FvH4_1g06070

Rit1 N-terminal domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
3238758 .. 3242038
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06070.t7

Sequence Viewer

Length: 1491 bp
ATGGAAGATGACGAGAATACTCATCAGCTGAGCATATACAGAGCCGCCAGAAGCATAAAGCGCAGGGACAATACCCTCTATAACGCGCTGAGATCCATCTACGACGACTCTGTTTTCGTCGGCGAGATTTTCCAGCTCTGGCCCGACCTCCCTCTCCTCGCCAACCTCCGATGTGGCCTCTGGTACTCCCCAACGTTCCACGCCACGTGTTACTTCAAGTCCACCGACGGCCACAACAACAACTGGTCCTTCAACACCTCCCGCCTCAACCTCCACGTCGCTCAGCTCGCAGGACAGAAGGGCGGGTGTTTCATTGTGGATGCAACTCGGAGAGGGAAGCGGTTCCCGGACAGCATGTCGAAGACGATTCCGATTTGGGCTTGTGTTTTGAACCGTTCGATTCATAACCATAGGGAAAGAATGCGGCAGATTGCTCTTGGGGAGTCGAGTGCTTGTGATAAACATTCTGTTGATACAAGACAGATGCCTGTTGATTGGGATTGTTCCTTGCATCTTCCGCTTTGGGTTTCCGGAACAGAGAGAGCTTCTATTGAGAAGCGATTAGAAGAATGGACTCAACAGTTGGATGCGAGTGGGGCTGATATTAGCTCTCTTGCTTCTTGTTTGAAAAAGCCTTTACGCCCTTTATGGATATCACAGAAAACTGTAATATGGTTGAATGAAGTTCCAGACCATGAGTCCTGGGATTTCACACCTATCATTCTTGTCTCGGCCTCATCCCCTAGTGGTGTTGTGCAATGCAGGACTAGTTCAGAATTTAGCTGGAATTATATACCGGGAGCTGGTGATGATGAAGAAAGTTGGGCAAGAGGTTTAACACCTAGTCTTTTCTGGAATCGTGCCTATGATATTATAAATGCAGGGCCTGAAATGTGTAATCAGATGGTGGCTGATATAGTTGAGAAGGATAGAGTGTCTCGTGCTCGAAGGGGACAGGATGCTCCTCAGGTCACTGTTAAGGCCCCAAATTTGGTACCGAGACCTGATCATTGTTTGAATAATGATGAGTCACAGTTAGCTACGGATATTGCAAACATGAATATCAATCGAAATTCGTCTGATGAAGATTCTGTTATATCTTGGCTTGGTTCGACTAACCTTGCTGTAGGCACATCTCAAAATGCCGGAGTATCTAAAGTTGACTGCATATTAAACTGTGATAAGGAGTCTATCTCTGCTGATCCTAAAGCATATTTACATCTTCCGATGCTGACATCAAAGTTTGATCGCTTCTCCTTGTTAAATAATCTCCCTTCTGCAGTGAACTTTGCAAAGTGGAACCTCAGCCAAGGGAAGACGCTTCTAATTTGTTGTGATAATGGCGAAGATATCAGCGTATGCGTCTGTCTGGCAATCTTGACAGCCTTATTTGATGATGAAGTTATACGCATATCTTTTTCTGTGGCTTCTAACCATGGACTAATGCAACTTTTTAAGGGGAACCTTCGATGGGGGAAACTTCTTCAGTGA

Protein Analysis

497

Amino Acids

55.68

Weight (kDa)

5.97

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rit1_C PF17184 1 - 190 7.1e-45 Rit1 N-terminal domain
Init_tRNA_PT PF04179 287 - 349 2.9e-17 Rit1 DUSP-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 875
Acc65I GGTACC 1 cut(s) 994
AccB1I GGYRCC 1 cut(s) 994
AccII CGCG 1 cut(s) 86
AccIII TCCGGA 1 cut(s) 530
AciI CCGC 6 cut(s) 45, 262, 303, 340, 424, 518
AclI AACGTT 1 cut(s) 194
AclWI GGATC 2 cut(s) 87, 1196
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 3 cut(s) 776, 988, 1072
AcuI CTGAAG 1 cut(s) 1469
AcvI CACGTG 1 cut(s) 207
AfaI GTAC 2 cut(s) 185, 996
AfiI CCNNNNNNNGG 3 cut(s) 803, 991, 1471
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 6 cut(s) 217, 253, 391, 628, 679, 1018
AhdI GACNNNNNGTC 2 cut(s) 355, 697
AhlI ACTAGT 1 cut(s) 767
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 701
AluBI AGCT 8 cut(s) 28, 136, 286, 545, 609, 783, 803, 1040
AluI AGCT 8 cut(s) 28, 136, 286, 545, 609, 783, 803, 1040
Alw21I GWGCWC 1 cut(s) 946
Alw26I GTCTC 3 cut(s) 733, 942, 994
AlwI GGATC 2 cut(s) 87, 1196
AlwNI CAGNNNCTG 1 cut(s) 887
Aor13HI TCCGGA 1 cut(s) 530
AoxI GGCC 6 cut(s) 140, 175, 229, 732, 884, 981
ApoI RAATTY 3 cut(s) 776, 988, 1072
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 1 cut(s) 341
Asp718I GGTACC 1 cut(s) 994
AspLEI GCGC 2 cut(s) 63, 88
AspS9I GGNCC 4 cut(s) 141, 246, 884, 982
AsuC2I CCSGG 2 cut(s) 347, 798
AsuHPI GGTGA 1 cut(s) 818
AvaII GGWCC 1 cut(s) 246
AxyI CCTNAGG 1 cut(s) 966
BanI GGYRCC 1 cut(s) 994
BauI CACGAG 1 cut(s) 939
BbrPI CACGTG 1 cut(s) 207
BbsI GAAGAC 2 cut(s) 368, 1322
Bbv12I GWGCWC 1 cut(s) 946
BbvCI CCTCAGC 1 cut(s) 1304
BccI CCATC 3 cut(s) 104, 898, 1464
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 703
BclI TGATCA 1 cut(s) 1006
BcnI CCSGG 2 cut(s) 347, 798
BcoDI GTCTC 3 cut(s) 733, 942, 994
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 3 cut(s) 744, 768, 843
BfmI CTRYAG 2 cut(s) 1125, 1278
BisI GCNGC 2 cut(s) 45, 425
BlpI GCTNAGC 2 cut(s) 29, 282
BlsI GCNGC 2 cut(s) 46, 426
Bme1390I CCNGG 3 cut(s) 347, 703, 798
Bme18I GGWCC 1 cut(s) 246
BmeRI GACNNNNNGTC 2 cut(s) 355, 697
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 4 cut(s) 141, 246, 884, 982
BmiI GGNNCC 5 cut(s) 344, 984, 996, 1301, 1463
BmrFI CCNGG 3 cut(s) 347, 703, 798
BmsI GCATC 6 cut(s) 310, 474, 520, 577, 949, 1218
BpiI GAAGAC 2 cut(s) 368, 1322
BplI GAGNNNNNCTC 2 cut(s) 1178, 1210
Bpu10I CCTNAGC 1 cut(s) 1304
Bpu1102I GCTNAGC 2 cut(s) 29, 282
BpuMI CCSGG 2 cut(s) 347, 798
BsaAI YACGTR 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 994
BsaJI CCNNGG 3 cut(s) 702, 1309, 1435
BsaWI WCCGGW 1 cut(s) 530
Bsc4I CCNNNNNNNGG 3 cut(s) 803, 991, 1471
Bse1I ACTGG 1 cut(s) 248
Bse21I CCTNAGG 1 cut(s) 966
Bse3DI GCAATG 1 cut(s) 764
BseAI TCCGGA 1 cut(s) 530
BseBI CCWGG 1 cut(s) 703
BseDI CCNNGG 3 cut(s) 702, 1309, 1435
BseGI GGATG 4 cut(s) 325, 592, 737, 964
BseLI CCNNNNNNNGG 3 cut(s) 803, 991, 1471
BseMI GCAATG 1 cut(s) 764
BseMII CTCAG 5 cut(s) 20, 80, 296, 980, 1318
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 2 cut(s) 146, 954
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 6 cut(s) 142, 177, 231, 734, 886, 983
BshNI GGYRCC 1 cut(s) 994
BsiHKAI GWGCWC 1 cut(s) 946
BsiSI CCGG 4 cut(s) 347, 531, 797, 1146
BslFI GGGAC 2 cut(s) 80, 966
BslI CCNNNNNNNGG 3 cut(s) 803, 991, 1471
BsmAI GTCTC 3 cut(s) 733, 942, 994
BsmFI GGGAC 2 cut(s) 80, 966
BsmI GAATGC 1 cut(s) 426
BsnI GGCC 6 cut(s) 142, 177, 231, 734, 886, 983
Bso31I GGTCTC 1 cut(s) 994
Bsp1286I GDGCHC 1 cut(s) 946
Bsp13I TCCGGA 1 cut(s) 530
Bsp143I GATC 4 cut(s) 92, 1006, 1201, 1246
Bsp1720I GCTNAGC 2 cut(s) 29, 282
Bsp19I CCATGG 1 cut(s) 1435
BspACI CCGC 6 cut(s) 45, 262, 303, 340, 424, 518
BspANI GGCC 6 cut(s) 142, 177, 231, 734, 886, 983
BspCNI CTCAG 5 cut(s) 21, 81, 295, 979, 1317
BspEI TCCGGA 1 cut(s) 530
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 5 cut(s) 344, 984, 996, 1301, 1463
BspMAI CTGCAG 1 cut(s) 1282
BspPI GGATC 2 cut(s) 87, 1196
BspT107I GGYRCC 1 cut(s) 994
BspTNI GGTCTC 1 cut(s) 994
BsrDI GCAATG 1 cut(s) 764
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 702, 1309, 1435
BssMI GATC 4 cut(s) 92, 1006, 1201, 1246
BssSI CACGAG 1 cut(s) 939
BssT1I CCWWGG 2 cut(s) 1309, 1435
Bst2BI CACGAG 1 cut(s) 939
Bst2UI CCWGG 1 cut(s) 703
Bst4CI ACNGT 6 cut(s) 395, 582, 667, 976, 1035, 1178
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 5 cut(s) 29, 89, 282, 966, 1304
BstDSI CCRYGG 1 cut(s) 1435
BstF5I GGATG 4 cut(s) 325, 592, 737, 964
BstFNI CGCG 1 cut(s) 86
BstHHI GCGC 2 cut(s) 63, 88
BstKTI GATC 4 cut(s) 95, 1009, 1204, 1249
BstMAI GTCTC 3 cut(s) 733, 942, 994
BstMBI GATC 4 cut(s) 92, 1006, 1201, 1246
BstMWI GCNNNNNNNGC 4 cut(s) 60, 287, 517, 596
BstNI CCWGG 1 cut(s) 703
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 3 cut(s) 345, 701, 796
BstSFI CTRYAG 2 cut(s) 1125, 1278
BstUI CGCG 1 cut(s) 86
BstV2I GAAGAC 2 cut(s) 368, 1322
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
Bsu36I CCTNAGG 1 cut(s) 966
BsuRI GGCC 6 cut(s) 142, 177, 231, 734, 886, 983
BtgI CCRYGG 1 cut(s) 1435
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 4 cut(s) 325, 592, 737, 964
BtsI GCAGTG 1 cut(s) 1287
BtsIMutI CAGTG 2 cut(s) 972, 1287
Cac8I GCNNGC 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 887
CfoI GCGC 2 cut(s) 63, 88
Cfr13I GGNCC 4 cut(s) 141, 246, 884, 982
CseI GACGC 2 cut(s) 1327, 1351
Csp6I GTAC 2 cut(s) 184, 995
CviAII CATG 4 cut(s) 355, 695, 1057, 1436
CviQI GTAC 2 cut(s) 184, 995
DdeI CTNAG 5 cut(s) 29, 89, 282, 966, 1304
DpnI GATC 4 cut(s) 94, 1008, 1203, 1248
DpnII GATC 4 cut(s) 92, 1006, 1201, 1246
DriI GACNNNNNGTC 2 cut(s) 355, 697
EaeI YGGCCR 1 cut(s) 229
Eam1105I GACNNNNNGTC 2 cut(s) 355, 697
Eco130I CCWWGG 2 cut(s) 1309, 1435
Eco31I GGTCTC 1 cut(s) 994
Eco32I GATATC 2 cut(s) 654, 1351
Eco47I GGWCC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 1469
Eco72I CACGTG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 966
EcoO109I RGGNCCY 2 cut(s) 884, 982
EcoRII CCWGG 1 cut(s) 701
EcoRV GATATC 2 cut(s) 654, 1351
EcoT14I CCWWGG 2 cut(s) 1309, 1435
ErhI CCWWGG 2 cut(s) 1309, 1435
FaeI CATG 4 cut(s) 358, 698, 1060, 1439
FaqI GGGAC 2 cut(s) 80, 966
FatI CATG 4 cut(s) 354, 694, 1056, 1435
FauI CCCGC 2 cut(s) 269, 296
FbaI TGATCA 1 cut(s) 1006
Fnu4HI GCNGC 2 cut(s) 45, 425
FokI GGATG 4 cut(s) 332, 599, 724, 971
Fsp4HI GCNGC 2 cut(s) 45, 425
FspBI CTAG 3 cut(s) 744, 768, 843
GlaI GCGC 2 cut(s) 62, 87
GluI GCNGC 2 cut(s) 45, 425
HaeIII GGCC 6 cut(s) 142, 177, 231, 734, 886, 983
HapII CCGG 4 cut(s) 347, 531, 797, 1146
HgaI GACGC 2 cut(s) 1327, 1351
HhaI GCGC 2 cut(s) 63, 88
Hin1II CATG 4 cut(s) 358, 698, 1060, 1439
Hin6I GCGC 2 cut(s) 61, 86
HinP1I GCGC 2 cut(s) 61, 86
HincII GTYRAC 1 cut(s) 1162
HindII GTYRAC 1 cut(s) 1162
HpaII CCGG 4 cut(s) 347, 531, 797, 1146
HphI GGTGA 1 cut(s) 818
Hpy166II GTNNAC 3 cut(s) 222, 1162, 1285
Hpy188I TCNGA 7 cut(s) 170, 330, 372, 775, 903, 1081, 1227
Hpy188III TCNNGA 4 cut(s) 531, 689, 853, 1378
Hpy8I GTNNAC 3 cut(s) 222, 1162, 1285
Hpy99I CGWCG 4 cut(s) 107, 122, 230, 281
HpyAV CCTTC 6 cut(s) 259, 292, 919, 942, 1284, 1475
HpyCH4III ACNGT 6 cut(s) 395, 582, 667, 976, 1035, 1178
HpyCH4IV ACGT 3 cut(s) 194, 206, 276
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 287, 517, 596
HpyF3I CTNAG 5 cut(s) 29, 89, 282, 966, 1304
HpySE526I ACGT 3 cut(s) 194, 206, 276
Hsp92II CATG 4 cut(s) 358, 698, 1060, 1439
HspAI GCGC 2 cut(s) 61, 86
Kpn2I TCCGGA 1 cut(s) 530
KpnI GGTACC 1 cut(s) 998
Ksp22I TGATCA 1 cut(s) 1006
Kzo9I GATC 4 cut(s) 92, 1006, 1201, 1246
LmnI GCTCC 2 cut(s) 800, 967
LweI GCATC 6 cut(s) 310, 474, 520, 577, 949, 1218
MaeI CTAG 3 cut(s) 744, 768, 843
MaeII ACGT 3 cut(s) 194, 206, 276
MaeIII GTNAC 3 cut(s) 209, 970, 1029
MalI GATC 4 cut(s) 94, 1008, 1203, 1248
MboI GATC 4 cut(s) 92, 1006, 1201, 1246
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 946
MluCI AATT 5 cut(s) 776, 787, 988, 1072, 1326
MlyI GAGTC 6 cut(s) 101, 452, 568, 707, 1037, 1196
MmeI TCCRAC 1 cut(s) 564
MroI TCCGGA 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 5 cut(s) 836, 978, 1172, 1262, 1455
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 4 cut(s) 347, 531, 797, 1146
MspR9I CCNGG 3 cut(s) 347, 703, 798
Mva1269I GAATGC 1 cut(s) 426
MvaI CCWGG 1 cut(s) 703
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 4 cut(s) 60, 287, 517, 596
NciI CCSGG 2 cut(s) 347, 798
NcoI CCATGG 1 cut(s) 1435
NdeII GATC 4 cut(s) 92, 1006, 1201, 1246
NlaIII CATG 4 cut(s) 358, 698, 1060, 1439
NlaIV GGNNCC 5 cut(s) 344, 984, 996, 1301, 1463
NmeAIII GCCGAG 1 cut(s) 710
NmuCI GTSAC 2 cut(s) 970, 1029
NspI RCATGY 1 cut(s) 358
PctI GAATGC 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 4 cut(s) 367, 400, 856, 1088
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 2 cut(s) 46, 426
PleI GAGTC 6 cut(s) 101, 451, 568, 706, 1036, 1195
PmaCI CACGTG 1 cut(s) 207
PmlI CACGTG 1 cut(s) 207
PpsI GAGTC 6 cut(s) 101, 451, 568, 706, 1036, 1195
Ppu21I YACGTR 1 cut(s) 207
PsiI TTATAA 1 cut(s) 875
Psp1406I AACGTT 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 701
PspCI CACGTG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 701
PspN4I GGNNCC 5 cut(s) 344, 984, 996, 1301, 1463
PspPI GGNCC 4 cut(s) 141, 246, 884, 982
PstI CTGCAG 1 cut(s) 1282
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 2 cut(s) 185, 996
RsaNI GTAC 2 cut(s) 184, 995
SaqAI TTAA 5 cut(s) 836, 978, 1172, 1262, 1455
SatI GCNGC 2 cut(s) 45, 425
Sau3AI GATC 4 cut(s) 92, 1006, 1201, 1246
Sau96I GGNCC 4 cut(s) 141, 246, 884, 982
SchI GAGTC 6 cut(s) 101, 452, 568, 707, 1037, 1196
ScrFI CCNGG 3 cut(s) 347, 703, 798
SduI GDGCHC 1 cut(s) 946
SfaNI GCATC 6 cut(s) 310, 474, 520, 577, 949, 1218
SfcI CTRYAG 2 cut(s) 1125, 1278
SinI GGWCC 1 cut(s) 246
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 5 cut(s) 776, 787, 988, 1072, 1326
SsiI CCGC 6 cut(s) 45, 262, 303, 340, 424, 518
SspMI CTAG 3 cut(s) 744, 768, 843
StyD4I CCNGG 3 cut(s) 345, 701, 796
StyI CCWWGG 2 cut(s) 1309, 1435
TaaI ACNGT 6 cut(s) 395, 582, 667, 976, 1035, 1178
TaiI ACGT 3 cut(s) 197, 209, 279
TaqI TCGA 7 cut(s) 359, 398, 446, 946, 1069, 1112, 1468
TasI AATT 5 cut(s) 776, 787, 988, 1072, 1326
TauI GCSGC 2 cut(s) 47, 427
TfiI GAWTC 4 cut(s) 367, 400, 856, 1088
Tru1I TTAA 5 cut(s) 836, 978, 1172, 1262, 1455
Tru9I TTAA 5 cut(s) 836, 978, 1172, 1262, 1455
TscAI CASTG 2 cut(s) 979, 1287
TseFI GTSAC 2 cut(s) 970, 1029
Tsp45I GTSAC 2 cut(s) 970, 1029
TspDTI ATGAA 7 cut(s) 301, 392, 696, 828, 1073, 1098, 1413
TspGWI ACGGA 1 cut(s) 1058
TspRI CASTG 2 cut(s) 979, 1287
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 3 cut(s) 776, 988, 1072
XceI RCATGY 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 3 cut(s) 744, 768, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.