Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8355459.1

Orthogroup ID

OG0013514

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 738

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8355459.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 544 bp

atggcgtttccagcttctgctatctgcagtttaactagtcctgttttttctcgctcatcgacctcaaactctctcctcccttctcaaaccaacccaatcaccgtctgctcttctgaatattattcaaagcctttcagcagctacacaagtcaacacagctgcaggcactactcgtcttgttttcgtatttcatatcgattctcagatgctggagaaggtgaagacgaagctgaggattgcagctttgatgaagcagcggtccttttcaacacaagagaatactacaagtgccatgactttcttgagtcactttggaacaaagctgaagaacccaccagaactctttttcatggtattctacaatgcgccgtgggattccatcacctattcaaccagaaccataaaggagctatgatggagctgggagaggggctgtgtaagcttagaaagatgaatttcaaaactgggccattttacgagtttgagcaacaaatctctgcagctctcgatttcatttaccaaacacaaatagagttagccgcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF309

Protein Analysis

181

Amino Acids

20.55

Weight (kDa)

5.45

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41120
fragaria_vesca	FvH4_1g29750
malus_domestica	MD12G1013500.v1.1
prunus_persica	Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1
pyrus_communis	pycom12g01080
rosa_chinensis	RchiOBHm_Chr3g0495771
rosa_laevigata	RLG00000022587
rosa_multiflora	Rmu_co8355459.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390020
rosa_rugosa	Rorug03G0276400
rosa_samantha	Rh3AG323700 Rh3BG359300 Rh3CG355900 Rh3DG359100
rosa_wichuraiana	Rw3G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	257, 540
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	345
AgsI	TTSAA	4 cut(s)	126, 268, 391, 460
AhlI	ACTAGT	1 cut(s)	35
AlwNI	CAGNNNCTG	2 cut(s)	17, 209
AoxI	GGCC	1 cut(s)	467
ApeKI	GCWGC	5 cut(s)	138, 159, 240, 254, 500
ApoI	RAATTY	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	259, 467
AsuHPI	GGTGA	3 cut(s)	91, 230, 374
AvaII	GGWCC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	5 cut(s)	146, 150, 252, 266, 512
BccI	CCATC	2 cut(s)	387, 409
BceAI	ACGGC	1 cut(s)	353
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	3 cut(s)	25, 160, 498
BisI	GCNGC	6 cut(s)	139, 160, 241, 255, 501, 540
BlsI	GCNGC	6 cut(s)	140, 161, 242, 256, 502, 541
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	259, 467
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	469
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	216, 222
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	5 cut(s)	146, 150, 252, 266, 512
BseYI	CCCAGC	1 cut(s)	421
BshFI	GGCC	1 cut(s)	469
BshVI	ATCGAT	1 cut(s)	196
BsnI	GGCC	1 cut(s)	469
BspACI	CCGC	2 cut(s)	257, 540
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	2 cut(s)	215, 223
BspDI	ATCGAT	1 cut(s)	196
BspMAI	CTGCAG	3 cut(s)	29, 164, 502
BspQI	GCTCTTC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	3 cut(s)	202, 231, 443
BstDSI	CCRYGG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	368
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 439
BstSFI	CTRYAG	3 cut(s)	25, 160, 498
BstV1I	GCAGC	5 cut(s)	146, 150, 252, 266, 512
BstV2I	GAAGAC	1 cut(s)	228
Bsu15I	ATCGAT	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	469
BsuTUI	ATCGAT	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	164
CaiI	CAGNNNCTG	2 cut(s)	17, 209
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	259, 467
ClaI	ATCGAT	1 cut(s)	196
CviAII	CATG	2 cut(s)	293, 350
DdeI	CTNAG	3 cut(s)	202, 231, 443
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	345
FaeI	CATG	2 cut(s)	296, 353
FaiI	YATR	5 cut(s)	193, 294, 351, 402, 413
FatI	CATG	2 cut(s)	292, 349
Fnu4HI	GCNGC	6 cut(s)	139, 160, 241, 255, 501, 540
Fsp4HI	GCNGC	6 cut(s)	139, 160, 241, 255, 501, 540
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	6 cut(s)	139, 160, 241, 255, 501, 540
GsaI	CCCAGC	1 cut(s)	425
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	469
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	2 cut(s)	296, 353
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	3 cut(s)	198, 305, 375
HphI	GGTGA	3 cut(s)	91, 230, 374
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	115, 205
Hpy188III	TCNNGA	2 cut(s)	302, 506
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	90, 209
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	27, 162, 240, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 439
HpyF3I	CTNAG	3 cut(s)	202, 231, 443
Hsp92II	CATG	2 cut(s)	296, 353
HspAI	GCGC	1 cut(s)	366
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	407, 418
LpnPI	CCDG	8 cut(s)	24, 54, 148, 195, 349, 407, 407, 450
Lsp1109I	GCAGC	5 cut(s)	146, 150, 252, 266, 512
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	306
MboII	GAAGA	3 cut(s)	102, 233, 338
MluCI	AATT	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	4 cut(s)	73, 86, 226, 421
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	2 cut(s)	159, 257
MwoI	GCNNNNNNNGC	2 cut(s)	11, 439
NlaIII	CATG	2 cut(s)	296, 353
NmuCI	GTSAC	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	198, 375
PkrI	GCNGC	6 cut(s)	140, 161, 242, 256, 502, 541
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	421
PspPI	GGNCC	2 cut(s)	259, 467
PstI	CTGCAG	3 cut(s)	29, 164, 502
PstNI	CAGNNNCTG	2 cut(s)	17, 209
PvuII	CAGCTG	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	6 cut(s)	139, 160, 241, 255, 501, 540
Sau96I	GGNCC	2 cut(s)	259, 467
SchI	GAGTC	1 cut(s)	314
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	3 cut(s)	25, 160, 498
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	1 cut(s)	454
SsiI	CCGC	2 cut(s)	257, 540
SspI	AATATT	1 cut(s)	119
SspMI	CTAG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	3 cut(s)	59, 196, 507
TasI	AATT	1 cut(s)	454
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	2 cut(s)	198, 375
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	5 cut(s)	138, 159, 240, 254, 500
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	5 cut(s)	180, 264, 338, 467, 502
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	454
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.