Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012151

Physical Location & Seq

Genomic Coordinates Forward (+)

17143157 .. 17145283

Gene Structure 2127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCAACCAGAGACCTCAGATCAGATGTTGTACTCGTTTCTTGCCGGAAACGAAGTCGGCGGTGGAGGGTACTGCGTCTCCGGCGACTACATGACGACTATGCAGAGCTTATGTGGGTCTTCGTCGTCGACGTCATCGTATTACCCACTGGCGATCTCCGGCATCGGAGAAACGATGGCTCAAGACAGAGCTTTAGCTGCTTTGAGGAACCACAAAGAAGCTGAGAGAAGAAGGAGAGAGAGGATCAATTCTCATCTCAACAAGCTTCGTAACGTACTCTCTTGTAATTCTAAGACCGATAAAGCCACACTGCTCGCCAAAGTAGTTCAACGAGTCAGAGAACTTAAACAGCAAACCCTAGAGACCTCCGACTCCGACCAAACATTATTACCATCAGAGACCGACGAAATTAGTGTTCTACACTTTGGAGACTATTCAAACGACGGTCATATAATCTTCAAAGCCTCTCTATGTTGTGAAGATAGATCAGATCTCTTGCCGGACCTTATGGAGATTCTCAAGTCTCTTAACATGAAGACTCTCCGAGCTGAGATGGTAACCATTGGTGGTCGGACAAGAAGTGTTCTTGTCGTAGCTGCTGACAAAGAGATGCACGGCGTCGAGTCTGTGCATTTTTTGCAAAATGCTCTCAAGTCGCTGCTTGAGCGGTCAAGCAAGTCGTTGATGGAACGTAGTTCTGGTGGTGGAGGAGGAGAACGGTCAAAGCGGCGTCGTGCGCTGGATCACATCATAATGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009889 GO:0009941 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

253

Amino Acids

27.98

Weight (kDa)

7.68

Isoelectric Point (pI)

60.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	69 - 116	1.1e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41130 AT3G56770
fragaria_vesca	FvH4_3g28400
malus_domestica	MD12G1095300.v1.1 MD14G1091000.v1.1
prunus_persica	Prupe.7G031500_v2.0.a1
pyrus_communis	pycom12g08210 pycom14g08270
rosa_chinensis	RchiOBHm_Chr5g0053301
rosa_laevigata	RLG00000034769
rosa_multiflora	Rmu_co8065512.1_g000001 Rmu_sc0001966.1_g000015
rosa_roxburghii	Rroxscaffold_1G00029060
rosa_rugosa	Rorug05G0267500
rosa_samantha	Rh5AG340100 Rh5BG350800 Rh5CG376900 Rh5DG364700
rosa_wichuraiana	Rw5G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
AccBSI	CCGCTC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	3 cut(s)	60, 667, 727
AclWI	GGATC	2 cut(s)	251, 750
AcyI	GRCGYC	3 cut(s)	131, 618, 730
AfaI	GTAC	3 cut(s)	32, 71, 276
AgsI	TTSAA	3 cut(s)	329, 438, 460
AluBI	AGCT	7 cut(s)	108, 191, 197, 221, 265, 548, 596
AluI	AGCT	7 cut(s)	108, 191, 197, 221, 265, 548, 596
Alw26I	GTCTC	6 cut(s)	5, 82, 356, 392, 423, 528
AlwI	GGATC	2 cut(s)	251, 750
ApeKI	GCWGC	3 cut(s)	197, 596, 658
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	502
BbsI	GAAGAC	2 cut(s)	111, 542
BbvI	GCAGC	3 cut(s)	184, 583, 645
BccI	CCATC	4 cut(s)	169, 400, 547, 679
BceAI	ACGGC	1 cut(s)	631
BcoDI	GTCTC	6 cut(s)	5, 82, 356, 392, 423, 528
BfaI	CTAG	1 cut(s)	359
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	4 cut(s)	198, 597, 659, 728
BlsI	GCNGC	4 cut(s)	199, 598, 660, 729
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	209
BmsI	GCATC	2 cut(s)	171, 600
BpiI	GAAGAC	2 cut(s)	111, 542
BpuEI	CTTGAG	4 cut(s)	165, 503, 635, 683
BsaHI	GRCGYC	3 cut(s)	131, 618, 730
BsaI	GGTCTC	3 cut(s)	5, 356, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bse1I	ACTGG	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	30, 213, 540
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	2 cut(s)	723, 726
BseXI	GCAGC	3 cut(s)	184, 583, 645
BsiSI	CCGG	4 cut(s)	45, 81, 159, 500
BsmAI	GTCTC	6 cut(s)	5, 82, 356, 392, 423, 528
BsmBI	CGTCTC	1 cut(s)	82
Bso31I	GGTCTC	3 cut(s)	5, 356, 392
Bsp143I	GATC	6 cut(s)	19, 153, 243, 485, 490, 742
BspACI	CCGC	3 cut(s)	60, 667, 727
BspCNI	CTCAG	3 cut(s)	29, 214, 541
BspLI	GGNNCC	1 cut(s)	209
BspPI	GGATC	2 cut(s)	251, 750
BspTNI	GGTCTC	3 cut(s)	5, 356, 392
BsrBI	CCGCTC	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	153
BssMI	GATC	6 cut(s)	19, 153, 243, 485, 490, 742
BssNI	GRCGYC	3 cut(s)	131, 618, 730
Bst4CI	ACNGT	2 cut(s)	446, 720
BstACI	GRCGYC	3 cut(s)	131, 618, 730
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	4 cut(s)	16, 222, 291, 549
BstEII	GGTNACC	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	6 cut(s)	22, 156, 246, 488, 493, 745
BstMAI	GTCTC	6 cut(s)	5, 82, 356, 392, 423, 528
BstMBI	GATC	6 cut(s)	19, 153, 243, 485, 490, 742
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 197, 637, 664, 736
BstPI	GGTNACC	1 cut(s)	556
BstV1I	GCAGC	3 cut(s)	184, 583, 645
BstV2I	GAAGAC	2 cut(s)	111, 542
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	146, 308
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	502
CseI	GACGC	3 cut(s)	64, 607, 719
Csp6I	GTAC	3 cut(s)	31, 70, 275
CviAII	CATG	2 cut(s)	91, 532
CviQI	GTAC	3 cut(s)	31, 70, 275
DdeI	CTNAG	4 cut(s)	16, 222, 291, 549
DpnI	GATC	6 cut(s)	21, 155, 245, 487, 492, 744
DpnII	GATC	6 cut(s)	19, 153, 243, 485, 490, 742
Eco31I	GGTCTC	3 cut(s)	5, 356, 392
Eco47I	GGWCC	1 cut(s)	502
Eco91I	GGTNACC	1 cut(s)	556
EcoO65I	GGTNACC	1 cut(s)	556
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	94, 535
FaiI	YATR	9 cut(s)	92, 101, 112, 450, 452, 472, 509, 533, 752
FatI	CATG	2 cut(s)	90, 531
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	4 cut(s)	198, 597, 659, 728
Fsp4HI	GCNGC	4 cut(s)	198, 597, 659, 728
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	4 cut(s)	198, 597, 659, 728
HapII	CCGG	4 cut(s)	45, 81, 159, 500
HgaI	GACGC	3 cut(s)	64, 607, 719
HhaI	GCGC	1 cut(s)	739
Hin1I	GRCGYC	3 cut(s)	131, 618, 730
Hin1II	CATG	2 cut(s)	94, 535
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	5 cut(s)	333, 371, 514, 538, 623
HpaII	CCGG	4 cut(s)	45, 81, 159, 500
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	129
Hpy99I	CGWCG	7 cut(s)	127, 130, 133, 407, 446, 623, 735
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	2 cut(s)	446, 720
HpyCH4IV	ACGT	3 cut(s)	131, 273, 691
HpyCH4V	TGCA	5 cut(s)	4, 103, 613, 631, 640
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 197, 637, 664, 736
HpyF3I	CTNAG	4 cut(s)	16, 222, 291, 549
HpySE526I	ACGT	3 cut(s)	131, 273, 691
Hsp92I	GRCGYC	3 cut(s)	131, 618, 730
Hsp92II	CATG	2 cut(s)	94, 535
HspAI	GCGC	1 cut(s)	737
Kzo9I	GATC	6 cut(s)	19, 153, 243, 485, 490, 742
LpnPI	CCDG	8 cut(s)	21, 58, 94, 134, 172, 513, 684, 725
Lsp1109I	GCAGC	3 cut(s)	184, 583, 645
LweI	GCATC	2 cut(s)	171, 600
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	3 cut(s)	131, 273, 691
MaeIII	GTNAC	2 cut(s)	269, 556
MalI	GATC	6 cut(s)	21, 155, 245, 487, 492, 744
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	6 cut(s)	19, 153, 243, 485, 490, 742
MboII	GAAGA	5 cut(s)	111, 240, 448, 491, 547
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	3 cut(s)	247, 286, 408
MlyI	GAGTC	4 cut(s)	342, 365, 532, 632
MmeI	TCCRAC	3 cut(s)	393, 399, 551
MnlI	CCTC	8 cut(s)	25, 59, 198, 234, 376, 475, 701, 704
MseI	TTAA	2 cut(s)	345, 528
MslI	CAYNNNNRTG	2 cut(s)	752, 755
MspI	CCGG	4 cut(s)	45, 81, 159, 500
MwoI	GCNNNNNNNGC	5 cut(s)	81, 197, 637, 664, 736
NdeII	GATC	6 cut(s)	19, 153, 243, 485, 490, 742
NlaIII	CATG	2 cut(s)	94, 535
NlaIV	GGNNCC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 134
PfeI	GAWTC	1 cut(s)	514
PkrI	GCNGC	4 cut(s)	199, 598, 660, 729
PleI	GAGTC	4 cut(s)	341, 365, 532, 631
PpsI	GAGTC	4 cut(s)	341, 365, 532, 631
PspEI	GGTNACC	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	3 cut(s)	32, 71, 276
RsaNI	GTAC	3 cut(s)	31, 70, 275
RseI	CAYNNNNRTG	2 cut(s)	752, 755
SalI	GTCGAC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	345, 528
SatI	GCNGC	4 cut(s)	198, 597, 659, 728
Sau3AI	GATC	6 cut(s)	19, 153, 243, 485, 490, 742
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	4 cut(s)	342, 365, 532, 632
SfaNI	GCATC	2 cut(s)	171, 600
SgrDI	CGTCGACG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	502
SmiMI	CAYNNNNRTG	2 cut(s)	752, 755
SmlI	CTYRAG	4 cut(s)	180, 518, 650, 662
SmoI	CTYRAG	4 cut(s)	180, 518, 650, 662
Sse9I	AATT	3 cut(s)	247, 286, 408
SsiI	CCGC	3 cut(s)	60, 667, 727
SspMI	CTAG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	446, 720
TaiI	ACGT	3 cut(s)	134, 276, 694
TaqI	TCGA	2 cut(s)	128, 621
TaqII	GACCGA	2 cut(s)	311, 416
TasI	AATT	3 cut(s)	247, 286, 408
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	730
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	345, 528
Tru9I	TTAA	2 cut(s)	345, 528
TscAI	CASTG	2 cut(s)	153, 315
TseI	GCWGC	3 cut(s)	197, 596, 658
TspDTI	ATGAA	1 cut(s)	548
TspRI	CASTG	2 cut(s)	153, 315
VpaK11BI	GGWCC	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	1 cut(s)	359
ZraI	GACGTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.