Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003887

Physical Location & Seq

Genomic Coordinates Forward (+)

19735363 .. 19739434

Gene Structure 4072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G220200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGAAGACGACGACACGAAGCAGCTGAGCATATACAGGGCGGCGAGGACGATAAAGCGGAGGGAAAACACCCTCTACAACGCCCTTAAATCCATCTACGACGACTCCATCTTTGTCGGCGAAATCTTGCAGGTTTGGCCCGACCTCCCTCTCCTCGCAAACCTACGATGCGGCCTCTGGTACTCTTCCAAGTTCCACTCTACTTGCTACTTCAAATCCACTGACGGCCACAACAATAACTGGTCCTTCAACACCTCTCGCCTCAACCTCCATGTCGCTCAACTTGCAGGACAGAAAGGAGGGTGCTTTATTGTGGATGCAACTCGGAGAGGGAAGAGGTTTCCAGATAGCATGTCGAAGACGATACCCATTTGGACCTGCGTTTTGAACCGATCTATTTCTAACCATTTGAATAAAATGCGTCAATCTGCTCAGTTCAATGATGGGGAGGTAAGTACTTCTGATGAACAACATTGTGAAGATACAAGACAGACCAGTGTTGATTGGGATTGTTCCTTGCATCTTCCTCTTTGGGTTTCTGAAACAGAGAAAGCTTCGATTGAGGATCGCTTAGACGAATGGACCCGACAGTTGGAAGCCAGTGGAGCTGACATTGCCTCTCTTGCTTCTTTATTGAAAAAGCCGCTACGCCCTCTATGGATATCACAAAAGACTGTCATTTGGTTGAACGAAGTTCCGGACCACGATTCATGGGATTTCACACCAATCATTCTTGTTTCTGCCTCTGCCTCTAATGATGTTGTACAACAACACAGTACAAGTTCAGAATTTAGCTGGAATTACATAGCGGGAGCAGGTGATGATGAAGAAAGCTGGGCTAGGGGTTTAACACCTACCCTCTTCTGGAACCATGCCTATGAAATTATAAATGCAGGACCCGTGTTGTGTAATCAGATGGTAGCTGATATAGTCGAAAAGGATCGAGTGTATCGCGCTCGAAGGGGACAAATTGCCCCTCAGGTCACTGTCAAGGCCTCCAAGTTGGTAGAAAACTCAGTTCATTGTTTGCAGGATGACTCAGTGTTGCCTTTAGATATTTCAACTATAAATATTGATCTAAATTCTTGTGATGAAGATTGCACTATATGTTGGCTGGGTTCAACAAGTCTTGCTGTAGGCAAATCTCAAACTGCTGCAGCATCTAAAGTTGATTGTATATTAAATTGTGATCAAGAGCCCATGTCTGCCTCTCTTCGGCATGATAAAGTATATCTACATCTTCCTATGGTGACATCAAAGTTTGATCGCTTTTCCTTATTGAATAAACTCCCATCTGCGGTGAACTTTGCAAAGTTAAATCTAAGCAAAGGGAAGACCCTTCTAATTTGTTGCAATAATGGGGAAGATATCAGTGTATGTGTCTGTCTGGCAATCTTGACATCTTTATTTGATGATGGAGGAACCTTCGATGGTGGAAGTTTCTTTAGTGAGACATGCATTACTAAATTGGAAATGCGGAGGAGACTCGTAACCATCTGTAAATATGTAGTAAATGCAAGGCCATCAAGAGGGAATCTGAAGCAGGTTTTCGGTTTTCTTAGTGGTGGAAGAGCTGTTTCGGAGAAGAGGCTTCACTCGCAAGATCAGTTGCTCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0019988 GO:0034470 GO:0034641 GO:0034660 GO:0036211 GO:0043170 GO:0043399 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Init_tRNA_PT Rit1_C

Protein Analysis

540

Amino Acids

60.44

Weight (kDa)

5.94

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40570 AT2G40570 AT2G40570
fragaria_vesca	FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070 FvH4_1g06070
malus_domestica	MD02G1065300.v1.1 MD15G1196200.v1.1
prunus_persica	Prupe.7G220200_v2.0.a1 Prupe.7G220200_v2.0.a1 Prupe.7G220200_v2.0.a1
pyrus_communis	pycom02g05140
rosa_chinensis	RchiOBHm_Chr2g0091831
rosa_laevigata	RLG00000016255
rosa_multiflora	Rmu_sc0021402.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149700
rosa_rugosa	Rorug02G0021400
rosa_samantha	Rh2AG066000 Rh2BG065500 Rh2CG066900 Rh2DG065100
rosa_wichuraiana	Rw2G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
AarI	CACCTGC	1 cut(s)	806
Acc36I	ACCTGC	4 cut(s)	121, 386, 806, 1534
AccII	CGCG	1 cut(s)	954
AccIII	TCCGGA	1 cut(s)	697
AciI	CCGC	7 cut(s)	41, 58, 171, 644, 809, 1298, 1477
AclWI	GGATC	2 cut(s)	573, 948
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	788, 1081
AcuI	CTGAAG	1 cut(s)	1559
AfaI	GTAC	4 cut(s)	182, 457, 765, 778
AfiI	CCNNNNNNNGG	5 cut(s)	592, 864, 1215, 1297, 1529
AluBI	AGCT	7 cut(s)	25, 554, 608, 795, 834, 923, 1574
AluI	AGCT	7 cut(s)	25, 554, 608, 795, 834, 923, 1574
Alw26I	GTCTC	2 cut(s)	1445, 1477
AlwI	GGATC	2 cut(s)	573, 948
Aor13HI	TCCGGA	1 cut(s)	697
AoxI	GGCC	5 cut(s)	137, 172, 226, 993, 1520
ApeKI	GCWGC	3 cut(s)	22, 1154, 1157
ApoI	RAATTY	2 cut(s)	788, 1081
ArsI	GACNNNNNNTTYG	4 cut(s)	95, 127, 367, 399
AspLEI	GCGC	1 cut(s)	956
AspS9I	GGNCC	6 cut(s)	138, 243, 375, 582, 700, 896
AsuHPI	GGTGA	3 cut(s)	830, 1261, 1312
AvaII	GGWCC	5 cut(s)	243, 375, 582, 700, 896
AxyI	CCTNAGG	1 cut(s)	978
BanII	GRGCYC	1 cut(s)	1200
BbsI	GAAGAC	3 cut(s)	12, 365, 1340
BbvI	GCAGC	3 cut(s)	34, 1141, 1169
BccI	CCATC	9 cut(s)	101, 116, 437, 910, 1300, 1409, 1424, 1502, 1531
BceAI	ACGGC	1 cut(s)	241
BclI	TGATCA	1 cut(s)	1189
BcoDI	GTCTC	2 cut(s)	1445, 1477
BfaI	CTAG	1 cut(s)	840
BfmI	CTRYAG	2 cut(s)	1134, 1155
BfuAI	ACCTGC	4 cut(s)	121, 386, 806, 1534
BisI	GCNGC	6 cut(s)	23, 42, 172, 644, 1155, 1158
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	6 cut(s)	24, 43, 173, 645, 1156, 1159
BmcAI	AGTACT	1 cut(s)	457
Bme18I	GGWCC	5 cut(s)	243, 375, 582, 700, 896
BmgT120I	GGNCC	6 cut(s)	138, 243, 375, 582, 700, 896
BmiI	GGNNCC	4 cut(s)	584, 869, 898, 1423
BmsI	GCATC	4 cut(s)	158, 307, 529, 1169
BpiI	GAAGAC	3 cut(s)	12, 365, 1340
Bpu1102I	GCTNAGC	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	697
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	5 cut(s)	592, 864, 1215, 1297, 1529
Bse1I	ACTGG	3 cut(s)	245, 495, 600
Bse21I	CCTNAGG	1 cut(s)	978
Bse3DI	GCAATG	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	697
BseGI	GGATG	2 cut(s)	322, 1039
BseLI	CCNNNNNNNGG	5 cut(s)	592, 864, 1215, 1297, 1529
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	5 cut(s)	17, 446, 992, 1029, 1053
BseNI	ACTGG	3 cut(s)	245, 495, 600
BseRI	GAGGAG	2 cut(s)	143, 1495
BseXI	GCAGC	3 cut(s)	34, 1141, 1169
BseYI	CCCAGC	2 cut(s)	834, 1114
Bsh1236I	CGCG	1 cut(s)	954
BshFI	GGCC	5 cut(s)	139, 174, 228, 995, 1522
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	978
BslI	CCNNNNNNNGG	5 cut(s)	592, 864, 1215, 1297, 1529
BsmAI	GTCTC	2 cut(s)	1445, 1477
BsmFI	GGGAC	1 cut(s)	978
BsnI	GGCC	5 cut(s)	139, 174, 228, 995, 1522
Bsp1286I	GDGCHC	1 cut(s)	1200
Bsp13I	TCCGGA	1 cut(s)	697
Bsp1407I	TGTACA	1 cut(s)	763
Bsp143I	GATC	7 cut(s)	392, 565, 940, 1075, 1189, 1264, 1603
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	7 cut(s)	41, 58, 171, 644, 809, 1298, 1477
BspANI	GGCC	5 cut(s)	139, 174, 228, 995, 1522
BspCNI	CTCAG	5 cut(s)	18, 445, 991, 1028, 1052
BspEI	TCCGGA	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	954
BspLI	GGNNCC	4 cut(s)	584, 869, 898, 1423
BspMAI	CTGCAG	1 cut(s)	1159
BspMI	ACCTGC	4 cut(s)	121, 386, 806, 1534
BspPI	GGATC	2 cut(s)	573, 948
BspQI	GCTCTTC	1 cut(s)	1564
BsrDI	GCAATG	1 cut(s)	612
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	3 cut(s)	245, 495, 600
BssMI	GATC	7 cut(s)	392, 565, 940, 1075, 1189, 1264, 1603
Bst4CI	ACNGT	4 cut(s)	591, 676, 776, 988
Bst6I	CTCTTC	6 cut(s)	190, 329, 866, 1218, 1564, 1580
BstAUI	TGTACA	1 cut(s)	763
BstDEI	CTNAG	8 cut(s)	26, 432, 571, 978, 1015, 1039, 1322, 1559
BstF5I	GGATG	2 cut(s)	322, 1039
BstFNI	CGCG	1 cut(s)	954
BstHHI	GCGC	1 cut(s)	956
BstKTI	GATC	7 cut(s)	395, 568, 943, 1078, 1192, 1267, 1606
BstMAI	GTCTC	2 cut(s)	1445, 1477
BstMBI	GATC	7 cut(s)	392, 565, 940, 1075, 1189, 1264, 1603
BstMWI	GCNNNNNNNGC	6 cut(s)	136, 284, 605, 614, 623, 1597
BstNSI	RCATGY	2 cut(s)	355, 1458
BstSFI	CTRYAG	2 cut(s)	1134, 1155
BstUI	CGCG	1 cut(s)	954
BstV1I	GCAGC	3 cut(s)	34, 1141, 1169
BstV2I	GAAGAC	3 cut(s)	12, 365, 1340
Bsu36I	CCTNAGG	1 cut(s)	978
BsuRI	GGCC	5 cut(s)	139, 174, 228, 995, 1522
BtsCI	GGATG	2 cut(s)	322, 1039
BtsIMutI	CAGTG	6 cut(s)	219, 502, 607, 984, 1047, 1378
BveI	ACCTGC	4 cut(s)	121, 386, 806, 1534
CfoI	GCGC	1 cut(s)	956
Cfr13I	GGNCC	6 cut(s)	138, 243, 375, 582, 700, 896
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	4 cut(s)	181, 456, 764, 777
CspCI	CAANNNNNGTGG	2 cut(s)	185, 220
CviAII	CATG	7 cut(s)	272, 352, 711, 872, 1201, 1220, 1455
CviQI	GTAC	4 cut(s)	181, 456, 764, 777
DdeI	CTNAG	8 cut(s)	26, 432, 571, 978, 1015, 1039, 1322, 1559
DpnI	GATC	7 cut(s)	394, 567, 942, 1077, 1191, 1266, 1605
DpnII	GATC	7 cut(s)	392, 565, 940, 1075, 1189, 1264, 1603
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	6 cut(s)	190, 329, 866, 1218, 1564, 1580
EarI	CTCTTC	6 cut(s)	190, 329, 866, 1218, 1564, 1580
Eco147I	AGGCCT	1 cut(s)	995
Eco24I	GRGCYC	1 cut(s)	1200
Eco32I	GATATC	2 cut(s)	663, 1369
Eco47I	GGWCC	5 cut(s)	243, 375, 582, 700, 896
Eco57I	CTGAAG	1 cut(s)	1559
Eco81I	CCTNAGG	1 cut(s)	978
EcoO109I	RGGNCCY	1 cut(s)	896
EcoRV	GATATC	2 cut(s)	663, 1369
EcoT22I	ATGCAT	1 cut(s)	1460
EcoT38I	GRGCYC	1 cut(s)	1200
FaeI	CATG	7 cut(s)	275, 355, 714, 875, 1204, 1223, 1458
FaqI	GGGAC	1 cut(s)	978
FatI	CATG	7 cut(s)	271, 351, 710, 871, 1200, 1219, 1454
FauI	CCCGC	1 cut(s)	802
FbaI	TGATCA	1 cut(s)	1189
Fnu4HI	GCNGC	6 cut(s)	23, 42, 172, 644, 1155, 1158
FokI	GGATG	2 cut(s)	329, 1046
FriOI	GRGCYC	1 cut(s)	1200
Fsp4HI	GCNGC	6 cut(s)	23, 42, 172, 644, 1155, 1158
FspBI	CTAG	1 cut(s)	840
GlaI	GCGC	1 cut(s)	955
GluI	GCNGC	6 cut(s)	23, 42, 172, 644, 1155, 1158
GsaI	CCCAGC	2 cut(s)	838, 1118
HaeIII	GGCC	5 cut(s)	139, 174, 228, 995, 1522
HapII	CCGG	1 cut(s)	698
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	956
Hin1II	CATG	7 cut(s)	275, 355, 714, 875, 1204, 1223, 1458
Hin6I	GCGC	1 cut(s)	954
HinP1I	GCGC	1 cut(s)	954
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	5 cut(s)	104, 707, 1037, 1485, 1534
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	3 cut(s)	830, 1261, 1312
Hpy166II	GTNNAC	1 cut(s)	1303
Hpy188I	TCNGA	7 cut(s)	327, 463, 541, 787, 915, 1539, 1582
Hpy188III	TCNNGA	6 cut(s)	344, 698, 865, 1193, 1396, 1527
Hpy8I	GTNNAC	1 cut(s)	1303
Hpy99I	CGWCG	2 cut(s)	14, 104
HpyAV	CCTTC	4 cut(s)	256, 954, 1349, 1435
HpyCH4III	ACNGT	4 cut(s)	591, 676, 776, 988
HpyF10VI	GCNNNNNNNGC	6 cut(s)	136, 284, 605, 614, 623, 1597
HpyF3I	CTNAG	8 cut(s)	26, 432, 571, 978, 1015, 1039, 1322, 1559
Hsp92II	CATG	7 cut(s)	275, 355, 714, 875, 1204, 1223, 1458
HspAI	GCGC	1 cut(s)	954
Kpn2I	TCCGGA	1 cut(s)	697
Ksp22I	TGATCA	1 cut(s)	1189
Kzo9I	GATC	7 cut(s)	392, 565, 940, 1075, 1189, 1264, 1603
LguI	GCTCTTC	1 cut(s)	1564
LmnI	GCTCC	2 cut(s)	605, 812
Lsp1109I	GCAGC	3 cut(s)	34, 1141, 1169
LweI	GCATC	4 cut(s)	158, 307, 529, 1169
MaeI	CTAG	1 cut(s)	840
MaeIII	GTNAC	3 cut(s)	982, 1249, 1489
MalI	GATC	7 cut(s)	394, 567, 942, 1077, 1191, 1266, 1605
MboI	GATC	7 cut(s)	392, 565, 940, 1075, 1189, 1264, 1603
MhlI	GDGCHC	1 cut(s)	1200
MluCI	AATT	8 cut(s)	788, 799, 882, 969, 1081, 1183, 1344, 1466
MlyI	GAGTC	3 cut(s)	98, 1031, 1479
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	1 cut(s)	1460
MroI	TCCGGA	1 cut(s)	697
MseI	TTAA	4 cut(s)	87, 848, 1181, 1316
MslI	CAYNNNNRTG	1 cut(s)	876
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	1 cut(s)	698
MvnI	CGCG	1 cut(s)	954
MwoI	GCNNNNNNNGC	6 cut(s)	136, 284, 605, 614, 623, 1597
NdeII	GATC	7 cut(s)	392, 565, 940, 1075, 1189, 1264, 1603
NlaIII	CATG	7 cut(s)	275, 355, 714, 875, 1204, 1223, 1458
NlaIV	GGNNCC	4 cut(s)	584, 869, 898, 1423
NmuCI	GTSAC	2 cut(s)	982, 1249
NsiI	ATGCAT	1 cut(s)	1460
NspI	RCATGY	2 cut(s)	355, 1458
PaqCI	CACCTGC	1 cut(s)	806
PceI	AGGCCT	1 cut(s)	995
PciSI	GCTCTTC	1 cut(s)	1564
PfeI	GAWTC	2 cut(s)	707, 1534
PkrI	GCNGC	6 cut(s)	24, 43, 173, 645, 1156, 1159
PleI	GAGTC	3 cut(s)	98, 1031, 1479
PpsI	GAGTC	3 cut(s)	98, 1031, 1479
PpuMI	RGGWCCY	1 cut(s)	896
PsiI	TTATAA	1 cut(s)	887
Psp5II	RGGWCCY	1 cut(s)	896
PspFI	CCCAGC	2 cut(s)	834, 1114
PspN4I	GGNNCC	4 cut(s)	584, 869, 898, 1423
PspPI	GGNCC	6 cut(s)	138, 243, 375, 582, 700, 896
PspPPI	RGGWCCY	1 cut(s)	896
PstI	CTGCAG	1 cut(s)	1159
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	4 cut(s)	182, 457, 765, 778
RsaNI	GTAC	4 cut(s)	181, 456, 764, 777
RseI	CAYNNNNRTG	1 cut(s)	876
SapI	GCTCTTC	1 cut(s)	1564
SaqAI	TTAA	4 cut(s)	87, 848, 1181, 1316
SatI	GCNGC	6 cut(s)	23, 42, 172, 644, 1155, 1158
Sau3AI	GATC	7 cut(s)	392, 565, 940, 1075, 1189, 1264, 1603
Sau96I	GGNCC	6 cut(s)	138, 243, 375, 582, 700, 896
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	3 cut(s)	98, 1031, 1479
SduI	GDGCHC	1 cut(s)	1200
SfaNI	GCATC	4 cut(s)	158, 307, 529, 1169
SfcI	CTRYAG	2 cut(s)	1134, 1155
SinI	GGWCC	5 cut(s)	243, 375, 582, 700, 896
SmiMI	CAYNNNNRTG	1 cut(s)	876
Sse9I	AATT	8 cut(s)	788, 799, 882, 969, 1081, 1183, 1344, 1466
SseBI	AGGCCT	1 cut(s)	995
SsiI	CCGC	7 cut(s)	41, 58, 171, 644, 809, 1298, 1477
SspI	AATATT	1 cut(s)	1072
SspMI	CTAG	1 cut(s)	840
StuI	AGGCCT	1 cut(s)	995
TaaI	ACNGT	4 cut(s)	591, 676, 776, 988
TaqI	TCGA	7 cut(s)	356, 557, 933, 943, 958, 1428, 1614
TasI	AATT	8 cut(s)	788, 799, 882, 969, 1081, 1183, 1344, 1466
TatI	WGTACW	3 cut(s)	455, 763, 776
TauI	GCSGC	3 cut(s)	44, 174, 646
TfiI	GAWTC	2 cut(s)	707, 1534
Tru1I	TTAA	4 cut(s)	87, 848, 1181, 1316
Tru9I	TTAA	4 cut(s)	87, 848, 1181, 1316
TscAI	CASTG	6 cut(s)	226, 502, 607, 991, 1047, 1378
TseFI	GTSAC	2 cut(s)	982, 1249
TseI	GCWGC	3 cut(s)	22, 1154, 1157
Tsp45I	GTSAC	2 cut(s)	982, 1249
TspDTI	ATGAA	6 cut(s)	480, 699, 840, 894, 1010, 1107
TspRI	CASTG	6 cut(s)	226, 502, 607, 991, 1047, 1378
VpaK11BI	GGWCC	5 cut(s)	243, 375, 582, 700, 896
XapI	RAATTY	2 cut(s)	788, 1081
XceI	RCATGY	2 cut(s)	355, 1458
XspI	CTAG	1 cut(s)	840
ZrmI	AGTACT	1 cut(s)	457
Zsp2I	ATGCAT	1 cut(s)	1460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.