Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012151

Physical Location & Seq

Genomic Coordinates Reverse (-)

30191144 .. 30197595

Gene Structure 6452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0267500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGCTTCACAAGCCAGGCAAAAGAAGCAGCCTCACTTTGTCTTAGTGCCACTTATGGCACAAGGGCATATGATTCCCATGATAGACATGGCTAGGCTCTTCGCAGAGCGTGGTGTGATGGTTAGCTTGGTCACCACTCCATACAATGCCTCAAGATTTGAGTCATGCATTTCTCGAGCAAGAGATCAATCCGGACTTCTAATATCCATTGTGAAAATCCCATTTCCGTGCCAAGAAGTGGGACTTCCAATGGGAAGTGAGAGTCTTGACACCTTACCATCTCGAAATCTGCTGAGGAAGTTCTTTATGGCTCTGAGCATGCTGCAAGAACCACTAGAAAAGTACCTTGAAGACCAGAAGCTTCAGCCATGGTGCATAATCTCGGACAAGGCCCTCTCGTGGACTTCAAAAACAGCTCAGAAGTTCAATATTCCAAGGATTGTTTTCCATGGAATGTGTTGCTTCTCACTGCTGAGCTCTCACAACATCAAACTCTATAATGCTCACAATTCTAATCAAGAGGCTGAAGCGAAATCGTTTGGGGTGGTGGTGAATAGCTTTAATGCACTTGAACATGGGTGTGCTGAGGAGTTGGAGAAGGTGTTTGATAAAAAGGTTTGGTGCATTGGACCAGTTTCCTTATGCTACAAGAGCAATTCATATAGGTTTTCTAGAGGTAACAAATTCTCAATTGATGAGAGTCAATGCTTGCAATGGCTTGAATCAATGCAACCAAGGTCTGTCATCTATGTTTGTCTTGGTAGCCTTTGTAGATTAGTCCCATCACAACTGATAGAGCTTGGACTAGGCTTAGAAGCTTCAGGAAAACCCTTTATCTGGGTAATCAAAACATGTGGGAAGTATGAAGAATTGGAGAAGTGGTTAGTGGAGGAGAGGTTTGAGGAAAGGATCAAAGGAAGAGGCCTTTTGATCAAGGGTTGGGCTCCCCAAGTTCTTATTCTCTCAAGTCCAGCAATTGGAGGGTTCTTAACTCATTGTGGTTGGAACTCAAGCATAGAAGGGGCATGTTCTGGTGTGCCAATGATCACATGGCCTCTATTCGCTGAGCAATTCCTTAACGAAAAATTGATCGTAGAGGTTTTAAAGATCGGTGTTCGGGTTGGTGTGGAGATTCCTGTTAGATGGGGGGATGAAGAGAAAGTTGGAGTGTTGGTGAAGAAAGATGGGGTGAAGAAGGCAATACAAACACTGATGGATGGAGGTGAAGAAGGAGAAAAGAGAAGAAAGAGAGCAACAGAAATTGGAGAGAAGGGAAGAAGAGCCATGGAAAAAGGAGGTTCATCGCATTCAAGCATGTCTTCTTTGATTCAAGATGTTAGGCAATTACATGAAGCCACAGGTCAGAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009889 GO:0009941 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

457

Amino Acids

51.27

Weight (kDa)

8.81

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	243 - 365	6.6e-17	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41130 AT3G56770
fragaria_vesca	FvH4_3g28400
malus_domestica	MD12G1095300.v1.1 MD14G1091000.v1.1
prunus_persica	Prupe.7G031500_v2.0.a1
pyrus_communis	pycom12g08210 pycom14g08270
rosa_chinensis	RchiOBHm_Chr5g0053301
rosa_laevigata	RLG00000034769
rosa_multiflora	Rmu_co8065512.1_g000001 Rmu_sc0001966.1_g000015
rosa_roxburghii	Rroxscaffold_1G00029060
rosa_rugosa	Rorug05G0267500
rosa_samantha	Rh5AG340100 Rh5BG350800 Rh5CG376900 Rh5DG364700
rosa_wichuraiana	Rw5G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	238, 977
AccIII	TCCGGA	1 cut(s)	191
AclWI	GGATC	1 cut(s)	917
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	3 cut(s)	347, 546, 804
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	4 cut(s)	238, 399, 837, 977
AflIII	ACRYGT	1 cut(s)	851
AgsI	TTSAA	7 cut(s)	350, 408, 427, 572, 722, 1311, 1331
AjnI	CCWGG	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	4 cut(s)	942, 974, 1146, 1178
AluBI	AGCT	8 cut(s)	126, 361, 416, 477, 558, 799, 818, 1369
AluI	AGCT	8 cut(s)	126, 361, 416, 477, 558, 799, 818, 1369
Alw21I	GWGCWC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	917
Ama87I	CYCGRG	1 cut(s)	174
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	3 cut(s)	390, 922, 1052
ApeKI	GCWGC	2 cut(s)	28, 322
ApoI	RAATTY	1 cut(s)	683
AspS9I	GGNCC	2 cut(s)	391, 629
AsuHPI	GGTGA	5 cut(s)	124, 562, 1186, 1201, 1235
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	629
BanII	GRGCYC	2 cut(s)	479, 946
BauI	CACGAG	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	357, 1311
Bbv12I	GWGCWC	1 cut(s)	479
BbvCI	CCTCAGC	2 cut(s)	293, 585
BbvI	GCAGC	2 cut(s)	40, 309
BccI	CCATC	7 cut(s)	112, 286, 790, 1137, 1178, 1207, 1211
BciT130I	CCWGG	1 cut(s)	16
BclI	TGATCA	2 cut(s)	930, 1044
BfaI	CTAG	4 cut(s)	93, 335, 672, 806
BisI	GCNGC	2 cut(s)	29, 323
BlpI	GCTNAGC	2 cut(s)	473, 1065
BlsI	GCNGC	2 cut(s)	30, 324
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	391, 629
BmiI	GGNNCC	1 cut(s)	945
BmrFI	CCNGG	1 cut(s)	16
BpiI	GAAGAC	2 cut(s)	357, 1311
Bpu10I	CCTNAGC	2 cut(s)	293, 585
Bpu1102I	GCTNAGC	2 cut(s)	473, 1065
BpuEI	CTTGAG	3 cut(s)	136, 949, 994
BsaJI	CCNNGG	5 cut(s)	368, 434, 448, 734, 1284
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	8 cut(s)	587, 617, 866, 881, 896, 911, 1158, 1188
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 399, 837, 977
Bse1I	ACTGG	1 cut(s)	632
Bse3DI	GCAATG	1 cut(s)	719
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	5 cut(s)	368, 434, 448, 734, 1284
BseGI	GGATG	2 cut(s)	1156, 1222
BseLI	CCNNNNNNNGG	4 cut(s)	238, 399, 837, 977
BseMI	GCAATG	1 cut(s)	719
BseMII	CTCAG	6 cut(s)	284, 305, 431, 464, 576, 1056
BseNI	ACTGG	1 cut(s)	632
BseRI	GAGGAG	2 cut(s)	602, 905
BseXI	GCAGC	2 cut(s)	40, 309
BshFI	GGCC	3 cut(s)	392, 924, 1054
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	255, 764
BslI	CCNNNNNNNGG	4 cut(s)	238, 399, 837, 977
BsmFI	GGGAC	2 cut(s)	255, 764
BsmI	GAATGC	1 cut(s)	1306
BsnI	GGCC	3 cut(s)	392, 924, 1054
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	479, 946
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	6 cut(s)	184, 909, 930, 1044, 1089, 1107
Bsp1720I	GCTNAGC	2 cut(s)	473, 1065
Bsp19I	CCATGG	3 cut(s)	368, 448, 1284
BspANI	GGCC	3 cut(s)	392, 924, 1054
BspCNI	CTCAG	6 cut(s)	285, 306, 430, 465, 577, 1057
BspEI	TCCGGA	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	945
BspPI	GGATC	1 cut(s)	917
BspQI	GCTCTTC	2 cut(s)	104, 1273
BsrDI	GCAATG	1 cut(s)	719
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	5 cut(s)	368, 434, 448, 734, 1284
BssMI	GATC	6 cut(s)	184, 909, 930, 1044, 1089, 1107
BssSI	CACGAG	1 cut(s)	397
BssT1I	CCWWGG	5 cut(s)	368, 434, 448, 734, 1284
Bst2BI	CACGAG	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	16
Bst6I	CTCTTC	4 cut(s)	104, 913, 1149, 1273
BstC8I	GCNNGC	2 cut(s)	320, 710
BstDEI	CTNAG	8 cut(s)	43, 293, 314, 417, 473, 585, 811, 1065
BstDSI	CCRYGG	3 cut(s)	368, 448, 1284
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	1156, 1222
BstKTI	GATC	6 cut(s)	187, 912, 933, 1047, 1092, 1110
BstMBI	GATC	6 cut(s)	184, 909, 930, 1044, 1089, 1107
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 25, 651
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	4 cut(s)	322, 855, 1029, 1318
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	40, 309
BstV2I	GAAGAC	2 cut(s)	357, 1311
BsuRI	GGCC	3 cut(s)	392, 924, 1054
BtgI	CCRYGG	3 cut(s)	368, 448, 1284
BtgZI	GCGATG	1 cut(s)	1287
BtsCI	GGATG	2 cut(s)	1156, 1222
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	2 cut(s)	467, 1208
Cac8I	GCNNGC	2 cut(s)	320, 710
Cfr13I	GGNCC	2 cut(s)	391, 629
Csp6I	GTAC	1 cut(s)	343
CspCI	CAANNNNNGTGG	2 cut(s)	835, 870
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	8 cut(s)	43, 293, 314, 417, 473, 585, 811, 1065
DpnI	GATC	6 cut(s)	186, 911, 932, 1046, 1091, 1109
DpnII	GATC	6 cut(s)	184, 909, 930, 1044, 1089, 1107
DraI	TTTAAA	1 cut(s)	1104
Eam1104I	CTCTTC	4 cut(s)	104, 913, 1149, 1273
EarI	CTCTTC	4 cut(s)	104, 913, 1149, 1273
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	5 cut(s)	368, 434, 448, 734, 1284
Eco147I	AGGCCT	1 cut(s)	924
Eco24I	GRGCYC	2 cut(s)	479, 946
Eco47I	GGWCC	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	3 cut(s)	347, 546, 804
Eco88I	CYCGRG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	5 cut(s)	368, 434, 448, 734, 1284
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	2 cut(s)	479, 946
ErhI	CCWWGG	5 cut(s)	368, 434, 448, 734, 1284
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 1303, 1335
FaqI	GGGAC	2 cut(s)	255, 764
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	2 cut(s)	930, 1044
Fnu4HI	GCNGC	2 cut(s)	29, 323
FokI	GGATG	2 cut(s)	1163, 1229
FriOI	GRGCYC	2 cut(s)	479, 946
Fsp4HI	GCNGC	2 cut(s)	29, 323
FspBI	CTAG	4 cut(s)	93, 335, 672, 806
GluI	GCNGC	2 cut(s)	29, 323
HaeIII	GGCC	3 cut(s)	392, 924, 1054
HapII	CCGG	1 cut(s)	192
HindIII	AAGCTT	3 cut(s)	359, 816, 1367
HinfI	GANTC	7 cut(s)	73, 161, 262, 700, 722, 1132, 1327
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	5 cut(s)	124, 562, 1186, 1201, 1235
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	4 cut(s)	315, 385, 420, 1365
Hpy188III	TCNNGA	9 cut(s)	153, 174, 192, 266, 282, 518, 672, 822, 1331
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	5 cut(s)	592, 1013, 1189, 1223, 1264
HpyCH4V	TGCA	7 cut(s)	168, 325, 375, 566, 624, 712, 730
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 25, 651
HpyF3I	CTNAG	8 cut(s)	43, 293, 314, 417, 473, 585, 811, 1065
Kpn2I	TCCGGA	1 cut(s)	191
Ksp22I	TGATCA	2 cut(s)	930, 1044
Kzo9I	GATC	6 cut(s)	184, 909, 930, 1044, 1089, 1107
LguI	GCTCTTC	2 cut(s)	104, 1273
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	2 cut(s)	40, 309
MaeI	CTAG	4 cut(s)	93, 335, 672, 806
MaeIII	GTNAC	2 cut(s)	130, 677
MalI	GATC	6 cut(s)	186, 911, 932, 1046, 1091, 1109
MboI	GATC	6 cut(s)	184, 909, 930, 1044, 1089, 1107
MfeI	CAATTG	2 cut(s)	690, 975
MhlI	GDGCHC	2 cut(s)	479, 946
MlyI	GAGTC	3 cut(s)	170, 271, 709
MmeI	TCCRAC	3 cut(s)	573, 983, 1144
Mph1103I	ATGCAT	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	191
MseI	TTAA	5 cut(s)	561, 989, 1077, 1103, 1372
MslI	CAYNNNNRTG	2 cut(s)	226, 579
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	2 cut(s)	690, 975
Mva1269I	GAATGC	1 cut(s)	1306
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	3 cut(s)	11, 25, 651
NcoI	CCATGG	3 cut(s)	368, 448, 1284
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	6 cut(s)	184, 909, 930, 1044, 1089, 1107
NlaIV	GGNNCC	1 cut(s)	945
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	4 cut(s)	322, 855, 1029, 1318
PaeI	GCATGC	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	924
PciI	ACATGT	1 cut(s)	851
PciSI	GCTCTTC	2 cut(s)	104, 1273
PctI	GAATGC	1 cut(s)	1306
PfeI	GAWTC	4 cut(s)	73, 722, 1132, 1327
PflMI	CCANNNNNTGG	2 cut(s)	238, 977
PkrI	GCNGC	2 cut(s)	30, 324
PleI	GAGTC	3 cut(s)	169, 270, 708
PpsI	GAGTC	3 cut(s)	169, 270, 708
PscI	ACATGT	1 cut(s)	851
Psp124BI	GAGCTC	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	14
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	945
PspPI	GGNCC	2 cut(s)	391, 629
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	226, 579
SacI	GAGCTC	1 cut(s)	479
SapI	GCTCTTC	2 cut(s)	104, 1273
SaqAI	TTAA	5 cut(s)	561, 989, 1077, 1103, 1372
SatI	GCNGC	2 cut(s)	29, 323
Sau3AI	GATC	6 cut(s)	184, 909, 930, 1044, 1089, 1107
Sau96I	GGNCC	2 cut(s)	391, 629
SchI	GAGTC	3 cut(s)	170, 271, 709
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	479, 946
Sfr274I	CTCGAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	629
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	226, 579
SmlI	CTYRAG	4 cut(s)	151, 174, 964, 1009
SmoI	CTYRAG	4 cut(s)	151, 174, 964, 1009
SphI	GCATGC	1 cut(s)	322
SseBI	AGGCCT	1 cut(s)	924
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	4 cut(s)	93, 335, 672, 806
SstI	GAGCTC	1 cut(s)	479
StuI	AGGCCT	1 cut(s)	924
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	5 cut(s)	368, 434, 448, 734, 1284
TaqI	TCGA	2 cut(s)	175, 283
TfiI	GAWTC	4 cut(s)	73, 722, 1132, 1327
Tru1I	TTAA	5 cut(s)	561, 989, 1077, 1103, 1372
Tru9I	TTAA	5 cut(s)	561, 989, 1077, 1103, 1372
TscAI	CASTG	2 cut(s)	474, 1215
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	28, 322
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	5 cut(s)	648, 879, 1167, 1290, 1365
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	474, 1215
Van91I	CCANNNNNTGG	2 cut(s)	238, 977
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	1 cut(s)	683
XbaI	TCTAGA	1 cut(s)	671
XceI	RCATGY	4 cut(s)	322, 855, 1029, 1318
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 1047
XhoI	CTCGAG	1 cut(s)	174
XspI	CTAG	4 cut(s)	93, 335, 672, 806
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.