AT2G41120

Domain of unknown function (DUF309)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013514
Physical Location & Seq
Reverse (-)
17141275 .. 17142485
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41120.1

Sequence Viewer

Length: 786 bp
ATGGCAGTTTCTTCGAAACATTTCCAGGTTCCTTCATCTTTCACGCTTCCTCCATCTTCTTTCTTCAGCTCCTTAATCCCTTCTTCTCCAATCTCTGTTACTGCTTCAACGATTCGAGCCTCCACAAAATTTAGCTCCATACGCGTCCGTTTCAGTCGAAGATCAATCGTCAGATACAACGACCACGCCGGAGAAGACGAAGAGGATAGTGACGAGGATAAGGAAGAATATTGGAGCTTTGAGGAAGCAGTGACTCTCTTCAACAAGAGGGATTATTACAAAAGTCATGACGCGCTTGAAGCTCTTTGGATTCAAGCAGAGGAACCAACTCGTACCTTAATCCATGGAATTCTTCAATGTGCTGTTGGATTTCACCATCTATTCAACAACAACCATAAAGGAGCGATGATGGAGTTAGGAGAAGGAGTATGTAAGCTAAGGAAGATGAATTTCGAAGACGGACCGTTTCATGAATTCGAGCGAGATGTCTCCGCAGTTCTTGAATTCGTTTATCAAACTCAGCTTGAACTTGCTGCCTGTTCAGAAGATATGTGTTTGACGATGGATCAATCAGACAGATCGTATCAACTCTTAGGTGGTTATGCAGCTGGAGAGAGTATTTACAGCTTAGAGACTGTGCTTGACTTCAACAATGGAATGTCTGAGACAACTTCTATACTCTTCTCTCCTTTACATTCATCGTCTGAGCCAACTCGGGTTAAGCTCCCTACCCTTACCGCAACCGATAAGCATCTTCTTGCTTCTACATACGACGACAGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF309

Protein Analysis

261

Amino Acids

29.53

Weight (kDa)

4.98

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF309 PF03745 80 - 136 1.3e-21 Domain of unknown function (DUF309)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41120
fragaria_vesca FvH4_1g29750
malus_domestica MD12G1013500.v1.1
prunus_persica Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1
pyrus_communis pycom12g01080
rosa_chinensis RchiOBHm_Chr3g0495771
rosa_laevigata RLG00000022587
rosa_multiflora Rmu_co8355459.1_g000001
rosa_roxburghii Rroxscaffold_6G00390020
rosa_rugosa Rorug03G0276400
rosa_samantha Rh3AG323700 Rh3BG359300 Rh3CG355900 Rh3DG359100
rosa_wichuraiana Rw3G028300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 144, 293
AciI CCGC 2 cut(s) 492, 738
AclWI GGATC 1 cut(s) 573
AcsI RAATTY 5 cut(s) 128, 348, 448, 473, 503
AcuI CTGAAG 1 cut(s) 49
AfaI GTAC 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 9 cut(s) 108, 262, 299, 314, 356, 385, 503, 527, 649
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 9 cut(s) 69, 135, 237, 302, 436, 523, 608, 627, 724
AluI AGCT 9 cut(s) 69, 135, 237, 302, 436, 523, 608, 627, 724
Alw26I GTCTC 3 cut(s) 493, 626, 659
AlwI GGATC 1 cut(s) 573
Ama87I CYCGRG 1 cut(s) 714
ApeKI GCWGC 2 cut(s) 533, 605
ApoI RAATTY 5 cut(s) 128, 348, 448, 473, 503
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 365
AsuII TTCGAA 2 cut(s) 14, 453
AvaI CYCGRG 1 cut(s) 714
AvaII GGWCC 1 cut(s) 461
BbsI GAAGAC 2 cut(s) 201, 462
BbvI GCAGC 2 cut(s) 520, 617
BccI CCATC 4 cut(s) 61, 384, 403, 556
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 3 cut(s) 493, 626, 659
BisI GCNGC 2 cut(s) 534, 606
BlsI GCNGC 2 cut(s) 535, 607
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 714
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 2 cut(s) 30, 324
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 760
BpiI GAAGAC 2 cut(s) 201, 462
BpmI CTGGAG 1 cut(s) 630
Bpu10I CCTNAGC 1 cut(s) 437
Bpu14I TTCGAA 2 cut(s) 14, 453
BsaBI GATNNNNATC 1 cut(s) 750
BsaJI CCNNGG 1 cut(s) 343
BsaXI ACNNNNNCTCC 4 cut(s) 34, 64, 411, 441
Bse8I GATNNNNATC 1 cut(s) 750
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 343
BseJI GATNNNNATC 1 cut(s) 750
BseMII CTCAG 3 cut(s) 533, 654, 696
BseXI GCAGC 2 cut(s) 520, 617
Bsh1236I CGCG 2 cut(s) 144, 293
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 1 cut(s) 189
BsmAI GTCTC 3 cut(s) 493, 626, 659
BsoBI CYCGRG 1 cut(s) 714
Bsp119I TTCGAA 2 cut(s) 14, 453
Bsp143I GATC 3 cut(s) 161, 565, 578
Bsp19I CCATGG 1 cut(s) 343
BspACI CCGC 2 cut(s) 492, 738
BspCNI CTCAG 3 cut(s) 532, 655, 697
BspFNI CGCG 2 cut(s) 144, 293
BspHI TCATGA 2 cut(s) 286, 469
BspLI GGNNCC 2 cut(s) 30, 324
BspPI GGATC 1 cut(s) 573
BspT104I TTCGAA 2 cut(s) 14, 453
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 3 cut(s) 161, 565, 578
BssT1I CCWWGG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 2 cut(s) 465, 637
Bst6I CTCTTC 3 cut(s) 195, 263, 686
BstBI TTCGAA 2 cut(s) 14, 453
BstDEI CTNAG 6 cut(s) 437, 519, 592, 628, 663, 705
BstDSI CCRYGG 1 cut(s) 343
BstFNI CGCG 2 cut(s) 144, 293
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 3 cut(s) 164, 568, 581
BstMAI GTCTC 3 cut(s) 493, 626, 659
BstMBI GATC 3 cut(s) 161, 565, 578
BstMWI GCNNNNNNNGC 2 cut(s) 141, 299
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstUI CGCG 2 cut(s) 144, 293
BstV1I GCAGC 2 cut(s) 520, 617
BstV2I GAAGAC 2 cut(s) 201, 462
BtgI CCRYGG 1 cut(s) 343
BtgZI GCGATG 1 cut(s) 419
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
CciI TCATGA 2 cut(s) 286, 469
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 461
CpoI CGGWCCG 1 cut(s) 461
CseI GACGC 2 cut(s) 133, 299
Csp6I GTAC 1 cut(s) 333
CspI CGGWCCG 1 cut(s) 461
CviAII CATG 3 cut(s) 287, 344, 470
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 6 cut(s) 437, 519, 592, 628, 663, 705
DpnI GATC 3 cut(s) 163, 567, 580
DpnII GATC 3 cut(s) 161, 565, 578
Eam1104I CTCTTC 3 cut(s) 195, 263, 686
EarI CTCTTC 3 cut(s) 195, 263, 686
Eco130I CCWWGG 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 714
EcoRI GAATTC 3 cut(s) 348, 473, 503
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 3 cut(s) 290, 347, 473
FatI CATG 3 cut(s) 286, 343, 469
Fnu4HI GCNGC 2 cut(s) 534, 606
Fsp4HI GCNGC 2 cut(s) 534, 606
GlaI GCGC 1 cut(s) 294
GluI GCNGC 2 cut(s) 534, 606
GsuI CTGGAG 1 cut(s) 630
HapII CCGG 1 cut(s) 189
HgaI GACGC 2 cut(s) 133, 299
HhaI GCGC 1 cut(s) 295
Hin1II CATG 3 cut(s) 290, 347, 473
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 4 cut(s) 112, 253, 310, 780
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 5 cut(s) 173, 544, 574, 664, 706
Hpy188III TCNNGA 3 cut(s) 287, 470, 500
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 3 cut(s) 42, 90, 416
HpyCH4III ACNGT 2 cut(s) 465, 637
HpyCH4V TGCA 1 cut(s) 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 299
HpyF3I CTNAG 6 cut(s) 437, 519, 592, 628, 663, 705
Hsp92II CATG 3 cut(s) 290, 347, 473
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 3 cut(s) 161, 565, 578
LmnI GCTCC 5 cut(s) 74, 140, 234, 401, 729
LpnPI CCDG 5 cut(s) 11, 38, 202, 550, 594
Lsp1109I GCAGC 2 cut(s) 520, 617
LweI GCATC 1 cut(s) 760
MaeIII GTNAC 3 cut(s) 97, 209, 250
MalI GATC 3 cut(s) 163, 567, 580
MboI GATC 3 cut(s) 161, 565, 578
MluCI AATT 5 cut(s) 128, 348, 448, 473, 503
MluI ACGCGT 1 cut(s) 142
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 7 cut(s) 60, 130, 196, 208, 235, 261, 313
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 3 cut(s) 74, 338, 720
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MvnI CGCG 2 cut(s) 144, 293
MwoI GCNNNNNNNGC 2 cut(s) 141, 299
NcoI CCATGG 1 cut(s) 343
NdeII GATC 3 cut(s) 161, 565, 578
NlaIII CATG 3 cut(s) 290, 347, 473
NlaIV GGNNCC 2 cut(s) 30, 324
NmuCI GTSAC 2 cut(s) 209, 250
NspV TTCGAA 2 cut(s) 14, 453
PagI TCATGA 2 cut(s) 286, 469
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 3 cut(s) 112, 310, 780
PkrI GCNGC 2 cut(s) 535, 607
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 30, 324
PspPI GGNCC 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
Rsr2I CGGWCCG 1 cut(s) 461
RsrII CGGWCCG 1 cut(s) 461
SaqAI TTAA 3 cut(s) 74, 338, 720
SatI GCNGC 2 cut(s) 534, 606
Sau3AI GATC 3 cut(s) 161, 565, 578
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 26
SfaNI GCATC 1 cut(s) 760
SfuI TTCGAA 2 cut(s) 14, 453
SinI GGWCC 1 cut(s) 461
Sse9I AATT 5 cut(s) 128, 348, 448, 473, 503
SsiI CCGC 2 cut(s) 492, 738
SspI AATATT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 465, 637
TaqI TCGA 5 cut(s) 14, 115, 157, 453, 477
TasI AATT 5 cut(s) 128, 348, 448, 473, 503
TfiI GAWTC 3 cut(s) 112, 310, 780
Tru1I TTAA 3 cut(s) 74, 338, 720
Tru9I TTAA 3 cut(s) 74, 338, 720
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 2 cut(s) 209, 250
TseI GCWGC 2 cut(s) 533, 605
Tsp45I GTSAC 2 cut(s) 209, 250
TspDTI ATGAA 5 cut(s) 24, 458, 461, 486, 687
TspGWI ACGGA 2 cut(s) 137, 474
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 5 cut(s) 128, 348, 448, 473, 503
XmnI GAANNNNTTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.