Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012151

Physical Location & Seq

Genomic Coordinates Reverse (-)

21028902 .. 21030754

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCAGCCAGAGGTTTCAGATCAAATATTTTATGCCTTCCTCACCGGAGGATTATGTGCCTCGTCTACTTCCACCACCGTGACGTCGTCGTCTGACCCTTTTGCCACGGTTTATGAAGACAAAGCTCTTGCTTCTCTGAGGAACCATAAAGAGGCTGAGCGAAAGAGAAGAGCAAGAATCAATTCCCATCTCAACAAGCTCCGCAAGTTACTCTCTTGTAACTCCAAGACAGACAAATCCACACTACTAGCAAAAGTGGTTCAACGAGTCAAAGAACTAAAACAACAAACCCTAGAAATCACCGACGAAACAATACCGTCGGAGACTGACGAAATCAGTGTACTCAACATTGAGGACTGTTCCAGAGGCGACGATCGACGGATAATCTTTAAGGTATCGTTTTGCTGCGAGGACCGGCCAGAGCTCTTGAAAGATCTCATGGAGACACTCAAATCTCTTCAGATGGAAACTCTCTTTGCCGACATGACAACAGTCGGTGGTCGAACAAGAAACGTTCTCGTTGTGGCCGCTGACAAAGAGCATCACGGCGTCCAGTCGGTGAATTTTCTACAGAACGCACTCAAGTCTTTACTCGAACGGTCAAGCAAGTCGGTGATGGTGGGACATGGTGGTGGTGGTGGGGAAGAAAGGTTAAAACGACGTCGTGCGCTGGATCACATCATAATGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009889 GO:0009941 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

230

Amino Acids

25.75

Weight (kDa)

8.57

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	47 - 94	6.2e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41130 AT3G56770
fragaria_vesca	FvH4_3g28400
malus_domestica	MD12G1095300.v1.1 MD14G1091000.v1.1
prunus_persica	Prupe.7G031500_v2.0.a1
pyrus_communis	pycom12g08210 pycom14g08270
rosa_chinensis	RchiOBHm_Chr5g0053301
rosa_laevigata	RLG00000034769
rosa_multiflora	Rmu_co8065512.1_g000001 Rmu_sc0001966.1_g000015
rosa_roxburghii	Rroxscaffold_1G00029060
rosa_rugosa	Rorug05G0267500
rosa_samantha	Rh5AG340100 Rh5BG350800 Rh5CG376900 Rh5DG364700
rosa_wichuraiana	Rw5G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
AatII	GACGTC	2 cut(s)	86, 664
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	2 cut(s)	202, 528
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	1 cut(s)	681
AcoI	YGGCCR	2 cut(s)	416, 525
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	443
AcyI	GRCGYC	3 cut(s)	83, 549, 661
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	263, 430
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	3 cut(s)	125, 199, 424
AluI	AGCT	3 cut(s)	125, 199, 424
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	317, 437
AlwI	GGATC	1 cut(s)	681
AoxI	GGCC	2 cut(s)	416, 525
ApeKI	GCWGC	2 cut(s)	4, 405
ApoI	RAATTY	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	4 cut(s)	34, 292, 571, 625
AvaII	GGWCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	16, 392
BccI	CCATC	3 cut(s)	195, 457, 610
BceAI	ACGGC	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	317, 437
BfaI	CTAG	2 cut(s)	248, 293
BfmI	CTRYAG	1 cut(s)	569
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	3 cut(s)	5, 406, 528
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	3 cut(s)	6, 407, 529
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	143
BmsI	GCATC	1 cut(s)	550
BoxI	GACNNNNGTC	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	566
BsaHI	GRCGYC	3 cut(s)	83, 549, 661
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	553
BseDI	CCNNGG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	128, 147
BseNI	ACTGG	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	16, 392
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	2 cut(s)	418, 527
BsiEI	CGRYCG	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	2 cut(s)	45, 415
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	317, 437
BsmFI	GGGAC	1 cut(s)	636
BsnI	GGCC	2 cut(s)	418, 527
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	19, 373, 433, 673
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	202, 528
BspANI	GGCC	2 cut(s)	418, 527
BspCNI	CTCAG	2 cut(s)	129, 148
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	681
BspQI	GCTCTTC	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	4 cut(s)	19, 373, 433, 673
BssNI	GRCGYC	3 cut(s)	83, 549, 661
Bst4CI	ACNGT	6 cut(s)	79, 109, 318, 359, 493, 600
Bst6I	CTCTTC	2 cut(s)	163, 462
BstACI	GRCGYC	3 cut(s)	83, 549, 661
BstDEI	CTNAG	2 cut(s)	137, 156
BstDSI	CCRYGG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	4 cut(s)	22, 376, 436, 676
BstMAI	GTCTC	2 cut(s)	317, 437
BstMBI	GATC	4 cut(s)	19, 373, 433, 673
BstMCI	CGRYCG	1 cut(s)	376
BstPAI	GACNNNNGTC	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	569
BstV1I	GCAGC	2 cut(s)	16, 392
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	418, 527
BtgI	CCRYGG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	343
CfoI	GCGC	1 cut(s)	670
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	1 cut(s)	538
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	3 cut(s)	439, 484, 626
CviJI	RGCY	7 cut(s)	7, 125, 155, 199, 418, 424, 527
CviKI_1	RGCY	7 cut(s)	7, 125, 155, 199, 418, 424, 527
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	2 cut(s)	137, 156
DpnI	GATC	4 cut(s)	21, 375, 435, 675
DpnII	GATC	4 cut(s)	19, 373, 433, 673
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	2 cut(s)	416, 525
Eam1104I	CTCTTC	2 cut(s)	163, 462
EarI	CTCTTC	2 cut(s)	163, 462
Ecl136II	GAGCTC	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	426
FaeI	CATG	3 cut(s)	442, 487, 629
FaiI	YATR	8 cut(s)	33, 55, 114, 147, 440, 485, 627, 683
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	3 cut(s)	438, 483, 625
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	3 cut(s)	5, 406, 528
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	3 cut(s)	5, 406, 528
FspBI	CTAG	2 cut(s)	248, 293
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	3 cut(s)	5, 406, 528
HaeIII	GGCC	2 cut(s)	418, 527
HapII	CCGG	2 cut(s)	45, 415
HgaI	GACGC	1 cut(s)	538
HhaI	GCGC	1 cut(s)	670
Hin1I	GRCGYC	3 cut(s)	83, 549, 661
Hin1II	CATG	3 cut(s)	442, 487, 629
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HinfI	GANTC	2 cut(s)	177, 267
HpaII	CCGG	2 cut(s)	45, 415
HphI	GGTGA	4 cut(s)	34, 292, 571, 625
Hpy166II	GTNNAC	2 cut(s)	66, 341
Hpy188I	TCNGA	6 cut(s)	19, 94, 138, 322, 462, 692
Hpy188III	TCNNGA	2 cut(s)	363, 427
Hpy8I	GTNNAC	2 cut(s)	66, 341
Hpy99I	CGWCG	8 cut(s)	88, 91, 308, 322, 374, 381, 663, 666
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	6 cut(s)	79, 109, 318, 359, 493, 600
HpyCH4IV	ACGT	3 cut(s)	83, 513, 661
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	137, 156
HpySE526I	ACGT	3 cut(s)	83, 513, 661
Hsp92I	GRCGYC	3 cut(s)	83, 549, 661
Hsp92II	CATG	3 cut(s)	442, 487, 629
HspAI	GCGC	1 cut(s)	668
Kzo9I	GATC	4 cut(s)	19, 373, 433, 673
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	7 cut(s)	21, 58, 376, 428, 432, 566, 656
Lsp1109I	GCAGC	2 cut(s)	16, 392
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	2 cut(s)	248, 293
MaeII	ACGT	3 cut(s)	83, 513, 661
MaeIII	GTNAC	3 cut(s)	79, 207, 218
MalI	GATC	4 cut(s)	21, 375, 435, 675
MboI	GATC	4 cut(s)	19, 373, 433, 673
MboII	GAAGA	4 cut(s)	128, 180, 449, 656
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	2 cut(s)	181, 562
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	9 cut(s)	4, 41, 50, 70, 132, 145, 346, 359, 403
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	2 cut(s)	390, 653
MslI	CAYNNNNRTG	3 cut(s)	77, 630, 683
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	2 cut(s)	45, 415
NdeII	GATC	4 cut(s)	19, 373, 433, 673
NlaIII	CATG	3 cut(s)	442, 487, 629
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	177
PflFI	GACNNNGTC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	6, 407, 529
Ple19I	CGATCG	1 cut(s)	376
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PshAI	GACNNNNGTC	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	426
Psp1406I	AACGTT	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	85
PvuI	CGATCG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
RseI	CAYNNNNRTG	3 cut(s)	77, 630, 683
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	390, 653
SatI	GCNGC	3 cut(s)	5, 406, 528
Sau3AI	GATC	4 cut(s)	19, 373, 433, 673
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	9 cut(s)	15, 86, 127, 201, 396, 426, 516, 653, 664
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	569
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	3 cut(s)	77, 630, 683
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	2 cut(s)	181, 562
SsiI	CCGC	2 cut(s)	202, 528
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	2 cut(s)	248, 293
SstI	GAGCTC	1 cut(s)	426
TaaI	ACNGT	6 cut(s)	79, 109, 318, 359, 493, 600
TaiI	ACGT	3 cut(s)	86, 516, 664
TaqI	TCGA	3 cut(s)	376, 502, 594
TasI	AATT	2 cut(s)	181, 562
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	390, 653
Tru9I	TTAA	2 cut(s)	390, 653
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	4, 405
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	1 cut(s)	343
Tth111I	GACNNNGTC	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	2 cut(s)	248, 293
ZraI	GACGTC	2 cut(s)	84, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.