
DdeI	CTNAG	4 cut(s)	165, 517, 887, 1251
DinI	GGCGCC	2 cut(s)	43, 118
DpnI	GATC	5 cut(s)	82, 741, 1528, 1549, 1760
DpnII	GATC	5 cut(s)	80, 739, 1526, 1547, 1758
DraI	TTTAAA	1 cut(s)	751
DrdI	GACNNNNNNGTC	1 cut(s)	1403
DriI	GACNNNNNGTC	1 cut(s)	1665
DseDI	GACNNNNNNGTC	1 cut(s)	1403
EaeI	YGGCCR	2 cut(s)	27, 103
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	5 cut(s)	79, 134, 149, 1483, 1744
Eam1105I	GACNNNNNGTC	1 cut(s)	1665
EarI	CTCTTC	5 cut(s)	79, 134, 149, 1483, 1744
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	2 cut(s)	262, 1238
EclXI	CGGCCG	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	264, 1240
Eco31I	GGTCTC	1 cut(s)	1271
Eco32I	GATATC	1 cut(s)	931
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	2 cut(s)	262, 1238
Eco57I	CTGAAG	3 cut(s)	1446, 1464, 1630
EcoICRI	GAGCTC	2 cut(s)	262, 1238
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoRI	GAATTC	3 cut(s)	181, 403, 992
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	931
EcoT38I	GRGCYC	2 cut(s)	264, 1240
EgeI	GGCGCC	2 cut(s)	43, 118
EheI	GGCGCC	2 cut(s)	43, 118
Esp3I	CGTCTC	2 cut(s)	76, 845
FaeI	CATG	5 cut(s)	464, 505, 697, 878, 1396
FalI	AAGNNNNNCTT	2 cut(s)	902, 934
FaqI	GGGAC	2 cut(s)	411, 1309
FatI	CATG	5 cut(s)	460, 501, 693, 874, 1392
FblI	GTMKAC	2 cut(s)	123, 1669
Fnu4HI	GCNGC	6 cut(s)	106, 136, 157, 629, 987, 1244
FokI	GGATG	7 cut(s)	247, 296, 329, 497, 529, 558, 578
FriOI	GRGCYC	2 cut(s)	264, 1240
Fsp4HI	GCNGC	6 cut(s)	106, 136, 157, 629, 987, 1244
FspBI	CTAG	3 cut(s)	615, 1029, 1514
GlaI	GCGC	4 cut(s)	43, 118, 473, 1197
GluI	GCNGC	6 cut(s)	106, 136, 157, 629, 987, 1244
GsaI	CCCAGC	2 cut(s)	254, 1296
GsuI	CTGGAG	2 cut(s)	1254, 1757
HaeII	RGCGCY	3 cut(s)	45, 120, 475
HaeIII	GGCC	5 cut(s)	29, 68, 105, 159, 1107
HapII	CCGG	6 cut(s)	78, 89, 102, 389, 395, 422
HgaI	GACGC	1 cut(s)	1406
HhaI	GCGC	4 cut(s)	44, 119, 474, 1198
Hin1I	GRCGYC	2 cut(s)	42, 117
Hin1II	CATG	5 cut(s)	464, 505, 697, 878, 1396
Hin6I	GCGC	4 cut(s)	42, 117, 472, 1196
HinP1I	GCGC	4 cut(s)	42, 117, 472, 1196
HincII	GTYRAC	4 cut(s)	94, 124, 640, 1670
HindII	GTYRAC	4 cut(s)	94, 124, 640, 1670
HindIII	AAGCTT	2 cut(s)	863, 1055
HinfI	GANTC	9 cut(s)	202, 338, 446, 488, 647, 686, 1132, 1297, 1487
HpaI	GTTAAC	1 cut(s)	640
HpaII	CCGG	6 cut(s)	78, 89, 102, 389, 395, 422
HphI	GGTGA	2 cut(s)	934, 1597
Hpy166II	GTNNAC	9 cut(s)	94, 124, 411, 640, 732, 777, 1017, 1259, 1670
Hpy188I	TCNGA	9 cut(s)	50, 85, 174, 349, 357, 520, 691, 935, 1426
Hpy188III	TCNNGA	6 cut(s)	78, 683, 743, 875, 1029, 1129
Hpy8I	GTNNAC	9 cut(s)	94, 124, 411, 640, 732, 777, 1017, 1259, 1670
Hpy99I	CGWCG	3 cut(s)	125, 152, 155
HpyAV	CCTTC	4 cut(s)	585, 893, 1421, 1576
HpyCH4III	ACNGT	6 cut(s)	383, 1021, 1042, 1154, 1168, 1674
HpyCH4IV	ACGT	2 cut(s)	597, 838
HpyCH4V	TGCA	7 cut(s)	241, 869, 1006, 1243, 1325, 1354, 1505
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 247, 1193, 1517, 1616
HpyF3I	CTNAG	4 cut(s)	165, 517, 887, 1251
HpySE526I	ACGT	2 cut(s)	597, 838
Hsp92I	GRCGYC	2 cut(s)	42, 117
Hsp92II	CATG	5 cut(s)	464, 505, 697, 878, 1396
HspAI	GCGC	4 cut(s)	42, 117, 472, 1196
KasI	GGCGCC	2 cut(s)	41, 116
Kpn2I	TCCGGA	1 cut(s)	77
KspAI	GTTAAC	1 cut(s)	640
Kzo9I	GATC	5 cut(s)	80, 739, 1526, 1547, 1758
LmnI	GCTCC	2 cut(s)	896, 1235
Lsp1109I	GCAGC	3 cut(s)	615, 973, 1255
LweI	GCATC	2 cut(s)	961, 1015
MaeI	CTAG	3 cut(s)	615, 1029, 1514
MaeII	ACGT	2 cut(s)	597, 838
MalI	GATC	5 cut(s)	82, 741, 1528, 1549, 1760
MboI	GATC	5 cut(s)	80, 739, 1526, 1547, 1758
MboII	GAAGA	7 cut(s)	66, 121, 136, 177, 806, 1470, 1761
MfeI	CAATTG	2 cut(s)	1072, 1409
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	264, 1240
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	8 cut(s)	181, 211, 403, 827, 992, 1072, 1385, 1409
MluNI	TGGCCA	1 cut(s)	29
Mly113I	GGCGCC	2 cut(s)	42, 117
MlyI	GAGTC	2 cut(s)	695, 1291
MmeI	TCCRAC	4 cut(s)	108, 703, 1266, 1495
Mox20I	TGGCCA	1 cut(s)	29
MroI	TCCGGA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	6 cut(s)	639, 666, 750, 1179, 1335, 1745
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	3 cut(s)	962, 1246, 1451
MspI	CCGG	6 cut(s)	78, 89, 102, 389, 395, 422
MspR9I	CCNGG	3 cut(s)	26, 89, 396
MunI	CAATTG	2 cut(s)	1072, 1409
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	5 cut(s)	114, 247, 1193, 1517, 1616
NarI	GGCGCC	2 cut(s)	42, 117
NciI	CCSGG	2 cut(s)	89, 396
NdeII	GATC	5 cut(s)	80, 739, 1526, 1547, 1758
NlaIII	CATG	5 cut(s)	464, 505, 697, 878, 1396
NlaIV	GGNNCC	7 cut(s)	43, 82, 118, 171, 393, 834, 1636
NmeAIII	GCCGAG	2 cut(s)	18, 1090
NspV	TTCGAA	1 cut(s)	60
PagI	TCATGA	1 cut(s)	874
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	7 cut(s)	202, 338, 446, 488, 647, 1132, 1487
Pfl23II	CGTACG	1 cut(s)	15
PflFI	GACNNNGTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	481
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	6 cut(s)	107, 137, 158, 630, 988, 1245
PleI	GAGTC	2 cut(s)	694, 1291
PluTI	GGCGCC	2 cut(s)	45, 120
PpsI	GAGTC	2 cut(s)	694, 1291
PshAI	GACNNNNGTC	1 cut(s)	1675
PsiI	TTATAA	1 cut(s)	279
Psp124BI	GAGCTC	2 cut(s)	264, 1240
Psp1406I	AACGTT	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	2 cut(s)	250, 1292
PspGI	CCWGG	1 cut(s)	24
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	7 cut(s)	43, 82, 118, 171, 393, 834, 1636
PspPI	GGNCC	1 cut(s)	1106
PstI	CTGCAG	2 cut(s)	1245, 1507
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	89
PvuII	CAGCTG	3 cut(s)	962, 1246, 1451
RsaI	GTAC	3 cut(s)	17, 1379, 1532
RsaNI	GTAC	3 cut(s)	16, 1378, 1531
SacI	GAGCTC	2 cut(s)	264, 1240
SalI	GTCGAC	2 cut(s)	122, 1668
SaqAI	TTAA	6 cut(s)	639, 666, 750, 1179, 1335, 1745
SatI	GCNGC	6 cut(s)	106, 136, 157, 629, 987, 1244
Sau3AI	GATC	5 cut(s)	80, 739, 1526, 1547, 1758
Sau96I	GGNCC	1 cut(s)	1106
ScaI	AGTACT	1 cut(s)	1379
SchI	GAGTC	2 cut(s)	695, 1291
ScrFI	CCNGG	3 cut(s)	26, 89, 396
SduI	GDGCHC	2 cut(s)	264, 1240
SfaNI	GCATC	2 cut(s)	961, 1015
SfcI	CTRYAG	3 cut(s)	1241, 1503, 1563
SfoI	GGCGCC	2 cut(s)	43, 118
SfuI	TTCGAA	1 cut(s)	60
Sse9I	AATT	8 cut(s)	181, 211, 403, 827, 992, 1072, 1385, 1409
SsiI	CCGC	4 cut(s)	106, 133, 136, 156
SspDI	GGCGCC	2 cut(s)	41, 116
SspMI	CTAG	3 cut(s)	615, 1029, 1514
SstI	GAGCTC	2 cut(s)	264, 1240
StyD4I	CCNGG	3 cut(s)	24, 87, 394
TaaI	ACNGT	6 cut(s)	383, 1021, 1042, 1154, 1168, 1674
TaiI	ACGT	2 cut(s)	600, 841
TaqI	TCGA	6 cut(s)	60, 123, 147, 223, 449, 1669
TasI	AATT	8 cut(s)	181, 211, 403, 827, 992, 1072, 1385, 1409
TatI	WGTACW	1 cut(s)	1377
TauI	GCSGC	3 cut(s)	108, 138, 159
TfiI	GAWTC	7 cut(s)	202, 338, 446, 488, 647, 1132, 1487
Tru1I	TTAA	6 cut(s)	639, 666, 750, 1179, 1335, 1745
Tru9I	TTAA	6 cut(s)	639, 666, 750, 1179, 1335, 1745
TscAI	CASTG	7 cut(s)	1045, 1157, 1173, 1189, 1488, 1507, 1696
TseI	GCWGC	3 cut(s)	628, 986, 1243
TspDTI	ATGAA	3 cut(s)	501, 710, 863
TspRI	CASTG	7 cut(s)	1045, 1157, 1173, 1189, 1488, 1507, 1696
Tth111I	GACNNNGTC	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	3 cut(s)	181, 403, 992
XbaI	TCTAGA	1 cut(s)	1028
XcmI	CCANNNNNNNNNTGG	3 cut(s)	499, 1289, 1705
XmiI	GTMKAC	2 cut(s)	123, 1669
XspI	CTAG	3 cut(s)	615, 1029, 1514
ZrmI	AGTACT	1 cut(s)	1379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.