pycom02g05140

Rit1 N-terminal domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
3397327 .. 3402206
4880 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g05140.6

Sequence Viewer

Length: 1374 bp
ATGGAAGAGGACGACGGCACGAAGCAGCTGAGCATATACAGGGCGGCCAGGACAATAAAACAACGGCAGAACACCCTCTACAACGCCCTCAAATCAATCTACGACGACTCAATCTTTGTCGGAGAAATCTCCCAGCTCTGGCCGGACCTCCCTCTCCTCGCCAACCTCCGCTGCGGCCTCTGGTATTCTCCAACTGCCAACTTCCACTCCACCTGCTACTTCAAATCCACCGACGGCCACACAAACAACTGGTCCTTCAACACCTCCCGCCTCAACCTCCACGTCGCCCAACTTGCCGGACAGAAAGGAGGGTGCTTTATTGTGGATGCGACTCGGAAGGGGAAGCGCTTTCCGGATAGCATGTCGAAGACGATTCCGATTTGGACATGTGTTTTGAATCGGGCGATTTATAGGCATTGGAAAAAAGATCGTCAGAGTGATTTGTTCAATGATGAGGAGCTAAGTACTTCTGGTGAACATTCTGAAGAGAATGGACAGACCAATTTTGATTGGGATTGTTCCTTGCATCTACCTCTTTGGGTTTCAGAAACAGAGAAGGCATCTATTGAGGATCGAGTAGACGAATGGACTCAACAGTTGGAAGCCAGCGGTGCTGACATTGCCCCTCTTGCTTCTTTATTGAAAAAGCCGCTGCGCCCTCTGTGGATATCACAAAAGACTGTGATTTGGTTGAATGAAGTTCCGGACCATGAATCCTGGGATTTCACACCCATCATTCTTGTTTCTGCCTCTGCCTCTAATGGTGTTGTACCACACAGGACTAGTTCGGAATTTAGCTGGAATTACATAGCAGGAGCCGGTGATGATGAAGAAAGCTGGGCAAGGGGTTTAACACCTACCCTCTTCTGGAACCATGCCTATGATATTATCGATGCGGGGCCTGTTTTGTGTAACCAGATGGTAGCTGATATAGTTGAGAAGGATCGTGTTTATCGTGCTCGAAGGGGACAAATTGCTCCTCAGGTTTCTGTCAAGGCCCCAAATTTGGTAGAAAACTCAGTTCATTGTTTGCATGGCGACTCGTTGTTGCCTTTGGATATTTCAAACACAAATATGGATTTAAATCCTTGTGATGAAGATTGTCCTATGTCGTGGCTGGGTTCAACTGGCCTTGCTGTAGGCATATCTCCAAACGCTGCAGTATCTAAAGTTGATTGCATATTAAATTGTGATCAAGAGTCAATCCCTGTTTCTCATCGGAATGCTAAAGCATATATGCATCTTCCTATGGTGACATCAAAGTTTGATCGGTTTTCCTTGTTGAATAATCTCCCTTCTGCTGTGAACTTTGCAAAGTTGAATCTAAGTGAAGGGAAGACCCTCCTAATTTGTTGCCACAACGGATACTCTTAA

Protein Analysis

458

Amino Acids

51.25

Weight (kDa)

5.46

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 579
AccIII TCCGGA 2 cut(s) 352, 703
AciI CCGC 7 cut(s) 44, 169, 174, 268, 609, 650, 896
AclWI GGATC 2 cut(s) 579, 951
AcoI YGGCCR 3 cut(s) 45, 140, 235
AcsI RAATTY 2 cut(s) 791, 1003
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 2 cut(s) 466, 771
AfeI AGCGCT 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 138, 867, 1006
AflIII ACRYGT 1 cut(s) 386
AhlI ACTAGT 1 cut(s) 782
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 2 cut(s) 47, 716
AluBI AGCT 6 cut(s) 28, 136, 460, 798, 837, 926
AluI AGCT 6 cut(s) 28, 136, 460, 798, 837, 926
Alw21I GWGCWC 1 cut(s) 961
AlwI GGATC 2 cut(s) 579, 951
Aor13HI TCCGGA 2 cut(s) 352, 703
Aor51HI AGCGCT 1 cut(s) 347
AoxI GGCC 7 cut(s) 45, 140, 175, 235, 899, 996, 1129
ApeKI GCWGC 4 cut(s) 25, 171, 652, 1157
ApoI RAATTY 2 cut(s) 791, 1003
ArsI GACNNNNNNTTYG 6 cut(s) 98, 130, 236, 268, 376, 408
AspLEI GCGC 2 cut(s) 348, 657
AspS9I GGNCC 5 cut(s) 145, 252, 706, 899, 997
AsuHPI GGTGA 3 cut(s) 485, 833, 1264
AvaII GGWCC 3 cut(s) 145, 252, 706
AxyI CCTNAGG 1 cut(s) 981
BbsI GAAGAC 2 cut(s) 374, 1343
Bbv12I GWGCWC 1 cut(s) 961
BbvI GCAGC 4 cut(s) 37, 158, 639, 1144
BccI CCATC 2 cut(s) 740, 913
BceAI ACGGC 3 cut(s) 31, 80, 250
BciT130I CCWGG 2 cut(s) 49, 718
BciVI GTATCC 1 cut(s) 1358
BclI TGATCA 1 cut(s) 1192
BcuI ACTAGT 1 cut(s) 782
BfaI CTAG 1 cut(s) 783
BfmI CTRYAG 2 cut(s) 1137, 1158
BfoI RGCGCY 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 221
BfuI GTATCC 1 cut(s) 1358
BisI GCNGC 7 cut(s) 26, 45, 172, 175, 650, 653, 1158
BlpI GCTNAGC 1 cut(s) 29
BlsI GCNGC 7 cut(s) 27, 46, 173, 176, 651, 654, 1159
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 49, 718
Bme18I GGWCC 3 cut(s) 145, 252, 706
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 5 cut(s) 145, 252, 706, 899, 997
BmiI GGNNCC 4 cut(s) 817, 872, 900, 999
BmrFI CCNGG 2 cut(s) 49, 718
BmsI GCATC 5 cut(s) 316, 535, 569, 883, 1249
BpiI GAAGAC 2 cut(s) 374, 1343
Bpu1102I GCTNAGC 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 891
BsaBI GATNNNNATC 1 cut(s) 1083
BsaJI CCNNGG 1 cut(s) 717
BsaWI WCCGGW 2 cut(s) 352, 703
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 867, 1006
Bse118I RCCGGY 1 cut(s) 818
Bse1I ACTGG 2 cut(s) 254, 1132
Bse21I CCTNAGG 1 cut(s) 981
Bse3DI GCAATG 1 cut(s) 618
Bse8I GATNNNNATC 1 cut(s) 1083
BseAI TCCGGA 2 cut(s) 352, 703
BseBI CCWGG 2 cut(s) 49, 718
BseCI ATCGAT 1 cut(s) 891
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 1083
BseLI CCNNNNNNNGG 3 cut(s) 138, 867, 1006
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 3 cut(s) 20, 995, 1032
BseNI ACTGG 2 cut(s) 254, 1132
BseRI GAGGAG 3 cut(s) 146, 470, 969
BseXI GCAGC 4 cut(s) 37, 158, 639, 1144
BseYI CCCAGC 3 cut(s) 132, 837, 1117
BshFI GGCC 7 cut(s) 47, 142, 177, 237, 901, 998, 1131
BshVI ATCGAT 1 cut(s) 891
BsiHKAI GWGCWC 1 cut(s) 961
BsiSI CCGG 5 cut(s) 143, 297, 353, 704, 819
BslFI GGGAC 1 cut(s) 981
BslI CCNNNNNNNGG 3 cut(s) 138, 867, 1006
BsmFI GGGAC 1 cut(s) 981
BsmI GAATGC 1 cut(s) 1228
BsnI GGCC 7 cut(s) 47, 142, 177, 237, 901, 998, 1131
Bsp1286I GDGCHC 1 cut(s) 961
Bsp13I TCCGGA 2 cut(s) 352, 703
Bsp143I GATC 5 cut(s) 427, 571, 943, 1192, 1267
Bsp1720I GCTNAGC 1 cut(s) 29
BspACI CCGC 7 cut(s) 44, 169, 174, 268, 609, 650, 896
BspANI GGCC 7 cut(s) 47, 142, 177, 237, 901, 998, 1131
BspCNI CTCAG 3 cut(s) 21, 994, 1031
BspDI ATCGAT 1 cut(s) 891
BspEI TCCGGA 2 cut(s) 352, 703
BspLI GGNNCC 4 cut(s) 817, 872, 900, 999
BspMAI CTGCAG 1 cut(s) 1162
BspMI ACCTGC 1 cut(s) 221
BspPI GGATC 2 cut(s) 579, 951
BsrDI GCAATG 1 cut(s) 618
BsrFI RCCGGY 1 cut(s) 818
BsrI ACTGG 2 cut(s) 254, 1132
BssAI RCCGGY 1 cut(s) 818
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 5 cut(s) 427, 571, 943, 1192, 1267
Bst2UI CCWGG 2 cut(s) 49, 718
Bst4CI ACNGT 2 cut(s) 597, 682
Bst6I CTCTTC 2 cut(s) 480, 869
BstC8I GCNNGC 1 cut(s) 607
BstDEI CTNAG 5 cut(s) 29, 461, 981, 1018, 1325
BstF5I GGATG 1 cut(s) 331
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 2 cut(s) 348, 657
BstKTI GATC 5 cut(s) 430, 574, 946, 1195, 1270
BstMBI GATC 5 cut(s) 427, 571, 943, 1192, 1267
BstMWI GCNNNNNNNGC 4 cut(s) 293, 611, 620, 629
BstNI CCWGG 2 cut(s) 49, 718
BstNSI RCATGY 2 cut(s) 364, 390
BstSCI CCNGG 2 cut(s) 47, 716
BstSFI CTRYAG 2 cut(s) 1137, 1158
BstV1I GCAGC 4 cut(s) 37, 158, 639, 1144
BstV2I GAAGAC 2 cut(s) 374, 1343
Bsu15I ATCGAT 1 cut(s) 891
Bsu36I CCTNAGG 1 cut(s) 981
BsuI GTATCC 1 cut(s) 1358
BsuRI GGCC 7 cut(s) 47, 142, 177, 237, 901, 998, 1131
BsuTUI ATCGAT 1 cut(s) 891
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 331
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 607
CfoI GCGC 2 cut(s) 348, 657
Cfr10I RCCGGY 1 cut(s) 818
Cfr13I GGNCC 5 cut(s) 145, 252, 706, 899, 997
ClaI ATCGAT 1 cut(s) 891
Csp6I GTAC 2 cut(s) 465, 770
CviAII CATG 5 cut(s) 361, 387, 710, 875, 1034
CviQI GTAC 2 cut(s) 465, 770
DdeI CTNAG 5 cut(s) 29, 461, 981, 1018, 1325
DpnI GATC 5 cut(s) 429, 573, 945, 1194, 1269
DpnII GATC 5 cut(s) 427, 571, 943, 1192, 1267
DraI TTTAAA 1 cut(s) 1083
EaeI YGGCCR 3 cut(s) 45, 140, 235
Eam1104I CTCTTC 2 cut(s) 480, 869
EarI CTCTTC 2 cut(s) 480, 869
Eco32I GATATC 1 cut(s) 669
Eco47I GGWCC 3 cut(s) 145, 252, 706
Eco47III AGCGCT 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 504
Eco81I CCTNAGG 1 cut(s) 981
EcoO109I RGGNCCY 2 cut(s) 899, 997
EcoRII CCWGG 2 cut(s) 47, 716
EcoRV GATATC 1 cut(s) 669
EcoT22I ATGCAT 1 cut(s) 1242
FaeI CATG 5 cut(s) 364, 390, 713, 878, 1037
FaqI GGGAC 1 cut(s) 981
FatI CATG 5 cut(s) 360, 386, 709, 874, 1033
FauI CCCGC 2 cut(s) 275, 889
FbaI TGATCA 1 cut(s) 1192
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 7 cut(s) 26, 45, 172, 175, 650, 653, 1158
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 7 cut(s) 26, 45, 172, 175, 650, 653, 1158
FspBI CTAG 1 cut(s) 783
GlaI GCGC 2 cut(s) 347, 656
GluI GCNGC 7 cut(s) 26, 45, 172, 175, 650, 653, 1158
GsaI CCCAGC 3 cut(s) 136, 841, 1121
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 7 cut(s) 47, 142, 177, 237, 901, 998, 1131
HapII CCGG 5 cut(s) 143, 297, 353, 704, 819
HhaI GCGC 2 cut(s) 348, 657
Hin1II CATG 5 cut(s) 364, 390, 713, 878, 1037
Hin6I GCGC 2 cut(s) 346, 655
HinP1I GCGC 2 cut(s) 346, 655
HinfI GANTC 9 cut(s) 107, 331, 373, 397, 589, 713, 1040, 1199, 1321
HpaII CCGG 5 cut(s) 143, 297, 353, 704, 819
HphI GGTGA 3 cut(s) 485, 833, 1264
Hpy166II GTNNAC 3 cut(s) 476, 580, 1306
Hpy188I TCNGA 8 cut(s) 122, 336, 378, 435, 484, 547, 790, 1221
Hpy188III TCNNGA 4 cut(s) 353, 704, 868, 1196
Hpy8I GTNNAC 3 cut(s) 476, 580, 1306
Hpy99I CGWCG 4 cut(s) 17, 107, 236, 287
HpyAV CCTTC 7 cut(s) 265, 331, 550, 934, 957, 1305, 1325
HpyCH4III ACNGT 2 cut(s) 597, 682
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 6 cut(s) 526, 1033, 1160, 1179, 1240, 1313
HpyF10VI GCNNNNNNNGC 4 cut(s) 293, 611, 620, 629
HpyF3I CTNAG 5 cut(s) 29, 461, 981, 1018, 1325
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 5 cut(s) 364, 390, 713, 878, 1037
HspAI GCGC 2 cut(s) 346, 655
Kpn2I TCCGGA 2 cut(s) 352, 703
Ksp22I TGATCA 1 cut(s) 1192
Kzo9I GATC 5 cut(s) 427, 571, 943, 1192, 1267
LmnI GCTCC 3 cut(s) 457, 815, 982
Lsp1109I GCAGC 4 cut(s) 37, 158, 639, 1144
LweI GCATC 5 cut(s) 316, 535, 569, 883, 1249
MaeI CTAG 1 cut(s) 783
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 2 cut(s) 911, 1252
MalI GATC 5 cut(s) 429, 573, 945, 1194, 1269
MboI GATC 5 cut(s) 427, 571, 943, 1192, 1267
MboII GAAGA 8 cut(s) 17, 379, 497, 842, 856, 1109, 1235, 1348
MhlI GDGCHC 1 cut(s) 961
MluCI AATT 7 cut(s) 502, 791, 802, 972, 1003, 1186, 1347
MlyI GAGTC 5 cut(s) 101, 325, 583, 1034, 1208
MmeI TCCRAC 3 cut(s) 100, 215, 579
Mph1103I ATGCAT 1 cut(s) 1242
MroI TCCGGA 2 cut(s) 352, 703
MseI TTAA 4 cut(s) 851, 1082, 1184, 1372
MslI CAYNNNNRTG 3 cut(s) 879, 1073, 1221
MspA1I CMGCKG 4 cut(s) 28, 171, 609, 652
MspI CCGG 5 cut(s) 143, 297, 353, 704, 819
MspR9I CCNGG 2 cut(s) 49, 718
Mva1269I GAATGC 1 cut(s) 1228
MvaI CCWGG 2 cut(s) 49, 718
MwoI GCNNNNNNNGC 4 cut(s) 293, 611, 620, 629
NdeII GATC 5 cut(s) 427, 571, 943, 1192, 1267
NlaIII CATG 5 cut(s) 364, 390, 713, 878, 1037
NlaIV GGNNCC 4 cut(s) 817, 872, 900, 999
NmuCI GTSAC 1 cut(s) 1252
NsiI ATGCAT 1 cut(s) 1242
NspI RCATGY 2 cut(s) 364, 390
PaqCI CACCTGC 1 cut(s) 221
PciI ACATGT 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 952
PctI GAATGC 1 cut(s) 1228
PfeI GAWTC 4 cut(s) 373, 397, 713, 1321
PkrI GCNGC 7 cut(s) 27, 46, 173, 176, 651, 654, 1159
PleI GAGTC 5 cut(s) 101, 325, 583, 1034, 1207
PpsI GAGTC 5 cut(s) 101, 325, 583, 1034, 1207
PscI ACATGT 1 cut(s) 386
Psp6I CCWGG 2 cut(s) 47, 716
PspFI CCCAGC 3 cut(s) 132, 837, 1117
PspGI CCWGG 2 cut(s) 47, 716
PspN4I GGNNCC 4 cut(s) 817, 872, 900, 999
PspPI GGNCC 5 cut(s) 145, 252, 706, 899, 997
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
PstI CTGCAG 1 cut(s) 1162
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 2 cut(s) 466, 771
RsaNI GTAC 2 cut(s) 465, 770
RseI CAYNNNNRTG 3 cut(s) 879, 1073, 1221
SaqAI TTAA 4 cut(s) 851, 1082, 1184, 1372
SatI GCNGC 7 cut(s) 26, 45, 172, 175, 650, 653, 1158
Sau3AI GATC 5 cut(s) 427, 571, 943, 1192, 1267
Sau96I GGNCC 5 cut(s) 145, 252, 706, 899, 997
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 5 cut(s) 101, 325, 583, 1034, 1208
ScrFI CCNGG 2 cut(s) 49, 718
SduI GDGCHC 1 cut(s) 961
SfaNI GCATC 5 cut(s) 316, 535, 569, 883, 1249
SfcI CTRYAG 2 cut(s) 1137, 1158
SinI GGWCC 3 cut(s) 145, 252, 706
SmiI ATTTAAAT 1 cut(s) 1083
SmiMI CAYNNNNRTG 3 cut(s) 879, 1073, 1221
SpeI ACTAGT 1 cut(s) 782
Sse9I AATT 7 cut(s) 502, 791, 802, 972, 1003, 1186, 1347
SsiI CCGC 7 cut(s) 44, 169, 174, 268, 609, 650, 896
SspMI CTAG 1 cut(s) 783
StyD4I CCNGG 2 cut(s) 47, 716
SwaI ATTTAAAT 1 cut(s) 1083
TaaI ACNGT 2 cut(s) 597, 682
TaiI ACGT 1 cut(s) 285
TaqI TCGA 4 cut(s) 365, 574, 891, 961
TasI AATT 7 cut(s) 502, 791, 802, 972, 1003, 1186, 1347
TatI WGTACW 1 cut(s) 464
TauI GCSGC 3 cut(s) 47, 177, 652
TfiI GAWTC 4 cut(s) 373, 397, 713, 1321
Tru1I TTAA 4 cut(s) 851, 1082, 1184, 1372
Tru9I TTAA 4 cut(s) 851, 1082, 1184, 1372
TseFI GTSAC 1 cut(s) 1252
TseI GCWGC 4 cut(s) 25, 171, 652, 1157
Tsp45I GTSAC 1 cut(s) 1252
TspDTI ATGAA 5 cut(s) 711, 726, 843, 1013, 1110
VpaK11BI GGWCC 3 cut(s) 145, 252, 706
XapI RAATTY 2 cut(s) 791, 1003
XceI RCATGY 2 cut(s) 364, 390
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 1 cut(s) 783
ZrmI AGTACT 1 cut(s) 466
Zsp2I ATGCAT 1 cut(s) 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.