Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003887

Physical Location & Seq

Genomic Coordinates Forward (+)

87213064 .. 87216338

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGTCGAAGACGATTCCGATTTGGACTTGCGTTTTGAACCGTTCGATTCAAAACCATAGAGAAAGAATGCGGCAGAGTGCTCTGGTTAATGATGGGCTGAGTTTAGAAAACCTCAAGGAGTCAAGTACTTGTGATGAATATTATGGAGATACAAGACAGATGCCTATTGATTGGGATTGTTCCTTGCATCTTCCGCTTTGGGTGTCTGGAACAGAGAGAGCTTCTATCGAGAAGCAATTAGAAGAATGGACTCAACAGTTGGATGCAAGTGGAGCTGATATTAGCTCTCTAGCTTCTTGTTTAAAGAAGCCTTTACGCCCTCTATGGATATCACAGAAAACTGTCATTTGGTTGAATGAAGTTCCAGACCATGAGTCCTGGGATTTCACACCTATCATTCTTGTTTCTGCCTCATCCCCGAGTGGTGTTGTGCAACGCAGGATTAGTTCAGAATTTAGCTGGAATTATATACCAGGAGCTGGTGATGATGAAGAAAGTTGGGCGAGGGGTTTAACACCTAGTCTTTTCTGGAATTGTGCCTATGATATTATAAATGCAGGTCCTGAAATGTGTAATCAGATGGTGGCTGATATAGTTGAGAAGGATAGAGTGTATCGTGCTCGAAGGGGACAGGATGCTCCTCAGGTCACTGTTAAGGCTCCAAATCTGTTACCAAGCTCAGATCATCGGTTGAGTGACAATGATGAGTCACAATTAGCTGTGGATCTTGCAAACTTTAATATCGATCGTAATTCTTCTGATGAAGATTGTGTTATATCTTGGCTTGGTTTGACTAACCTTGCTGTAGGCACATCTCAAAACGCTGGTGTATCTAAAGTTGACTGCATATTAAATTGTGATAAGGAGTCTATCTCTGCTGATCCTAAAGCATATTTACATCTTCCTATGGTGACATCAAAGTTTGATCGCTTCTCCTTGTTAAATAATCTCCCTTCTGCGGTAAACTTTGCAAAGTTGAACCTCAGCCAAGGGAAGACACTTCTAATTTGTTGCGATAATGGGGAAGATATCAGTGTATGCATCTGTCTGGCAATCTTGACAGCACTATTTGATGAAGAAGGAACCTTCGATGGTGGAAACTTCTTCAGTGACACATGCATTACCAAGTTAGAAATGCGGAGAAGACTCATTACTATATGCAAATATGTAGTAAATGCCAGGCCATCAAGAGGGAATCTGAAGCAGGTTTTTAACTTTCTTAGTGGTGGAAGAGCTGGTTTGACAAACATGCCTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0019988 GO:0034470 GO:0034641 GO:0034660 GO:0036211 GO:0043170 GO:0043399 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Init_tRNA_PT Rit1_C

Protein Analysis

419

Amino Acids

46.7

Weight (kDa)

4.97

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rit1_C	PF17184	1 - 200	5.6e-44	Rit1 N-terminal domain
Init_tRNA_PT	PF04179	298 - 407	4.2e-32	Rit1 DUSP-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40570 AT2G40570 AT2G40570
fragaria_vesca	FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070
malus_domestica	MD02G1065300.v1.1 MD15G1196200.v1.1
prunus_persica	Prupe.7G220200_v2.0.a1 Prupe.7G220200_v2.0.a1 Prupe.7G220200_v2.0.a1
pyrus_communis	pycom02g05140
rosa_chinensis	RchiOBHm_Chr2g0091831
rosa_laevigata	RLG00000016255
rosa_multiflora	Rmu_sc0021402.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149700
rosa_rugosa	Rorug02G0021400
rosa_samantha	Rh2AG066000 Rh2BG065500 Rh2CG066900 Rh2DG065100
rosa_wichuraiana	Rw2G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
Acc36I	ACCTGC	2 cut(s)	548, 1195
AccB7I	CCANNNNNTGG	1 cut(s)	479
AciI	CCGC	4 cut(s)	70, 194, 959, 1138
AclWI	GGATC	2 cut(s)	732, 875
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	2 cut(s)	1090, 1220
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	3 cut(s)	479, 958, 1190
AgsI	TTSAA	4 cut(s)	37, 50, 355, 979
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	3 cut(s)	377, 472, 1178
AluBI	AGCT	9 cut(s)	221, 275, 285, 293, 459, 479, 678, 719, 1235
AluI	AGCT	9 cut(s)	221, 275, 285, 293, 459, 479, 678, 719, 1235
Alw21I	GWGCWC	2 cut(s)	82, 622
AlwI	GGATC	2 cut(s)	732, 875
AlwNI	CAGNNNCTG	2 cut(s)	479, 563
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	1 cut(s)	1181
ApoI	RAATTY	1 cut(s)	452
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	2 cut(s)	494, 922
AvaI	CYCGRG	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	560
AxyI	CCTNAGG	1 cut(s)	642
BarI	GAAGNNNNNNTAC	2 cut(s)	1135, 1167
BbsI	GAAGAC	3 cut(s)	14, 1001, 1150
Bbv12I	GWGCWC	2 cut(s)	82, 622
BbvCI	CCTCAGC	1 cut(s)	983
BccI	CCATC	4 cut(s)	86, 574, 1085, 1192
BciT130I	CCWGG	3 cut(s)	379, 474, 1180
BfaI	CTAG	2 cut(s)	290, 519
BfmI	CTRYAG	1 cut(s)	804
BfuAI	ACCTGC	2 cut(s)	548, 1195
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
BmcAI	AGTACT	1 cut(s)	127
Bme1390I	CCNGG	3 cut(s)	379, 474, 1180
Bme18I	GGWCC	1 cut(s)	560
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	2 cut(s)	660, 1084
BmrFI	CCNGG	3 cut(s)	379, 474, 1180
BmsI	GCATC	5 cut(s)	150, 196, 253, 625, 1050
BpiI	GAAGAC	3 cut(s)	14, 1001, 1150
BplI	GAGNNNNNCTC	2 cut(s)	857, 889
Bpu10I	CCTNAGC	1 cut(s)	983
BpuEI	CTTGAG	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	744
BsaAI	YACGTR	1 cut(s)	1257
BsaJI	CCNNGG	2 cut(s)	378, 988
Bsc4I	CCNNNNNNNGG	3 cut(s)	479, 958, 1190
Bse21I	CCTNAGG	1 cut(s)	642
BseBI	CCWGG	3 cut(s)	379, 474, 1180
BseCI	ATCGAT	1 cut(s)	744
BseDI	CCNNGG	2 cut(s)	378, 988
BseGI	GGATG	3 cut(s)	268, 413, 640
BseLI	CCNNNNNNNGG	3 cut(s)	479, 958, 1190
BseMII	CTCAG	4 cut(s)	89, 656, 693, 997
BseRI	GAGGAG	1 cut(s)	630
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	1 cut(s)	1183
BshVI	ATCGAT	1 cut(s)	744
BsiEI	CGRYCG	1 cut(s)	748
BsiHKAI	GWGCWC	2 cut(s)	82, 622
BsiHKCI	CYCGRG	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	3 cut(s)	479, 958, 1190
BsmFI	GGGAC	1 cut(s)	642
BsmI	GAATGC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	1183
BsoBI	CYCGRG	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	82, 622
Bsp143I	GATC	5 cut(s)	682, 724, 745, 880, 925
BspACI	CCGC	4 cut(s)	70, 194, 959, 1138
BspANI	GGCC	1 cut(s)	1183
BspCNI	CTCAG	4 cut(s)	90, 655, 692, 996
BspDI	ATCGAT	1 cut(s)	744
BspLI	GGNNCC	2 cut(s)	660, 1084
BspMI	ACCTGC	2 cut(s)	548, 1195
BspPI	GGATC	2 cut(s)	732, 875
BspQI	GCTCTTC	1 cut(s)	1225
BssECI	CCNNGG	2 cut(s)	378, 988
BssMI	GATC	5 cut(s)	682, 724, 745, 880, 925
BssT1I	CCWWGG	1 cut(s)	988
Bst2UI	CCWGG	3 cut(s)	379, 474, 1180
Bst4CI	ACNGT	4 cut(s)	41, 258, 343, 652
Bst6I	CTCTTC	1 cut(s)	1225
BstBAI	YACGTR	1 cut(s)	1257
BstDEI	CTNAG	5 cut(s)	98, 642, 679, 983, 1220
BstF5I	GGATG	3 cut(s)	268, 413, 640
BstKTI	GATC	5 cut(s)	685, 727, 748, 883, 928
BstMBI	GATC	5 cut(s)	682, 724, 745, 880, 925
BstMCI	CGRYCG	1 cut(s)	748
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 272
BstNI	CCWGG	3 cut(s)	379, 474, 1180
BstNSI	RCATGY	2 cut(s)	1119, 1252
BstSCI	CCNGG	3 cut(s)	377, 472, 1178
BstSFI	CTRYAG	1 cut(s)	804
BstSNI	TACGTA	1 cut(s)	1257
BstV2I	GAAGAC	3 cut(s)	14, 1001, 1150
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
Bsu15I	ATCGAT	1 cut(s)	744
Bsu36I	CCTNAGG	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	1183
BsuTUI	ATCGAT	1 cut(s)	744
BtsCI	GGATG	3 cut(s)	268, 413, 640
BtsIMutI	CAGTG	3 cut(s)	648, 1039, 1114
BveI	ACCTGC	2 cut(s)	548, 1195
CaiI	CAGNNNCTG	2 cut(s)	479, 563
Cfr13I	GGNCC	1 cut(s)	560
ClaI	ATCGAT	1 cut(s)	744
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	3 cut(s)	371, 1116, 1249
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	5 cut(s)	98, 642, 679, 983, 1220
DpnI	GATC	5 cut(s)	684, 726, 747, 882, 927
DpnII	GATC	5 cut(s)	682, 724, 745, 880, 925
DraI	TTTAAA	1 cut(s)	303
DriI	GACNNNNNGTC	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	1225
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	1225
Eco105I	TACGTA	1 cut(s)	1257
Eco130I	CCWWGG	1 cut(s)	988
Eco32I	GATATC	2 cut(s)	330, 1030
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	2 cut(s)	1090, 1220
Eco81I	CCTNAGG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRII	CCWGG	3 cut(s)	377, 472, 1178
EcoRV	GATATC	2 cut(s)	330, 1030
EcoT14I	CCWWGG	1 cut(s)	988
EcoT22I	ATGCAT	2 cut(s)	1043, 1121
ErhI	CCWWGG	1 cut(s)	988
FaeI	CATG	3 cut(s)	374, 1119, 1252
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	3 cut(s)	370, 1115, 1248
Fnu4HI	GCNGC	1 cut(s)	71
FokI	GGATG	3 cut(s)	275, 400, 647
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	2 cut(s)	290, 519
GluI	GCNGC	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	1183
Hin1II	CATG	3 cut(s)	374, 1119, 1252
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	9 cut(s)	13, 46, 119, 250, 374, 707, 866, 1146, 1195
HphI	GGTGA	2 cut(s)	494, 922
Hpy166II	GTNNAC	2 cut(s)	841, 964
Hpy188I	TCNGA	6 cut(s)	18, 451, 579, 682, 760, 1200
Hpy188III	TCNNGA	7 cut(s)	207, 229, 365, 529, 563, 1057, 1188
Hpy8I	GTNNAC	2 cut(s)	841, 964
HpyAV	CCTTC	5 cut(s)	595, 618, 963, 1073, 1096
HpyCH4III	ACNGT	4 cut(s)	41, 258, 343, 652
HpyCH4IV	ACGT	1 cut(s)	1256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 272
HpyF3I	CTNAG	5 cut(s)	98, 642, 679, 983, 1220
HpySE526I	ACGT	1 cut(s)	1256
Hsp92II	CATG	3 cut(s)	374, 1119, 1252
Kzo9I	GATC	5 cut(s)	682, 724, 745, 880, 925
LguI	GCTCTTC	1 cut(s)	1225
LmnI	GCTCC	4 cut(s)	272, 476, 643, 664
LweI	GCATC	5 cut(s)	150, 196, 253, 625, 1050
MaeI	CTAG	2 cut(s)	290, 519
MaeII	ACGT	1 cut(s)	1256
MaeIII	GTNAC	6 cut(s)	646, 669, 695, 708, 910, 1109
MalI	GATC	5 cut(s)	684, 726, 747, 882, 927
MboI	GATC	5 cut(s)	682, 724, 745, 880, 925
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	2 cut(s)	82, 622
MluCI	AATT	8 cut(s)	236, 452, 463, 532, 713, 751, 853, 1005
MlyI	GAGTC	6 cut(s)	128, 244, 383, 716, 875, 1140
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	7 cut(s)	122, 330, 421, 498, 651, 992, 1184
Mph1103I	ATGCAT	2 cut(s)	1043, 1121
MseI	TTAA	8 cut(s)	87, 302, 512, 654, 738, 851, 941, 1212
MspR9I	CCNGG	3 cut(s)	379, 474, 1180
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	3 cut(s)	379, 474, 1180
MwoI	GCNNNNNNNGC	2 cut(s)	193, 272
NdeII	GATC	5 cut(s)	682, 724, 745, 880, 925
NlaIII	CATG	3 cut(s)	374, 1119, 1252
NlaIV	GGNNCC	2 cut(s)	660, 1084
NmuCI	GTSAC	5 cut(s)	646, 695, 708, 910, 1109
NsiI	ATGCAT	2 cut(s)	1043, 1121
NspI	RCATGY	2 cut(s)	1119, 1252
PciSI	GCTCTTC	1 cut(s)	1225
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	3 cut(s)	13, 46, 1195
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	72
Ple19I	CGATCG	1 cut(s)	748
PleI	GAGTC	6 cut(s)	127, 244, 382, 715, 874, 1140
PpsI	GAGTC	6 cut(s)	127, 244, 382, 715, 874, 1140
Ppu21I	YACGTR	1 cut(s)	1257
PpuMI	RGGWCCY	1 cut(s)	560
PsiI	TTATAA	1 cut(s)	551
Psp5II	RGGWCCY	1 cut(s)	560
Psp6I	CCWGG	3 cut(s)	377, 472, 1178
PspGI	CCWGG	3 cut(s)	377, 472, 1178
PspN4I	GGNNCC	2 cut(s)	660, 1084
PspPI	GGNCC	1 cut(s)	560
PspPPI	RGGWCCY	1 cut(s)	560
PstNI	CAGNNNCTG	2 cut(s)	479, 563
PsuI	RGATCY	1 cut(s)	724
PvuI	CGATCG	1 cut(s)	748
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	1225
SaqAI	TTAA	8 cut(s)	87, 302, 512, 654, 738, 851, 941, 1212
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	5 cut(s)	682, 724, 745, 880, 925
Sau96I	GGNCC	1 cut(s)	560
ScaI	AGTACT	1 cut(s)	127
SchI	GAGTC	6 cut(s)	128, 244, 383, 716, 875, 1140
ScrFI	CCNGG	3 cut(s)	379, 474, 1180
SduI	GDGCHC	2 cut(s)	82, 622
SfaNI	GCATC	5 cut(s)	150, 196, 253, 625, 1050
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SnaBI	TACGTA	1 cut(s)	1257
Sse9I	AATT	8 cut(s)	236, 452, 463, 532, 713, 751, 853, 1005
SsiI	CCGC	4 cut(s)	70, 194, 959, 1138
SspI	AATATT	1 cut(s)	140
SspMI	CTAG	2 cut(s)	290, 519
StyD4I	CCNGG	3 cut(s)	377, 472, 1178
StyI	CCWWGG	1 cut(s)	988
TaaI	ACNGT	4 cut(s)	41, 258, 343, 652
TaiI	ACGT	1 cut(s)	1259
TaqI	TCGA	6 cut(s)	5, 44, 228, 622, 744, 1089
TasI	AATT	8 cut(s)	236, 452, 463, 532, 713, 751, 853, 1005
TatI	WGTACW	1 cut(s)	125
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	13, 46, 1195
Tru1I	TTAA	8 cut(s)	87, 302, 512, 654, 738, 851, 941, 1212
Tru9I	TTAA	8 cut(s)	87, 302, 512, 654, 738, 851, 941, 1212
TscAI	CASTG	3 cut(s)	655, 1039, 1114
TseFI	GTSAC	5 cut(s)	646, 695, 708, 910, 1109
Tsp45I	GTSAC	5 cut(s)	646, 695, 708, 910, 1109
TspDTI	ATGAA	5 cut(s)	150, 372, 504, 777, 1089
TspRI	CASTG	3 cut(s)	655, 1039, 1114
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	2 cut(s)	1119, 1252
XspI	CTAG	2 cut(s)	290, 519
ZrmI	AGTACT	1 cut(s)	127
Zsp2I	ATGCAT	2 cut(s)	1043, 1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.