Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012151

Physical Location & Seq

Genomic Coordinates Forward (+)

21354830 .. 21356709

Gene Structure 1880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCAGCCGGAAAACCAAGAACTCTACCGCTTTCTGGCCCAGAACGGCTTAATCAATGGTCACCCGTATGGATCACTTCCCGGCGGAGTTGCTAACTGTGAGTTTTCATCTTCATCTTCAGCTGTTCCATTGCAGCAGAGCTTCTGCAGCTCCTCCTCTTACTACAGTAATAAGTACGCCTTGAATAATCTGGAGGCGTCTGGGGTACTCAGTACTACTAGTACTGATACTACTACACCTCACGATCGAGCCCAAGCTGCTCTCAACAATCACAAGGAGGCCGAGAAGAGAAGGAGAGAGAGAATTAATTCACACCTCGATAAGCTTCGATCACTTCTTCCATGTAATTCCAAGACAGACAAAGCATCGCTGTTAGCAAAGGTGGTCGAACGAGTGAAAGAGCTGAAACAACAAATGTCAGAAATCACAGAACTCGAAACCTTCCCTTCTGAAGCTGATGAAATCACTGTACTTTGCTCCAGTGAGGATGAGTATTCGAACAATGGAGGAATTATTTTCAAAGCCTCACTGTCCTGCGAGGACCGACCAGAACTCCTGCCTGATCTAATTGAGATACTAAAATCCCTCCATTTGAAGACACTTAAAGCTGAAATGGCAACTCTCGGAGGAAGAATTCGCAGTGTGCTTATCGTTGCCGCCGATAAGGATCACACCATCGAATCAGTTCCTTTCTTGCAGAATGCATTCAAGTCTTTATTAGAACGCTCAAACTCTAGTGAAAGATCAAAGAGGCGTCGCCGTGTTTTAGATCCAACGTTACTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009889 GO:0009941 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

263

Amino Acids

29.14

Weight (kDa)

6.61

Isoelectric Point (pI)

63.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	89 - 136	5.5e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41130 AT3G56770
fragaria_vesca	FvH4_3g28400
malus_domestica	MD12G1095300.v1.1 MD14G1091000.v1.1
prunus_persica	Prupe.7G031500_v2.0.a1
pyrus_communis	pycom12g08210 pycom14g08270
rosa_chinensis	RchiOBHm_Chr5g0053301
rosa_laevigata	RLG00000034769
rosa_multiflora	Rmu_co8065512.1_g000001 Rmu_sc0001966.1_g000015
rosa_roxburghii	Rroxscaffold_1G00029060
rosa_rugosa	Rorug05G0267500
rosa_samantha	Rh5AG340100 Rh5BG350800 Rh5CG376900 Rh5DG364700
rosa_wichuraiana	Rw5G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	28, 84, 657
AclI	AACGTT	1 cut(s)	776
AclWI	GGATC	3 cut(s)	79, 675, 764
AcsI	RAATTY	1 cut(s)	633
AcuI	CTGAAG	2 cut(s)	102, 471
AcyI	GRCGYC	2 cut(s)	197, 754
AfaI	GTAC	5 cut(s)	176, 207, 214, 223, 471
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	184, 520, 595, 709
AhlI	ACTAGT	1 cut(s)	218
AluBI	AGCT	8 cut(s)	122, 141, 150, 257, 325, 403, 455, 608
AluI	AGCT	8 cut(s)	122, 141, 150, 257, 325, 403, 455, 608
AlwI	GGATC	3 cut(s)	79, 675, 764
AoxI	GGCC	2 cut(s)	36, 279
ApeKI	GCWGC	4 cut(s)	4, 133, 147, 257
ApoI	RAATTY	1 cut(s)	633
AseI	ATTAAT	1 cut(s)	306
Asp700I	GAANNNNTTC	3 cut(s)	307, 684, 704
AspS9I	GGNCC	2 cut(s)	37, 541
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	602
BbvI	GCAGC	4 cut(s)	16, 145, 159, 244
BccI	CCATC	1 cut(s)	683
BceAI	ACGGC	2 cut(s)	61, 744
BcnI	CCSGG	1 cut(s)	81
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	3 cut(s)	219, 735, 787
BfmI	CTRYAG	2 cut(s)	145, 163
BisI	GCNGC	5 cut(s)	5, 134, 148, 258, 657
BlsI	GCNGC	5 cut(s)	6, 135, 149, 259, 658
BmcAI	AGTACT	2 cut(s)	214, 223
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	37, 541
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	602
BpmI	CTGGAG	2 cut(s)	212, 463
Bpu14I	TTCGAA	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	666
BsaHI	GRCGYC	2 cut(s)	197, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	666
BseGI	GGATG	1 cut(s)	493
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	2 cut(s)	142, 145
BseXI	GCAGC	4 cut(s)	16, 145, 159, 244
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	38, 281
BsiEI	CGRYCG	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	8, 81
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmI	GAATGC	2 cut(s)	704, 706
BsnI	GGCC	2 cut(s)	38, 281
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	7 cut(s)	71, 244, 329, 562, 667, 743, 769
BspACI	CCGC	3 cut(s)	28, 84, 657
BspANI	GGCC	2 cut(s)	38, 281
BspCNI	CTCAG	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	149
BspPI	GGATC	3 cut(s)	79, 675, 764
BspT104I	TTCGAA	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	480
BssMI	GATC	7 cut(s)	71, 244, 329, 562, 667, 743, 769
BssNI	GRCGYC	2 cut(s)	197, 754
Bst4CI	ACNGT	4 cut(s)	98, 167, 469, 531
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	2 cut(s)	197, 754
BstBI	TTCGAA	1 cut(s)	497
BstDEI	CTNAG	1 cut(s)	209
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	7 cut(s)	74, 247, 332, 565, 670, 746, 772
BstMBI	GATC	7 cut(s)	71, 244, 329, 562, 667, 743, 769
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 257, 614
BstPI	GGTNACC	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	2 cut(s)	145, 163
BstV1I	GCAGC	4 cut(s)	16, 145, 159, 244
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	769
BsuRI	GGCC	2 cut(s)	38, 281
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	646
BtsIMutI	CAGTG	4 cut(s)	465, 487, 527, 646
Cfr13I	GGNCC	2 cut(s)	37, 541
CseI	GACGC	2 cut(s)	186, 743
Csp6I	GTAC	5 cut(s)	175, 206, 213, 222, 470
CviAII	CATG	1 cut(s)	342
CviQI	GTAC	5 cut(s)	175, 206, 213, 222, 470
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	7 cut(s)	73, 246, 331, 564, 669, 745, 771
DpnII	GATC	7 cut(s)	71, 244, 329, 562, 667, 743, 769
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	541
Eco57I	CTGAAG	2 cut(s)	102, 471
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	633
EcoT22I	ATGCAT	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	253
FaeI	CATG	1 cut(s)	345
FaiI	YATR	2 cut(s)	69, 343
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	1 cut(s)	341
Fnu4HI	GCNGC	5 cut(s)	5, 134, 148, 258, 657
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	5 cut(s)	5, 134, 148, 258, 657
FspBI	CTAG	3 cut(s)	219, 735, 787
GluI	GCNGC	5 cut(s)	5, 134, 148, 258, 657
GsuI	CTGGAG	2 cut(s)	212, 463
HaeIII	GGCC	2 cut(s)	38, 281
HapII	CCGG	2 cut(s)	8, 81
HgaI	GACGC	2 cut(s)	186, 743
Hin1I	GRCGYC	2 cut(s)	197, 754
Hin1II	CATG	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	1 cut(s)	680
HpaII	CCGG	2 cut(s)	8, 81
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	3 cut(s)	421, 451, 626
Hpy188III	TCNNGA	2 cut(s)	191, 242
Hpy99I	CGWCG	1 cut(s)	759
HpyAV	CCTTC	3 cut(s)	285, 451, 456
HpyCH4III	ACNGT	4 cut(s)	98, 167, 469, 531
HpyCH4IV	ACGT	1 cut(s)	776
HpyCH4V	TGCA	5 cut(s)	4, 133, 147, 697, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 257, 614
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	776
Hsp92I	GRCGYC	2 cut(s)	197, 754
Hsp92II	CATG	1 cut(s)	345
Kzo9I	GATC	7 cut(s)	71, 244, 329, 562, 667, 743, 769
LmnI	GCTCC	2 cut(s)	155, 482
Lsp1109I	GCAGC	4 cut(s)	16, 145, 159, 244
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	3 cut(s)	219, 735, 787
MaeII	ACGT	1 cut(s)	776
MaeIII	GTNAC	2 cut(s)	59, 777
MalI	GATC	7 cut(s)	73, 246, 331, 564, 669, 745, 771
MboI	GATC	7 cut(s)	71, 244, 329, 562, 667, 743, 769
MboII	GAAGA	6 cut(s)	102, 108, 298, 329, 607, 642
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	6 cut(s)	303, 307, 346, 510, 567, 633
Mph1103I	ATGCAT	1 cut(s)	706
MroXI	GAANNNNTTC	3 cut(s)	307, 684, 704
MseI	TTAA	3 cut(s)	50, 306, 603
MslI	CAYNNNNRTG	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	2 cut(s)	8, 81
MspR9I	CCNGG	1 cut(s)	81
Mva1269I	GAATGC	2 cut(s)	704, 706
MwoI	GCNNNNNNNGC	3 cut(s)	147, 257, 614
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	7 cut(s)	71, 244, 329, 562, 667, 743, 769
NlaIII	CATG	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	706
NspV	TTCGAA	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	657
PctI	GAATGC	2 cut(s)	704, 706
PdmI	GAANNNNTTC	3 cut(s)	307, 684, 704
PfeI	GAWTC	1 cut(s)	680
PkrI	GCNGC	5 cut(s)	6, 135, 149, 259, 658
Ple19I	CGATCG	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	306
Psp1406I	AACGTT	1 cut(s)	776
PspEI	GGTNACC	1 cut(s)	59
PspPI	GGNCC	2 cut(s)	37, 541
PstI	CTGCAG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	769
PvuI	CGATCG	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	5 cut(s)	176, 207, 214, 223, 471
RsaNI	GTAC	5 cut(s)	175, 206, 213, 222, 470
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	50, 306, 603
SatI	GCNGC	5 cut(s)	5, 134, 148, 258, 657
Sau3AI	GATC	7 cut(s)	71, 244, 329, 562, 667, 743, 769
Sau96I	GGNCC	2 cut(s)	37, 541
ScaI	AGTACT	2 cut(s)	214, 223
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	1 cut(s)	374
SfcI	CTRYAG	2 cut(s)	145, 163
SfuI	TTCGAA	1 cut(s)	497
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	66
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	6 cut(s)	303, 307, 346, 510, 567, 633
SsiI	CCGC	3 cut(s)	28, 84, 657
SspMI	CTAG	3 cut(s)	219, 735, 787
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	4 cut(s)	98, 167, 469, 531
TaiI	ACGT	1 cut(s)	779
TaqI	TCGA	7 cut(s)	247, 318, 328, 387, 435, 497, 678
TaqII	GACCGA	1 cut(s)	558
TasI	AATT	6 cut(s)	303, 307, 346, 510, 567, 633
TatI	WGTACW	3 cut(s)	212, 221, 469
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	3 cut(s)	50, 306, 603
Tru9I	TTAA	3 cut(s)	50, 306, 603
TscAI	CASTG	4 cut(s)	472, 487, 534, 646
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	4 cut(s)	4, 133, 147, 257
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	96, 102, 474
TspRI	CASTG	4 cut(s)	472, 487, 534, 646
VpaK11BI	GGWCC	1 cut(s)	541
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	1 cut(s)	633
XmnI	GAANNNNTTC	3 cut(s)	307, 684, 704
XspI	CTAG	3 cut(s)	219, 735, 787
ZrmI	AGTACT	2 cut(s)	214, 223
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.