Prupe.7G017900_v2.0.a1

Domain of unknown function (DUF309)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013514
Physical Location & Seq
Forward (+)
2596581 .. 2598078
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G017900.3

Sequence Viewer

Length: 792 bp
ATGGCGTTGCCAGCTGCTCTCAGTCTCAGTATTGCATCTCTCTCATCAATCTCAAGCCATCCACACTCTCATCTCCTCCCTTCTCATCAAATTAACTGCAGCTTCTCCTCTCCCTCTTCATGTATATACAGCAATCATACTAGTCATTCAAAGCCTTACAGAAGACTAACACCCTGCAGCCAGCACTTTTGTTTTCGTGTTTCGTATCGATTCTCTGCTGCTGCCGAAGGCGCGGACGACGACAGCGAAGAAGCAGAGGATGGTAGCTTCGATGAAGCTGTTGTCCTTTTCAACACAAGGGACTACTACAAGTGCCATGACTTCCTTGAGTCACTTTGGAACAATGCTGAGGAACCCACCAGAACTCTTATTCATGGCATTCTACAATGCGCTGTGGGATTCCATCATCTATTCAACCAGAATCATAAAGGAGCCATGATGGAGCTGGGAGAGGGACTTTGTAAGCTGAGAAAGATGAATTTCAAAAGTGGACCATTTTATCAGTTTGAGCAAGAAATCTCTGCAGCTCTGGATTTTATTTATCAAACACAGATAGAGTTGGCTGCCTGTACAGAGGATCTTTGTGTTACAATGGATCAATCAGAGAGATCATACCAACTTCTAGGTGGGTATGCTGCAGGTCAGCTACTATATACCCTGCAAAGTGACCCTAATGAAACCATGTATATTGTGTTTTCCCCTCACAGGTCTTATGACAGTGAGCCACCAAAGGTGAAGCTTCCAACCCTCAATGCAACCGCAGAACATCTCGTGGCCTGTCAATATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF309

Protein Analysis

264

Amino Acids

29.54

Weight (kDa)

5.54

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41120
fragaria_vesca FvH4_1g29750
malus_domestica MD12G1013500.v1.1
prunus_persica Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1
pyrus_communis pycom12g01080
rosa_chinensis RchiOBHm_Chr3g0495771
rosa_laevigata RLG00000022587
rosa_multiflora Rmu_co8355459.1_g000001
rosa_roxburghii Rroxscaffold_6G00390020
rosa_rugosa Rorug03G0276400
rosa_samantha Rh3AG323700 Rh3BG359300 Rh3CG355900 Rh3DG359100
rosa_wichuraiana Rw3G028300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 629
AccII CGCG 1 cut(s) 233
AciI CCGC 2 cut(s) 233, 759
AclWI GGATC 2 cut(s) 585, 603
AcsI RAATTY 1 cut(s) 478
AfaI GTAC 1 cut(s) 571
AfiI CCNNNNNNNGG 1 cut(s) 705
AgsI TTSAA 4 cut(s) 150, 292, 415, 484
AhlI ACTAGT 1 cut(s) 140
AluBI AGCT 9 cut(s) 14, 102, 267, 278, 445, 466, 527, 646, 739
AluI AGCT 9 cut(s) 14, 102, 267, 278, 445, 466, 527, 646, 739
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 2 cut(s) 585, 603
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 8 cut(s) 14, 99, 177, 218, 221, 524, 563, 635
ApoI RAATTY 1 cut(s) 478
AspLEI GCGC 2 cut(s) 233, 392
AspS9I GGNCC 1 cut(s) 491
AsuHPI GGTGA 1 cut(s) 745
AvaII GGWCC 1 cut(s) 491
BauI CACGAG 1 cut(s) 770
BbsI GAAGAC 1 cut(s) 169
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 7 cut(s) 111, 189, 205, 208, 536, 550, 622
BccI CCATC 4 cut(s) 66, 254, 411, 433
BcoDI GTCTC 1 cut(s) 29
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 2 cut(s) 141, 623
BfmI CTRYAG 4 cut(s) 97, 175, 522, 636
BfuAI ACCTGC 1 cut(s) 629
BisI GCNGC 8 cut(s) 15, 100, 178, 219, 222, 525, 564, 636
BlsI GCNGC 8 cut(s) 16, 101, 179, 220, 223, 526, 565, 637
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 2 cut(s) 354, 433
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 2 cut(s) 37, 347
Bsa29I ATCGAT 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 705
BseCI ATCGAT 1 cut(s) 208
BseGI GGATG 2 cut(s) 58, 265
BseLI CCNNNNNNNGG 1 cut(s) 705
BseMII CTCAG 4 cut(s) 34, 40, 339, 458
BseRI GAGGAG 2 cut(s) 65, 97
BseXI GCAGC 7 cut(s) 111, 189, 205, 208, 536, 550, 622
BseYI CCCAGC 1 cut(s) 445
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 776
BshVI ATCGAT 1 cut(s) 208
BslFI GGGAC 2 cut(s) 314, 468
BslI CCNNNNNNNGG 1 cut(s) 705
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 2 cut(s) 314, 468
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 1 cut(s) 776
Bsp1407I TGTACA 1 cut(s) 569
Bsp143I GATC 3 cut(s) 577, 595, 608
BspACI CCGC 2 cut(s) 233, 759
BspANI GGCC 1 cut(s) 776
BspCNI CTCAG 4 cut(s) 33, 39, 340, 459
BspDI ATCGAT 1 cut(s) 208
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 354, 433
BspMAI CTGCAG 4 cut(s) 101, 179, 526, 640
BspMI ACCTGC 1 cut(s) 629
BspPI GGATC 2 cut(s) 585, 603
BsrGI TGTACA 1 cut(s) 569
BssMI GATC 3 cut(s) 577, 595, 608
BssSI CACGAG 1 cut(s) 770
Bst2BI CACGAG 1 cut(s) 770
Bst4CI ACNGT 1 cut(s) 719
Bst6I CTCTTC 1 cut(s) 121
BstAUI TGTACA 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 12, 182
BstDEI CTNAG 4 cut(s) 20, 26, 348, 467
BstF5I GGATG 2 cut(s) 58, 265
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 2 cut(s) 233, 392
BstKTI GATC 3 cut(s) 580, 598, 611
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 3 cut(s) 577, 595, 608
BstMWI GCNNNNNNNGC 2 cut(s) 11, 230
BstSFI CTRYAG 4 cut(s) 97, 175, 522, 636
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 7 cut(s) 111, 189, 205, 208, 536, 550, 622
BstV2I GAAGAC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 208
BsuRI GGCC 1 cut(s) 776
BsuTUI ATCGAT 1 cut(s) 208
BtsCI GGATG 2 cut(s) 58, 265
BtsIMutI CAGTG 1 cut(s) 724
BveI ACCTGC 1 cut(s) 629
Cac8I GCNNGC 2 cut(s) 12, 182
CfoI GCGC 2 cut(s) 233, 392
Cfr13I GGNCC 1 cut(s) 491
ClaI ATCGAT 1 cut(s) 208
Csp6I GTAC 1 cut(s) 570
CviAII CATG 5 cut(s) 120, 317, 374, 436, 682
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 4 cut(s) 20, 26, 348, 467
DpnI GATC 3 cut(s) 579, 597, 610
DpnII GATC 3 cut(s) 577, 595, 608
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 491
FaeI CATG 5 cut(s) 123, 320, 377, 439, 685
FaqI GGGAC 2 cut(s) 314, 468
FatI CATG 5 cut(s) 119, 316, 373, 435, 681
Fnu4HI GCNGC 8 cut(s) 15, 100, 178, 219, 222, 525, 564, 636
FokI GGATG 2 cut(s) 45, 272
Fsp4HI GCNGC 8 cut(s) 15, 100, 178, 219, 222, 525, 564, 636
FspBI CTAG 2 cut(s) 141, 623
GlaI GCGC 2 cut(s) 232, 391
GluI GCNGC 8 cut(s) 15, 100, 178, 219, 222, 525, 564, 636
GsaI CCCAGC 1 cut(s) 449
HaeIII GGCC 1 cut(s) 776
HhaI GCGC 2 cut(s) 233, 392
Hin1II CATG 5 cut(s) 123, 320, 377, 439, 685
Hin6I GCGC 2 cut(s) 231, 390
HinP1I GCGC 2 cut(s) 231, 390
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 4 cut(s) 210, 329, 399, 421
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 1 cut(s) 604
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 1 cut(s) 491
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 90, 221
HpyCH4III ACNGT 1 cut(s) 719
HpyCH4V TGCA 7 cut(s) 35, 99, 177, 524, 638, 661, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 230
HpyF3I CTNAG 4 cut(s) 20, 26, 348, 467
Hsp92II CATG 5 cut(s) 123, 320, 377, 439, 685
HspAI GCGC 2 cut(s) 231, 390
Kzo9I GATC 3 cut(s) 577, 595, 608
LmnI GCTCC 2 cut(s) 431, 442
Lsp1109I GCAGC 7 cut(s) 111, 189, 205, 208, 536, 550, 622
LweI GCATC 1 cut(s) 44
MaeI CTAG 2 cut(s) 141, 623
MaeIII GTNAC 3 cut(s) 330, 586, 665
MalI GATC 3 cut(s) 579, 597, 610
MboI GATC 3 cut(s) 577, 595, 608
MboII GAAGA 3 cut(s) 108, 174, 260
MflI RGATCY 1 cut(s) 577
MluCI AATT 2 cut(s) 90, 478
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 767
MnlI CCTC 9 cut(s) 86, 118, 124, 250, 343, 445, 568, 711, 758
MseI TTAA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 378
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 11, 230
NdeII GATC 3 cut(s) 577, 595, 608
NlaIII CATG 5 cut(s) 123, 320, 377, 439, 685
NlaIV GGNNCC 2 cut(s) 354, 433
NmuCI GTSAC 2 cut(s) 330, 665
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 210, 399, 421
PkrI GCNGC 8 cut(s) 16, 101, 179, 220, 223, 526, 565, 637
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 354, 433
PspPI GGNCC 1 cut(s) 491
PstI CTGCAG 4 cut(s) 101, 179, 526, 640
PsuI RGATCY 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 8 cut(s) 15, 100, 178, 219, 222, 525, 564, 636
Sau3AI GATC 3 cut(s) 577, 595, 608
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 1 cut(s) 338
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 4 cut(s) 97, 175, 522, 636
SinI GGWCC 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 52, 326
SmoI CTYRAG 2 cut(s) 52, 326
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 2 cut(s) 90, 478
SsiI CCGC 2 cut(s) 233, 759
SspMI CTAG 2 cut(s) 141, 623
TaaI ACNGT 1 cut(s) 719
TaqI TCGA 2 cut(s) 208, 270
TasI AATT 2 cut(s) 90, 478
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 3 cut(s) 210, 399, 421
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 2 cut(s) 330, 665
TseI GCWGC 8 cut(s) 14, 99, 177, 218, 221, 524, 563, 635
Tsp45I GTSAC 2 cut(s) 330, 665
TspDTI ATGAA 5 cut(s) 108, 288, 362, 491, 690
TspRI CASTG 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 2 cut(s) 442, 623
XspI CTAG 2 cut(s) 141, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.