Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003887

Physical Location & Seq

Genomic Coordinates Reverse (-)

1740328 .. 1745392

Gene Structure 5065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0021400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGGGGGCAACTATTCTCCCAGATCTCGGGGCGGAGATTCTGATTCCGTTCTGCGCGGTGGTCGGAATCGTGTTCTCGCTGCTCCAGTGGGTGTACGTGTCACGCGTCCAGCTCTCGCCGGCGAGGGACTCCAACTCTAACTCCGCCGCAAAAAATGGTTACAACGATTACCTGATTGAGGAGGAAGAGGGTGTTAACGACACCAACGTTGTTCAGAAGTGCGCCGAAATCCAGAACGCCATCTCTGAAGGAGCAACATCATTCCTTTTCACGGAATATAAGTATGTTGGTGCTTTTATGGTGGCTTTTGCAGTCTTGATATTTGTTTTCCTTGGCTCCGTGGAGGGATTTAGCACTAGTAGCCATACATGTGCTTATGATGAAACAAAGATATGCAAACCTGCTCTTGCAACTGCCATATTCAGTACCATTTCCTTTTTGCTTGGTGCTATAACTTCAGTGGTTTCTGGATTCCTTGGTATGAAGATTGCCACGTATGCAAATGCCAGAACTACTTTGGAGGCAAGAAAAGGTGTTGGGAAGGCTTTTATAGTAGCATTTAGATCAGGTGCTGTCATGGGATTTCTCCTTGCTGCAAATGGTTTATTAGTTTTATACATTGTGATCCTCGTCTTCAAGATGTACTATGGTGAGGATTGGGGTGGTCTTTTTGAGTCCATAACTGGGTATGGTCTTGGTGGATCTTCCATGGCTCTTTTTGGCAGAGTTGGTGGAGGCATCTATACCAAAGCTGCTGATGTTGGTGCTGATCTTGTTGGCAAAGTTGAAAGGAATATTCCTGAGGATGACCCAAGGAACCCAGCTGTGATTGCTGATAATGTTGGTGACAATGTTGGGGATATTGCTGGAATGGGATCTGATCTGTTTGGATCCTATGCTGAGTCATCATGTGCTGCTCTTGTTGTTGCTTCAATTTCCTCGTTTGGGATCAATCATGAATTAACTGCAATGTTATATCCTCTCATTGTCAGTTCCATTGGTATCATTGTTTGTCTGATCACCACCCTTTTCGCAACTGATTTCTTTGAGATCAAGGCTGTAAAGGAAATTGAGCCAGCATTGAAGAAGCAACTCATTATTTCCACAGTACTGATGACTGTTGGAGTTGCAATTGTTACATGGATTTCTGTTCCTTCTTCCTTCACCATCTTCAATTTTGGAACACAGAAAGTTGTTAAGAACTGGCAGCTGTTCTTATGTGTGTGTGTTGGGTTGTGGGCTGGGCTTATCATCGGATTTGTGACAGAGTATTATACCAGTAATGCATACAGCCCTGTGCAAGATGTTGCTGATTCGTGCCGGACAGGAGCTGCTACTAATATCATTTTTGGCCTGGCATTGGGATACAAATCTGTCATTATTCCTATTTTTGCCATTGCTGTTAGTATTTTTGTTAGTTTTAGCTTTGCCGCCATGTATGGCATTGCTGTAGCCGCCCTTGGAATGCTGAGCACCATAGCAACTGGATTGGCCATTGATGCATATGGTCCGATCAGTGACAATGCTGGTGGCATTGCTGAGATGGCAGGCATGAGCCACAGAATCAGAGAGAGAACTGATGCTCTTGATGCTGCAGGAAACACAACGGCTGCTATTGGAAAGGGTTTTGCAATTGGCTCCGCTGCTCTTGTGTCCCTTGCTCTCTTTGGTGCCTTTGTGAGCCGTGCTGGAATTGCAACAGTTGATGTGTTGACTCCAAAAGTGTTCATTGGTTTGATAGTGGGTGCGATGCTTCCCTATTGGTTCTCTGCCATGACAATGAAGAGTGTGGGAAGTGCTGCTCTAAAGATGGTTGAAGAAGTACGCAGGCAATTCAACACCATCCCTGGCCTTATGGAGGGTACTGCTAAACCTGACTATGCTACTTGCGTCAAGATCTCGACTGATGCTTCCATCAAGGAAATGATCCCTCCTGGTGCCCTTGTCATGCTAACACCCCTCATTGTCGGAATCTTTTTTGGTGTGGAGACTCTCTCTGGTGTCCTTGCTGGATCCCTCGTCTCTGGTGTACAGATCGCCATCTCTGCATCCAACACCGGTGGCGCTTGGGACAATGCCAAGAAGTATATTGAGGCCGGGGCTTCAGAACATGCAAGGACTCTTGGTCCCAAGGGATCAGATCCACACAAAGCAGCTGTCATTGGTGACACCGTCGGAGACCCTCTCAAGGACACATCCGGCCCATCTCTCAACATCCTCATCAAGCTGATGGCTGTCGAGTCCCTAGTGTTTGCACCTTTCTTCGCCACACATGGCGGTCTCCTTTTCAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0019988 GO:0034470 GO:0034641 GO:0034660 GO:0036211 GO:0043170 GO:0043399 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Init_tRNA_PT Rit1_C

Protein Analysis

765

Amino Acids

80.16

Weight (kDa)

5.18

Isoelectric Point (pI)

22.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	63 - 751	7.4e-258	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40570 AT2G40570 AT2G40570
fragaria_vesca	FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070
malus_domestica	MD02G1065300.v1.1 MD15G1196200.v1.1
prunus_persica	Prupe.7G220200_v2.0.a1 Prupe.7G220200_v2.0.a1 Prupe.7G220200_v2.0.a1
pyrus_communis	pycom02g05140
rosa_chinensis	RchiOBHm_Chr2g0091831
rosa_laevigata	RLG00000016255
rosa_multiflora	Rmu_sc0021402.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149700
rosa_rugosa	Rorug02G0021400
rosa_samantha	Rh2AG066000 Rh2BG065500 Rh2CG066900 Rh2DG065100
rosa_wichuraiana	Rw2G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccB1I	GGYRCC	2 cut(s)	1670, 1937
AccII	CGCG	2 cut(s)	56, 105
AciI	CCGC	8 cut(s)	32, 56, 144, 147, 1431, 1455, 1641, 2277
AclI	AACGTT	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	1491
AcuI	CTGAAG	3 cut(s)	267, 441, 2088
AfaI	GTAC	7 cut(s)	95, 427, 644, 1110, 1824, 1864, 2031
AfiI	CCNNNNNNNGG	8 cut(s)	26, 178, 271, 684, 945, 1360, 1858, 2188
AflIII	ACRYGT	3 cut(s)	96, 103, 368
AgeI	ACCGGT	1 cut(s)	2057
AgsI	TTSAA	8 cut(s)	637, 788, 933, 1084, 1174, 1817, 1837, 2290
AhdI	GACNNNNNGTC	1 cut(s)	2124
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	3 cut(s)	1353, 1846, 1933
AluBI	AGCT	9 cut(s)	112, 752, 824, 1210, 1331, 1425, 2156, 2227, 2293
AluI	AGCT	9 cut(s)	112, 752, 824, 1210, 1331, 1425, 2156, 2227, 2293
Alw21I	GWGCWC	1 cut(s)	1475
Alw26I	GTCTC	4 cut(s)	1982, 2026, 2172, 2285
AlwNI	CAGNNNCTG	2 cut(s)	572, 1331
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	5 cut(s)	1351, 1491, 1849, 2094, 2200
ArsI	GACNNNNNNTTYG	2 cut(s)	2142, 2174
AsiGI	ACCGGT	1 cut(s)	2057
AspLEI	GCGC	3 cut(s)	56, 224, 2066
AspS9I	GGNCC	3 cut(s)	1508, 2126, 2201
AsuC2I	CCSGG	1 cut(s)	2098
AsuHPI	GGTGA	5 cut(s)	662, 857, 1012, 1156, 2177
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	1508, 2126
AxyI	CCTNAGG	1 cut(s)	801
BaeGI	GKGCMC	1 cut(s)	1942
BalI	TGGCCA	1 cut(s)	1493
BamHI	GGATCC	2 cut(s)	890, 2012
BanI	GGYRCC	2 cut(s)	1670, 1937
BbsI	GAAGAC	1 cut(s)	625
Bbv12I	GWGCWC	1 cut(s)	1475
BccI	CCATC	9 cut(s)	248, 1175, 1537, 1804, 1850, 1922, 2048, 2212, 2224
BceAI	ACGGC	2 cut(s)	1623, 1668
BciT130I	CCWGG	3 cut(s)	1355, 1848, 1935
BciVI	GTATCC	1 cut(s)	1358
BclI	TGATCA	1 cut(s)	1017
BcnI	CCSGG	1 cut(s)	2098
BcoDI	GTCTC	4 cut(s)	1982, 2026, 2172, 2285
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	2 cut(s)	357, 2246
BfmI	CTRYAG	2 cut(s)	1449, 1593
BfoI	RGCGCY	1 cut(s)	2067
BfuAI	ACCTGC	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	1358
BglII	AGATCT	2 cut(s)	22, 1896
BlpI	GCTNAGC	1 cut(s)	1469
BmcAI	AGTACT	1 cut(s)	1110
Bme1390I	CCNGG	4 cut(s)	1355, 1848, 1935, 2098
Bme18I	GGWCC	2 cut(s)	1508, 2126
BmeRI	GACNNNNNGTC	1 cut(s)	2124
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	3 cut(s)	1508, 2126, 2201
BmiI	GGNNCC	8 cut(s)	337, 818, 892, 1639, 1672, 1939, 2014, 2128
BmrFI	CCNGG	4 cut(s)	1355, 1848, 1935, 2098
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	7 cut(s)	747, 1489, 1570, 1579, 1740, 1897, 2057
BmuI	ACTGGG	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	625
BplI	GAGNNNNNCTC	4 cut(s)	1979, 2011, 2169, 2201
BpmI	CTGGAG	1 cut(s)	68
Bpu1102I	GCTNAGC	1 cut(s)	1469
BpuEI	CTTGAG	1 cut(s)	2171
BpuMI	CCSGG	1 cut(s)	2098
BsaAI	YACGTR	2 cut(s)	97, 495
BsaBI	GATNNNNATC	2 cut(s)	1369, 2039
BsaI	GGTCTC	2 cut(s)	2172, 2285
BsaJI	CCNNGG	9 cut(s)	331, 339, 475, 708, 812, 1459, 1846, 2097, 2130
BsaWI	WCCGGW	1 cut(s)	2057
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	8 cut(s)	26, 178, 271, 684, 945, 1360, 1858, 2188
Bse118I	RCCGGY	2 cut(s)	118, 2057
Bse1I	ACTGG	5 cut(s)	85, 688, 1208, 1278, 1489
Bse21I	CCTNAGG	1 cut(s)	801
Bse3DI	GCAATG	4 cut(s)	975, 1395, 1443, 1533
Bse8I	GATNNNNATC	2 cut(s)	1369, 2039
BseBI	CCWGG	3 cut(s)	1355, 1848, 1935
BseDI	CCNNGG	9 cut(s)	331, 339, 475, 708, 812, 1459, 1846, 2097, 2130
BseGI	GGATG	5 cut(s)	811, 1842, 2048, 2195, 2214
BseJI	GATNNNNATC	2 cut(s)	1369, 2039
BseLI	CCNNNNNNNGG	8 cut(s)	26, 178, 271, 684, 945, 1360, 1858, 2188
BseMI	GCAATG	4 cut(s)	975, 1395, 1443, 1533
BseMII	CTCAG	4 cut(s)	792, 891, 1460, 1530
BseNI	ACTGG	5 cut(s)	85, 688, 1208, 1278, 1489
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	1942
BseYI	CCCAGC	2 cut(s)	820, 1241
Bsh1236I	CGCG	2 cut(s)	56, 105
BshFI	GGCC	5 cut(s)	1353, 1493, 1851, 2096, 2202
BshNI	GGYRCC	2 cut(s)	1670, 1937
BshTI	ACCGGT	1 cut(s)	2057
BsiHKAI	GWGCWC	1 cut(s)	1475
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	5 cut(s)	119, 1321, 2058, 2097, 2199
BslFI	GGGAC	5 cut(s)	140, 1639, 2084, 2112, 2227
BslI	CCNNNNNNNGG	8 cut(s)	26, 178, 271, 684, 945, 1360, 1858, 2188
BsmAI	GTCTC	4 cut(s)	1982, 2026, 2172, 2285
BsmBI	CGTCTC	1 cut(s)	2026
BsmFI	GGGAC	5 cut(s)	140, 1639, 2084, 2112, 2227
BsmI	GAATGC	1 cut(s)	1470
BsnI	GGCC	5 cut(s)	1353, 1493, 1851, 2096, 2202
Bso31I	GGTCTC	2 cut(s)	2172, 2285
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	1475, 1942
Bsp1407I	TGTACA	1 cut(s)	2029
Bsp1720I	GCTNAGC	1 cut(s)	1469
Bsp19I	CCATGG	1 cut(s)	708
BspACI	CCGC	8 cut(s)	32, 56, 144, 147, 1431, 1455, 1641, 2277
BspANI	GGCC	5 cut(s)	1353, 1493, 1851, 2096, 2202
BspCNI	CTCAG	4 cut(s)	793, 892, 1461, 1531
BspFNI	CGCG	2 cut(s)	56, 105
BspHI	TCATGA	1 cut(s)	955
BspLI	GGNNCC	8 cut(s)	337, 818, 892, 1639, 1672, 1939, 2014, 2128
BspMAI	CTGCAG	1 cut(s)	1597
BspMI	ACCTGC	1 cut(s)	409
BspT107I	GGYRCC	2 cut(s)	1670, 1937
BspTNI	GGTCTC	2 cut(s)	2172, 2285
BsrDI	GCAATG	4 cut(s)	975, 1395, 1443, 1533
BsrFI	RCCGGY	2 cut(s)	118, 2057
BsrGI	TGTACA	1 cut(s)	2029
BsrI	ACTGG	5 cut(s)	85, 688, 1208, 1278, 1489
BssAI	RCCGGY	2 cut(s)	118, 2057
BssECI	CCNNGG	9 cut(s)	331, 339, 475, 708, 812, 1459, 1846, 2097, 2130
BssT1I	CCWWGG	6 cut(s)	331, 475, 708, 812, 1459, 2130
Bst2UI	CCWGG	3 cut(s)	1355, 1848, 1935
Bst4CI	ACNGT	4 cut(s)	1108, 1120, 1702, 2173
Bst6I	CTCTTC	2 cut(s)	180, 1778
BstAUI	TGTACA	1 cut(s)	2029
BstBAI	YACGTR	2 cut(s)	97, 495
BstC8I	GCNNGC	4 cut(s)	120, 1077, 1549, 1829
BstDEI	CTNAG	4 cut(s)	801, 900, 1469, 1539
BstDSI	CCRYGG	2 cut(s)	339, 708
BstENI	CCTNNNNNAGG	2 cut(s)	176, 1856
BstF5I	GGATG	5 cut(s)	811, 1842, 2048, 2195, 2214
BstFNI	CGCG	2 cut(s)	56, 105
BstH2I	RGCGCY	1 cut(s)	2067
BstHHI	GCGC	3 cut(s)	56, 224, 2066
BstMAI	GTCTC	4 cut(s)	1982, 2026, 2172, 2285
BstMWI	GCNNNNNNNGC	9 cut(s)	360, 497, 830, 1454, 1499, 1544, 1589, 1694, 2045
BstNI	CCWGG	3 cut(s)	1355, 1848, 1935
BstNSI	RCATGY	2 cut(s)	372, 2114
BstSCI	CCNGG	4 cut(s)	1353, 1846, 1933, 2096
BstSFI	CTRYAG	2 cut(s)	1449, 1593
BstSLI	GKGCMC	1 cut(s)	1942
BstUI	CGCG	2 cut(s)	56, 105
BstV2I	GAAGAC	1 cut(s)	625
BstX2I	RGATCY	7 cut(s)	22, 701, 875, 890, 1896, 2012, 2140
BstYI	RGATCY	7 cut(s)	22, 701, 875, 890, 1896, 2012, 2140
Bsu36I	CCTNAGG	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	1358
BsuRI	GGCC	5 cut(s)	1353, 1493, 1851, 2096, 2202
BtgI	CCRYGG	2 cut(s)	339, 708
BtgZI	GCGATG	1 cut(s)	1763
BtsCI	GGATG	5 cut(s)	811, 1842, 2048, 2195, 2214
BtsIMutI	CAGTG	3 cut(s)	92, 465, 1522
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	4 cut(s)	120, 1077, 1549, 1829
CaiI	CAGNNNCTG	2 cut(s)	572, 1331
CciI	TCATGA	1 cut(s)	955
CfoI	GCGC	3 cut(s)	56, 224, 2066
Cfr10I	RCCGGY	2 cut(s)	118, 2057
Cfr13I	GGNCC	3 cut(s)	1508, 2126, 2201
CseI	GACGC	2 cut(s)	94, 1879
Csp6I	GTAC	7 cut(s)	94, 426, 643, 1109, 1823, 1863, 2030
CspAI	ACCGGT	1 cut(s)	2057
CspCI	CAANNNNNGTGG	4 cut(s)	1510, 1545, 2041, 2076
CviQI	GTAC	7 cut(s)	94, 426, 643, 1109, 1823, 1863, 2030
DdeI	CTNAG	4 cut(s)	801, 900, 1469, 1539
DriI	GACNNNNNGTC	1 cut(s)	2124
EaeI	YGGCCR	1 cut(s)	1491
Eam1104I	CTCTTC	2 cut(s)	180, 1778
Eam1105I	GACNNNNNGTC	1 cut(s)	2124
EarI	CTCTTC	2 cut(s)	180, 1778
EciI	GGCGGA	2 cut(s)	47, 133
Eco130I	CCWWGG	6 cut(s)	331, 475, 708, 812, 1459, 2130
Eco31I	GGTCTC	2 cut(s)	2172, 2285
Eco47I	GGWCC	2 cut(s)	1508, 2126
Eco57I	CTGAAG	3 cut(s)	267, 441, 2088
Eco81I	CCTNAGG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	26
EcoNI	CCTNNNNNAGG	2 cut(s)	176, 1856
EcoRII	CCWGG	3 cut(s)	1353, 1846, 1933
EcoT14I	CCWWGG	6 cut(s)	331, 475, 708, 812, 1459, 2130
EcoT22I	ATGCAT	2 cut(s)	1288, 1504
ErhI	CCWWGG	6 cut(s)	331, 475, 708, 812, 1459, 2130
Esp3I	CGTCTC	1 cut(s)	2026
FaqI	GGGAC	5 cut(s)	140, 1639, 2084, 2112, 2227
FauNDI	CATATG	1 cut(s)	1504
FbaI	TGATCA	1 cut(s)	1017
FokI	GGATG	5 cut(s)	818, 1829, 2035, 2182, 2201
FspBI	CTAG	2 cut(s)	357, 2246
GlaI	GCGC	3 cut(s)	55, 223, 2065
GsaI	CCCAGC	2 cut(s)	824, 1245
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	2067
HaeIII	GGCC	5 cut(s)	1353, 1493, 1851, 2096, 2202
HapII	CCGG	5 cut(s)	119, 1321, 2058, 2097, 2199
HgaI	GACGC	2 cut(s)	94, 1879
HhaI	GCGC	3 cut(s)	56, 224, 2066
Hin6I	GCGC	3 cut(s)	54, 222, 2064
HinP1I	GCGC	3 cut(s)	54, 222, 2064
HincII	GTYRAC	2 cut(s)	196, 1713
HindII	GTYRAC	2 cut(s)	196, 1713
HindIII	AAGCTT	1 cut(s)	2291
HpaI	GTTAAC	1 cut(s)	196
HpaII	CCGG	5 cut(s)	119, 1321, 2058, 2097, 2199
HphI	GGTGA	5 cut(s)	662, 857, 1012, 1156, 2177
Hpy166II	GTNNAC	4 cut(s)	94, 196, 1713, 2030
Hpy188III	TCNNGA	9 cut(s)	232, 316, 468, 637, 800, 956, 1586, 1894, 1900
Hpy8I	GTNNAC	4 cut(s)	94, 196, 1713, 2030
Hpy99I	CGWCG	1 cut(s)	2177
HpyAV	CCTTC	4 cut(s)	242, 535, 1164, 1171
HpyCH4III	ACNGT	4 cut(s)	1108, 1120, 1702, 2173
HpyCH4IV	ACGT	3 cut(s)	96, 207, 494
HpyF10VI	GCNNNNNNNGC	9 cut(s)	360, 497, 830, 1454, 1499, 1544, 1589, 1694, 2045
HpyF3I	CTNAG	4 cut(s)	801, 900, 1469, 1539
HpySE526I	ACGT	3 cut(s)	96, 207, 494
HspAI	GCGC	3 cut(s)	54, 222, 2064
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	1017
KspAI	GTTAAC	1 cut(s)	196
LmnI	GCTCC	5 cut(s)	87, 251, 341, 1328, 1643
LweI	GCATC	7 cut(s)	747, 1489, 1570, 1579, 1740, 1897, 2057
MaeI	CTAG	2 cut(s)	357, 2246
MaeII	ACGT	3 cut(s)	96, 207, 494
MaeIII	GTNAC	7 cut(s)	99, 158, 845, 1135, 1261, 1517, 2165
MfeI	CAATTG	2 cut(s)	1131, 1632
MflI	RGATCY	7 cut(s)	22, 701, 875, 890, 1896, 2012, 2140
MhlI	GDGCHC	2 cut(s)	1475, 1942
MlsI	TGGCCA	1 cut(s)	1493
MluCI	AATT	8 cut(s)	933, 959, 1068, 1131, 1174, 1632, 1692, 1832
MluI	ACGCGT	1 cut(s)	103
MluNI	TGGCCA	1 cut(s)	1493
MlyI	GAGTC	7 cut(s)	122, 683, 911, 1708, 1984, 2113, 2249
MmeI	TCCRAC	6 cut(s)	43, 156, 1102, 1948, 2076, 2155
Mox20I	TGGCCA	1 cut(s)	1493
Mph1103I	ATGCAT	2 cut(s)	1288, 1504
MreI	CGCCGGCG	1 cut(s)	118
MroNI	GCCGGC	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	1493
MseI	TTAA	4 cut(s)	195, 962, 1197, 2296
MslI	CAYNNNNRTG	2 cut(s)	369, 1778
Msp20I	TGGCCA	1 cut(s)	1493
MspA1I	CMGCKG	4 cut(s)	824, 1210, 1643, 2156
MspI	CCGG	5 cut(s)	119, 1321, 2058, 2097, 2199
MspR9I	CCNGG	4 cut(s)	1355, 1848, 1935, 2098
MunI	CAATTG	2 cut(s)	1131, 1632
Mva1269I	GAATGC	1 cut(s)	1470
MvaI	CCWGG	3 cut(s)	1355, 1848, 1935
MvnI	CGCG	2 cut(s)	56, 105
MwoI	GCNNNNNNNGC	9 cut(s)	360, 497, 830, 1454, 1499, 1544, 1589, 1694, 2045
NaeI	GCCGGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	2098
NcoI	CCATGG	1 cut(s)	708
NdeI	CATATG	1 cut(s)	1504
NgoMIV	GCCGGC	1 cut(s)	118
NlaIV	GGNNCC	8 cut(s)	337, 818, 892, 1639, 1672, 1939, 2014, 2128
NmuCI	GTSAC	5 cut(s)	99, 845, 1261, 1517, 2165
NsiI	ATGCAT	2 cut(s)	1288, 1504
NspI	RCATGY	2 cut(s)	372, 2114
PagI	TCATGA	1 cut(s)	955
PciI	ACATGT	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 204
PctI	GAATGC	1 cut(s)	1470
PdiI	GCCGGC	1 cut(s)	120
PfeI	GAWTC	7 cut(s)	37, 43, 66, 471, 1313, 1563, 1971
PflFI	GACNNNGTC	1 cut(s)	2171
PinAI	ACCGGT	1 cut(s)	2057
PleI	GAGTC	7 cut(s)	122, 682, 910, 1708, 1984, 2113, 2248
PpsI	GAGTC	7 cut(s)	122, 682, 910, 1708, 1984, 2113, 2248
Ppu21I	YACGTR	2 cut(s)	97, 495
PscI	ACATGT	1 cut(s)	368
Psp1406I	AACGTT	1 cut(s)	207
Psp6I	CCWGG	3 cut(s)	1353, 1846, 1933
PspFI	CCCAGC	2 cut(s)	820, 1241
PspGI	CCWGG	3 cut(s)	1353, 1846, 1933
PspN4I	GGNNCC	8 cut(s)	337, 818, 892, 1639, 1672, 1939, 2014, 2128
PspPI	GGNCC	3 cut(s)	1508, 2126, 2201
PstI	CTGCAG	1 cut(s)	1597
PstNI	CAGNNNCTG	2 cut(s)	572, 1331
PsuI	RGATCY	7 cut(s)	22, 701, 875, 890, 1896, 2012, 2140
PsyI	GACNNNGTC	1 cut(s)	2171
PvuII	CAGCTG	3 cut(s)	824, 1210, 2156
RsaI	GTAC	7 cut(s)	95, 427, 644, 1110, 1824, 1864, 2031
RsaNI	GTAC	7 cut(s)	94, 426, 643, 1109, 1823, 1863, 2030
RseI	CAYNNNNRTG	2 cut(s)	369, 1778
SaqAI	TTAA	4 cut(s)	195, 962, 1197, 2296
Sau96I	GGNCC	3 cut(s)	1508, 2126, 2201
ScaI	AGTACT	1 cut(s)	1110
SchI	GAGTC	7 cut(s)	122, 683, 911, 1708, 1984, 2113, 2249
ScrFI	CCNGG	4 cut(s)	1355, 1848, 1935, 2098
SduI	GDGCHC	2 cut(s)	1475, 1942
SfaNI	GCATC	7 cut(s)	747, 1489, 1570, 1579, 1740, 1897, 2057
SfcI	CTRYAG	2 cut(s)	1449, 1593
SgrAI	CRCCGGYG	2 cut(s)	118, 2057
SinI	GGWCC	2 cut(s)	1508, 2126
SmiMI	CAYNNNNRTG	2 cut(s)	369, 1778
SmlI	CTYRAG	1 cut(s)	2186
SmoI	CTYRAG	1 cut(s)	2186
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	8 cut(s)	933, 959, 1068, 1131, 1174, 1632, 1692, 1832
SsiI	CCGC	8 cut(s)	32, 56, 144, 147, 1431, 1455, 1641, 2277
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	2 cut(s)	357, 2246
StyD4I	CCNGG	4 cut(s)	1353, 1846, 1933, 2096
StyI	CCWWGG	6 cut(s)	331, 475, 708, 812, 1459, 2130
TaaI	ACNGT	4 cut(s)	1108, 1120, 1702, 2173
TaiI	ACGT	3 cut(s)	99, 210, 497
TaqI	TCGA	2 cut(s)	1901, 2238
TasI	AATT	8 cut(s)	933, 959, 1068, 1131, 1174, 1632, 1692, 1832
TatI	WGTACW	3 cut(s)	642, 1108, 2029
TauI	GCSGC	3 cut(s)	149, 1433, 1457
TfiI	GAWTC	7 cut(s)	37, 43, 66, 471, 1313, 1563, 1971
Tru1I	TTAA	4 cut(s)	195, 962, 1197, 2296
Tru9I	TTAA	4 cut(s)	195, 962, 1197, 2296
TscAI	CASTG	3 cut(s)	92, 465, 1522
TseFI	GTSAC	5 cut(s)	99, 845, 1261, 1517, 2165
Tsp45I	GTSAC	5 cut(s)	99, 845, 1261, 1517, 2165
TspDTI	ATGAA	5 cut(s)	396, 497, 972, 1717, 1796
TspGWI	ACGGA	3 cut(s)	36, 287, 328
TspRI	CASTG	3 cut(s)	92, 465, 1522
Tth111I	GACNNNGTC	1 cut(s)	2171
VpaK11BI	GGWCC	2 cut(s)	1508, 2126
XagI	CCTNNNNNAGG	2 cut(s)	176, 1856
XceI	RCATGY	2 cut(s)	372, 2114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XspI	CTAG	2 cut(s)	357, 2246
ZrmI	AGTACT	1 cut(s)	1110
Zsp2I	ATGCAT	2 cut(s)	1288, 1504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.