AT2G40570

initiator tRNA phosphoribosyl transferase family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
16940822 .. 16943515
2694 bp
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UTR
Exon/CDS
Intron
AT2G40570.2

Sequence Viewer

Length: 1566 bp
ATGGGTGCAAAATCAGAAGAGCCGATGATGACAACAAGAGATAGTATATACAGAGCTGCAAGGAATATAAAACGACGAGACAACAGTCTCTACAACGCTCTTCGATCTATCTACCAAGACTCCATCTTCGTCCACGAGATCTCTCTGCTTTGGCCTAAACTTCCTCTCGTTGCAAACCTTCGTTGTGGTCTCTGGTACTCTGAAAAGTTCGACGCCACTTGCTACTTCAAATCCACCGATGGTCATACCAATAATTTGTCCTTTAACACTTCTCGTCTCAATCTCCATCTTCCTCTTCTCGCTGGAGAAAAAGGAGGATGCATCATTATTGATTCTACTCGTAAAGGAAAGCGTTTTCCGGATAGCATGTCGAAAACGATACCTATGTGGTCTTGTGTAGTGAACCGTTCAATATTTAATCATTGGAACAGATTATGTAACATTGATGCAGGTTTGACTAGTGATGATGATGGTGATAACATCAGGAAATTGTTAGATAAATGGGATTGTTCGTTACATCTACCACTATGGGTTTCAAATACTGAGAGGGCTTCTATTGAAGCTAGATTGGATGAGTGGACAAGAGAGTTAGATGAGAGTGGAGCTGATATAGCTTCTCTAGCTTCATGTTTGAGAAAACCTTTGCGTCCTCTTTGGGTTTCACAGAAAACTGTTATATGGTTGAATGAAGTACCTGAGCATGATTCATGGGATTTCACACCTCTTATCCTTGTCTCAGCTTCTGCTTCTGGTGAACTTCAAAACAGAACTAGTTCAGAGTTTAGTTGGAATTATATTCCAGGGGCTGGTGATGATGAAGAGAGTTGGGCTAGAGGTTTATCCCCAAATGTTTTTTGGACACATGTTGATGATTTGATTCACTCAGGGCCTGACTTGTGTAACCAGAAAGTTGCAGAGATTGTTGAAAACGATAGAGTGTATCGAGCGCATAGAGGTCAAGAAGCTCCTCAGGTTGTTGTCAAATGCTCAAAATCTAATGGTGGAGTCAATCACGCTAAGAGTGATGAAATCTTATGTCTTAGTGCACAAATACCGAAAGTTGATGAAGAAAGATTAGTATTTTGGTTGTCATCAACGAATCTTGCTGTTGGTGCATCACAAGTAGCTTGTAAGGAGACATCAATTGACTGCATATTAAATTGTGATCAAAATCCTATCTCAGTCCCTGTATCATATCTTGAAGAGCATTTGCATCTACCCATGAAGGGTTCAAAATTTGATAGATTTTCTATATCAAGAAATCTTCCTCCCGCGGTTAATTTTGCTAAGCTCAAGATGAGTTCAGGGAAGAAAGTCTTGGTTTGTTGTCAAGATGGGGAAGATATCAGTATATGTGTTTGCTTGGCCATCTTGATGTCATTATTCAATGAAGAAGGGGCCTTTGATGGTGGAAAATCCTTTGAAGAGAAGAGTATAACAAAAATGGATATGCGACGGATGCTAATATTTATATGCAAATACGCGGTGAATGCTCGACCATCTAGAGGCAATCTAAAGCAAGTTTTTGGTTTTCTCTCGTCTCACCGCGAAAATTCAGACGAGTGA

Protein Analysis

521

Amino Acids

58.71

Weight (kDa)

6.15

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rit1_C PF17184 23 - 309 2.4e-97 Rit1 N-terminal domain
Init_tRNA_PT PF04179 403 - 452 8.3e-07 Rit1 DUSP-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 440
AccB7I CCANNNNNTGG 1 cut(s) 806
AccII CGCG 3 cut(s) 1274, 1484, 1548
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 4 cut(s) 1272, 1274, 1484, 1546
AcoI YGGCCR 1 cut(s) 1365
AcsI RAATTY 2 cut(s) 1235, 1552
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 2 cut(s) 197, 693
AfiI CCNNNNNNNGG 3 cut(s) 806, 1226, 1505
AflIII ACRYGT 1 cut(s) 862
AhlI ACTAGT 2 cut(s) 458, 770
AjnI CCWGG 1 cut(s) 799
AjuI GAANNNNNNNTTGG 2 cut(s) 1301, 1333
AluBI AGCT 9 cut(s) 56, 563, 605, 614, 623, 740, 965, 1127, 1291
AluI AGCT 9 cut(s) 56, 563, 605, 614, 623, 740, 965, 1127, 1291
Alw21I GWGCWC 1 cut(s) 1048
Alw26I GTCTC 7 cut(s) 72, 92, 194, 281, 739, 1130, 1545
Alw44I GTGCAC 1 cut(s) 1044
AlwNI CAGNNNCTG 4 cut(s) 743, 806, 890, 1187
Aor13HI TCCGGA 1 cut(s) 358
AoxI GGCC 4 cut(s) 152, 887, 1365, 1398
ApaLI GTGCAC 1 cut(s) 1044
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 2 cut(s) 1235, 1552
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
Asp700I GAANNNNTTC 1 cut(s) 772
AspLEI GCGC 1 cut(s) 949
AspS9I GGNCC 2 cut(s) 887, 1398
AsuHPI GGTGA 5 cut(s) 485, 764, 821, 1498, 1535
AxyI CCTNAGG 1 cut(s) 969
BaeGI GKGCMC 1 cut(s) 1048
BaeI ACNNNNGTAYC 2 cut(s) 371, 404
BalI TGGCCA 1 cut(s) 1367
BauI CACGAG 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 1048
BbvI GCAGC 1 cut(s) 43
BccI CCATC 8 cut(s) 131, 233, 294, 464, 1328, 1376, 1400, 1507
BciT130I CCWGG 1 cut(s) 801
BclI TGATCA 1 cut(s) 1165
BcoDI GTCTC 7 cut(s) 72, 92, 194, 281, 739, 1130, 1545
BcuI ACTAGT 2 cut(s) 458, 770
BfaI CTAG 6 cut(s) 459, 564, 620, 771, 831, 1503
BfuAI ACCTGC 1 cut(s) 440
BglII AGATCT 1 cut(s) 138
BisI GCNGC 1 cut(s) 57
BlpI GCTNAGC 1 cut(s) 1287
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 801
BmgT120I GGNCC 2 cut(s) 887, 1398
BmiI GGNNCC 1 cut(s) 1399
BmrFI CCNGG 1 cut(s) 801
BmsI GCATC 6 cut(s) 308, 330, 436, 1124, 1222, 1449
BoxI GACNNNNGTC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 696
Bpu1102I GCTNAGC 1 cut(s) 1287
BpuEI CTTGAG 1 cut(s) 1277
BsaBI GATNNNNATC 1 cut(s) 1170
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 800, 1272
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 806, 1226, 1505
Bse21I CCTNAGG 1 cut(s) 969
Bse8I GATNNNNATC 1 cut(s) 1170
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 1 cut(s) 801
BseDI CCNNGG 2 cut(s) 800, 1272
BseGI GGATG 3 cut(s) 323, 577, 1464
BseJI GATNNNNATC 1 cut(s) 1170
BseLI CCNNNNNNNGG 3 cut(s) 806, 1226, 1505
BseMII CTCAG 6 cut(s) 534, 687, 750, 897, 983, 1194
BseRI GAGGAG 1 cut(s) 957
BseSI GKGCMC 1 cut(s) 1048
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 3 cut(s) 1274, 1484, 1548
BshFI GGCC 4 cut(s) 154, 889, 1367, 1400
BsiHKAI GWGCWC 1 cut(s) 1048
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 1169
BslI CCNNNNNNNGG 3 cut(s) 806, 1226, 1505
BsmAI GTCTC 7 cut(s) 72, 92, 194, 281, 739, 1130, 1545
BsmBI CGTCTC 2 cut(s) 281, 1545
BsmFI GGGAC 1 cut(s) 1169
BsmI GAATGC 1 cut(s) 1495
BsnI GGCC 4 cut(s) 154, 889, 1367, 1400
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 1048
Bsp13I TCCGGA 1 cut(s) 358
Bsp143I GATC 3 cut(s) 104, 138, 1165
Bsp1720I GCTNAGC 1 cut(s) 1287
BspACI CCGC 4 cut(s) 1272, 1274, 1484, 1546
BspANI GGCC 4 cut(s) 154, 889, 1367, 1400
BspCNI CTCAG 6 cut(s) 535, 688, 749, 896, 982, 1193
BspEI TCCGGA 1 cut(s) 358
BspFNI CGCG 3 cut(s) 1274, 1484, 1548
BspLI GGNNCC 1 cut(s) 1399
BspMI ACCTGC 1 cut(s) 440
BspQI GCTCTTC 3 cut(s) 12, 105, 1197
BspTNI GGTCTC 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 800, 1272
BssMI GATC 3 cut(s) 104, 138, 1165
BssNI GRCGYC 1 cut(s) 213
BssSI CACGAG 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 3 cut(s) 86, 407, 673
Bst6I CTCTTC 7 cut(s) 12, 105, 300, 813, 1197, 1419, 1424
BstACI GRCGYC 1 cut(s) 213
BstDEI CTNAG 9 cut(s) 543, 696, 736, 883, 969, 1017, 1040, 1180, 1287
BstDSI CCRYGG 1 cut(s) 1272
BstF5I GGATG 3 cut(s) 323, 577, 1464
BstFNI CGCG 3 cut(s) 1274, 1484, 1548
BstHHI GCGC 1 cut(s) 949
BstKTI GATC 3 cut(s) 107, 141, 1168
BstMAI GTCTC 7 cut(s) 72, 92, 194, 281, 739, 1130, 1545
BstMBI GATC 3 cut(s) 104, 138, 1165
BstMWI GCNNNNNNNGC 5 cut(s) 611, 620, 1112, 1459, 1490
BstNI CCWGG 1 cut(s) 801
BstNSI RCATGY 2 cut(s) 370, 866
BstPAI GACNNNNGTC 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 799
BstSLI GKGCMC 1 cut(s) 1048
BstUI CGCG 3 cut(s) 1274, 1484, 1548
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 969
BsuRI GGCC 4 cut(s) 154, 889, 1367, 1400
BtgI CCRYGG 1 cut(s) 1272
BtsCI GGATG 3 cut(s) 323, 577, 1464
BveI ACCTGC 1 cut(s) 440
CaiI CAGNNNCTG 4 cut(s) 743, 806, 890, 1187
CfoI GCGC 1 cut(s) 949
Cfr13I GGNCC 2 cut(s) 887, 1398
Cfr42I CCGCGG 1 cut(s) 1275
CseI GACGC 2 cut(s) 221, 635
Csp6I GTAC 2 cut(s) 196, 692
CviAII CATG 6 cut(s) 367, 627, 701, 708, 863, 1222
CviQI GTAC 2 cut(s) 196, 692
DdeI CTNAG 9 cut(s) 543, 696, 736, 883, 969, 1017, 1040, 1180, 1287
DpnI GATC 3 cut(s) 106, 140, 1167
DpnII GATC 3 cut(s) 104, 138, 1165
EaeI YGGCCR 1 cut(s) 1365
Eam1104I CTCTTC 7 cut(s) 12, 105, 300, 813, 1197, 1419, 1424
EarI CTCTTC 7 cut(s) 12, 105, 300, 813, 1197, 1419, 1424
Eco31I GGTCTC 1 cut(s) 194
Eco32I GATATC 1 cut(s) 1345
Eco81I CCTNAGG 1 cut(s) 969
EcoO109I RGGNCCY 2 cut(s) 887, 1398
EcoRII CCWGG 1 cut(s) 799
EcoRV GATATC 1 cut(s) 1345
EcoT22I ATGCAT 1 cut(s) 323
Esp3I CGTCTC 2 cut(s) 281, 1545
FaeI CATG 6 cut(s) 370, 630, 704, 711, 866, 1225
FalI AAGNNNNNCTT 2 cut(s) 1301, 1333
FaqI GGGAC 1 cut(s) 1169
FatI CATG 6 cut(s) 366, 626, 700, 707, 862, 1221
FauI CCCGC 1 cut(s) 1279
FbaI TGATCA 1 cut(s) 1165
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 3 cut(s) 330, 584, 1471
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 6 cut(s) 459, 564, 620, 771, 831, 1503
GlaI GCGC 1 cut(s) 948
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 4 cut(s) 154, 889, 1367, 1400
HapII CCGG 1 cut(s) 359
HgaI GACGC 2 cut(s) 221, 635
HhaI GCGC 1 cut(s) 949
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 6 cut(s) 370, 630, 704, 711, 866, 1225
Hin6I GCGC 1 cut(s) 947
HinP1I GCGC 1 cut(s) 947
HinfI GANTC 6 cut(s) 119, 332, 704, 877, 1005, 1099
HpaII CCGG 1 cut(s) 359
HphI GGTGA 5 cut(s) 485, 764, 821, 1498, 1535
Hpy166II GTNNAC 5 cut(s) 133, 403, 579, 755, 1046
Hpy188I TCNGA 4 cut(s) 16, 202, 778, 1558
Hpy188III TCNNGA 9 cut(s) 359, 484, 959, 1199, 1257, 1294, 1331, 1372, 1503
Hpy8I GTNNAC 5 cut(s) 133, 403, 579, 755, 1046
Hpy99I CGWCG 3 cut(s) 78, 215, 1458
HpyAV CCTTC 3 cut(s) 188, 1219, 1388
HpyCH4III ACNGT 3 cut(s) 86, 407, 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 611, 620, 1112, 1459, 1490
HpyF3I CTNAG 9 cut(s) 543, 696, 736, 883, 969, 1017, 1040, 1180, 1287
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 6 cut(s) 370, 630, 704, 711, 866, 1225
HspAI GCGC 1 cut(s) 947
Kpn2I TCCGGA 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 1165
KspI CCGCGG 1 cut(s) 1275
Kzo9I GATC 3 cut(s) 104, 138, 1165
LguI GCTCTTC 3 cut(s) 12, 105, 1197
LmnI GCTCC 2 cut(s) 602, 970
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 6 cut(s) 308, 330, 436, 1124, 1222, 1449
MaeI CTAG 6 cut(s) 459, 564, 620, 771, 831, 1503
MaeIII GTNAC 3 cut(s) 437, 513, 899
MalI GATC 3 cut(s) 106, 140, 1167
MboI GATC 3 cut(s) 104, 138, 1165
MfeI CAATTG 1 cut(s) 1143
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 1048
MlsI TGGCCA 1 cut(s) 1367
MluCI AATT 8 cut(s) 253, 488, 790, 1143, 1159, 1235, 1279, 1552
MluNI TGGCCA 1 cut(s) 1367
MlyI GAGTC 2 cut(s) 113, 1014
MmeI TCCRAC 1 cut(s) 767
Mox20I TGGCCA 1 cut(s) 1367
Mph1103I ATGCAT 1 cut(s) 323
MroI TCCGGA 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 772
MscI TGGCCA 1 cut(s) 1367
MseI TTAA 4 cut(s) 264, 417, 1157, 1278
MslI CAYNNNNRTG 2 cut(s) 867, 1373
Msp20I TGGCCA 1 cut(s) 1367
MspA1I CMGCKG 1 cut(s) 1274
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 801
MunI CAATTG 1 cut(s) 1143
Mva1269I GAATGC 1 cut(s) 1495
MvaI CCWGG 1 cut(s) 801
MvnI CGCG 3 cut(s) 1274, 1484, 1548
MwoI GCNNNNNNNGC 5 cut(s) 611, 620, 1112, 1459, 1490
NdeII GATC 3 cut(s) 104, 138, 1165
NlaIII CATG 6 cut(s) 370, 630, 704, 711, 866, 1225
NlaIV GGNNCC 1 cut(s) 1399
NsiI ATGCAT 1 cut(s) 323
NspI RCATGY 2 cut(s) 370, 866
PciI ACATGT 1 cut(s) 862
PciSI GCTCTTC 3 cut(s) 12, 105, 1197
PctI GAATGC 1 cut(s) 1495
PdmI GAANNNNTTC 1 cut(s) 772
PfeI GAWTC 4 cut(s) 332, 704, 877, 1099
PflMI CCANNNNNTGG 1 cut(s) 806
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 2 cut(s) 113, 1013
PpsI GAGTC 2 cut(s) 113, 1013
PscI ACATGT 1 cut(s) 862
PshAI GACNNNNGTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 799
PspGI CCWGG 1 cut(s) 799
PspN4I GGNNCC 1 cut(s) 1399
PspPI GGNCC 2 cut(s) 887, 1398
PstNI CAGNNNCTG 4 cut(s) 743, 806, 890, 1187
PsuI RGATCY 1 cut(s) 138
RsaI GTAC 2 cut(s) 197, 693
RsaNI GTAC 2 cut(s) 196, 692
RseI CAYNNNNRTG 2 cut(s) 867, 1373
SacII CCGCGG 1 cut(s) 1275
SapI GCTCTTC 3 cut(s) 12, 105, 1197
SaqAI TTAA 4 cut(s) 264, 417, 1157, 1278
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 3 cut(s) 104, 138, 1165
Sau96I GGNCC 2 cut(s) 887, 1398
SchI GAGTC 2 cut(s) 113, 1014
ScrFI CCNGG 1 cut(s) 801
SduI GDGCHC 1 cut(s) 1048
SfaNI GCATC 6 cut(s) 308, 330, 436, 1124, 1222, 1449
Sfr303I CCGCGG 1 cut(s) 1275
SgrBI CCGCGG 1 cut(s) 1275
SmiMI CAYNNNNRTG 2 cut(s) 867, 1373
SmlI CTYRAG 1 cut(s) 1292
SmoI CTYRAG 1 cut(s) 1292
SpeI ACTAGT 2 cut(s) 458, 770
Sse9I AATT 8 cut(s) 253, 488, 790, 1143, 1159, 1235, 1279, 1552
SsiI CCGC 4 cut(s) 1272, 1274, 1484, 1546
SspI AATATT 2 cut(s) 414, 1467
SspMI CTAG 6 cut(s) 459, 564, 620, 771, 831, 1503
StyD4I CCNGG 1 cut(s) 799
TaaI ACNGT 3 cut(s) 86, 407, 673
TaqI TCGA 5 cut(s) 103, 210, 371, 943, 1495
TasI AATT 8 cut(s) 253, 488, 790, 1143, 1159, 1235, 1279, 1552
TfiI GAWTC 4 cut(s) 332, 704, 877, 1099
Tru1I TTAA 4 cut(s) 264, 417, 1157, 1278
Tru9I TTAA 4 cut(s) 264, 417, 1157, 1278
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 8 cut(s) 615, 696, 702, 831, 1041, 1080, 1238, 1404
TspGWI ACGGA 1 cut(s) 1471
Van91I CCANNNNNTGG 1 cut(s) 806
VneI GTGCAC 1 cut(s) 1044
XapI RAATTY 2 cut(s) 1235, 1552
XbaI TCTAGA 1 cut(s) 1502
XceI RCATGY 2 cut(s) 370, 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 852
XmnI GAANNNNTTC 1 cut(s) 772
XspI CTAG 6 cut(s) 459, 564, 620, 771, 831, 1503
Zsp2I ATGCAT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.