Rh3DG359100

Domain of unknown function (DUF309)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013514
Physical Location & Seq
Reverse (-)
44018717 .. 44019124
408 bp
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UTR
Exon/CDS
Intron
Rh3DG359100.1

Sequence Viewer

Length: 408 bp
ATGGCGTTTCCAGCTTCTGCTATCTGCAGTTTAACTAGTCCTGTTTTTTCTCGCTCATCGACCTCAAACTCTCTCCTCCCTTCTCAAACCAACCCAATCACCGTCTGCTCTTCTGAATATTATTCAAAGCCTTTCAGCAGCTACACAAGTCAACACAGCTGCAGGCACTACTCGTCTTGTTTTCGTATTTCATATCGATTCTCAGATGCTGGAGAAGGTGAAGACGAAGCTGAGGATTGCAGCTTTGATGAAGCAGTGGTCCTTTTCAACACAAGAGAATACTACAAGTGCCATGACTTTCTTGAGTCACTTTGGAACAAAGCTGAAGAACCCACCAGAACTCTTTTTCATGGTATTCTACAATGCGCCGTGGGATTCCATCACCTATTCAACCAGGTGCATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF309

Protein Analysis

135

Amino Acids

15.33

Weight (kDa)

5.54

Isoelectric Point (pI)

61.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF309 PF03745 82 - 132 5.6e-19 Domain of unknown function (DUF309)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41120
fragaria_vesca FvH4_1g29750
malus_domestica MD12G1013500.v1.1
prunus_persica Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1 Prupe.7G017900_v2.0.a1
pyrus_communis pycom12g01080
rosa_chinensis RchiOBHm_Chr3g0495771
rosa_laevigata RLG00000022587
rosa_multiflora Rmu_co8355459.1_g000001
rosa_roxburghii Rroxscaffold_6G00390020
rosa_rugosa Rorug03G0276400
rosa_samantha Rh3AG323700 Rh3BG359300 Rh3CG355900 Rh3DG359100
rosa_wichuraiana Rw3G028300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 345
AgsI TTSAA 3 cut(s) 126, 268, 391
AhlI ACTAGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 6 cut(s) 14, 141, 159, 230, 243, 323
AluI AGCT 6 cut(s) 14, 141, 159, 230, 243, 323
AlwNI CAGNNNCTG 2 cut(s) 17, 209
ApeKI GCWGC 3 cut(s) 138, 159, 240
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 3 cut(s) 91, 230, 374
AvaII GGWCC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 146, 150, 252
BccI CCATC 1 cut(s) 387
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 395
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 2 cut(s) 25, 160
BisI GCNGC 3 cut(s) 139, 160, 241
BlsI GCNGC 3 cut(s) 140, 161, 242
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 395
BseCI ATCGAT 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 216, 222
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 146, 150, 252
BshVI ATCGAT 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 215, 223
BspDI ATCGAT 1 cut(s) 196
BspMAI CTGCAG 2 cut(s) 29, 164
BspQI GCTCTTC 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 2 cut(s) 202, 231
BstDSI CCRYGG 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 2 cut(s) 25, 160
BstV1I GCAGC 3 cut(s) 146, 150, 252
BstV2I GAAGAC 1 cut(s) 228
Bsu15I ATCGAT 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 369
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 164
CaiI CAGNNNCTG 2 cut(s) 17, 209
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 196
CsiI ACCWGGT 1 cut(s) 393
CviAII CATG 2 cut(s) 293, 350
CviJI RGCY 7 cut(s) 14, 130, 141, 159, 230, 243, 323
CviKI_1 RGCY 7 cut(s) 14, 130, 141, 159, 230, 243, 323
DdeI CTNAG 2 cut(s) 202, 231
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 393
FaeI CATG 2 cut(s) 296, 353
FaiI YATR 4 cut(s) 193, 294, 351, 402
FatI CATG 2 cut(s) 292, 349
Fnu4HI GCNGC 3 cut(s) 139, 160, 241
Fsp4HI GCNGC 3 cut(s) 139, 160, 241
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 367
GluI GCNGC 3 cut(s) 139, 160, 241
GsuI CTGGAG 1 cut(s) 231
HhaI GCGC 1 cut(s) 368
Hin1II CATG 2 cut(s) 296, 353
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HinfI GANTC 3 cut(s) 198, 305, 375
HphI GGTGA 3 cut(s) 91, 230, 374
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 115, 205
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 90, 209
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 4 cut(s) 27, 162, 240, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 202, 231
Hsp92II CATG 2 cut(s) 296, 353
HspAI GCGC 1 cut(s) 366
LguI GCTCTTC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 24, 54, 148, 195, 349, 380
Lsp1109I GCAGC 3 cut(s) 146, 150, 252
LweI GCATC 1 cut(s) 196
MabI ACCWGGT 1 cut(s) 393
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 306
MboII GAAGA 3 cut(s) 102, 233, 338
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 3 cut(s) 73, 86, 226
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 395
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 296, 353
NmuCI GTSAC 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 198, 375
PkrI GCNGC 3 cut(s) 140, 161, 242
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
PspPI GGNCC 1 cut(s) 259
PstI CTGCAG 2 cut(s) 29, 164
PstNI CAGNNNCTG 2 cut(s) 17, 209
PvuII CAGCTG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 3 cut(s) 139, 160, 241
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 395
SexAI ACCWGGT 1 cut(s) 393
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 2 cut(s) 25, 160
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 35
SspI AATATT 1 cut(s) 119
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 59, 196
TfiI GAWTC 2 cut(s) 198, 375
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 3 cut(s) 138, 159, 240
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 3 cut(s) 180, 264, 338
TspRI CASTG 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 259
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.