Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012151

Physical Location & Seq

Genomic Coordinates Forward (+)

5850418 .. 5852252

Gene Structure 1835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G031500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAGCCAGCTGATCATCAAAACCAAGAGCTCTACCGTTTTTTGGCCCAAAACGGGTTAATTAACATGAACAACAACAATGGTTCATATGTTGGGTTTCCAGGAGGAGCTAGCTGTGATCAGTTTTCAGCTATGCAAAGCTTTTGCAGCTCTTCTTCTTACAATTATTACCCTCTGGAGGTCTCTGGAGTTAGCACTGAACATGAAACCTCACCTCAAGACAGAGCCCTTGCTGCTCTCAAGAATCACAAGGAGGCTGAGAAGAGAAGGAGAGAGAGAATCAACTCCCATCTCGATAAGCTTCGAGGCCTTCTTCCTTGCAATTCCAAGACAGACAAAGCCTCGCTGTTAGCAAAGGTGGTTCAACGAGTGAAAGAGCTGAAACAACAAACTTCAGAGCTCACTGAGCTTGAGAGCTTCCCTTCTGAGACTGATGAAATCACTGTGCTCTCTTCGGATGATTATTCAAGTGATGGAAGAATTATTTTCAAGGCCTCGTTGTGCTGCGAGGACCGGACCGACCTCCTACCTGATCTAATTGAAATTCTAAAGTCCCTCCATCTCAAGACACTCAGAGCTGAAATGGCCACCCTCGGAGGAAGAATTCGCAACGTGCTTATCGTTGCTGCGGATAAAGATCACACCATTGAATCAGTCCATTTCTTGCAGAATGCGTTGAAGTCATTACTAGAACGCTCAAATGCTAGTGAAAGATCGAAAAGGCGACGCGTATTAGACCGCACATTAGTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009889 GO:0009941 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

252

Amino Acids

28.27

Weight (kDa)

7.05

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41130 AT3G56770
fragaria_vesca	FvH4_3g28400
malus_domestica	MD12G1095300.v1.1 MD14G1091000.v1.1
prunus_persica	Prupe.7G031500_v2.0.a1
pyrus_communis	pycom12g08210 pycom14g08270
rosa_chinensis	RchiOBHm_Chr5g0053301
rosa_laevigata	RLG00000034769
rosa_multiflora	Rmu_co8065512.1_g000001 Rmu_sc0001966.1_g000015
rosa_roxburghii	Rroxscaffold_1G00029060
rosa_rugosa	Rorug05G0267500
rosa_samantha	Rh5AG340100 Rh5BG350800 Rh5CG376900 Rh5DG364700
rosa_wichuraiana	Rw5G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	729
AciI	CCGC	2 cut(s)	629, 739
AcoI	YGGCCR	1 cut(s)	585
AcsI	RAATTY	2 cut(s)	543, 603
AcuI	CTGAAG	1 cut(s)	378
AfiI	CCNNNNNNNGG	3 cut(s)	43, 54, 178
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	6 cut(s)	365, 468, 490, 542, 650, 679
AjnI	CCWGG	1 cut(s)	100
Alw21I	GWGCWC	3 cut(s)	33, 402, 450
Alw26I	GTCTC	2 cut(s)	187, 422
AoxI	GGCC	4 cut(s)	45, 307, 492, 585
ApeKI	GCWGC	5 cut(s)	4, 147, 233, 504, 626
ApoI	RAATTY	2 cut(s)	543, 603
AspS9I	GGNCC	3 cut(s)	46, 511, 516
AsuHPI	GGTGA	1 cut(s)	204
AsuNHI	GCTAGC	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	511, 516
BalI	TGGCCA	1 cut(s)	587
BanII	GRGCYC	3 cut(s)	33, 229, 402
Bbv12I	GWGCWC	3 cut(s)	33, 402, 450
BbvI	GCAGC	5 cut(s)	16, 159, 220, 491, 613
BccI	CCATC	3 cut(s)	297, 467, 567
BciT130I	CCWGG	1 cut(s)	102
BclI	TGATCA	2 cut(s)	13, 118
BcoDI	GTCTC	2 cut(s)	187, 422
BfaI	CTAG	3 cut(s)	111, 689, 705
BisI	GCNGC	5 cut(s)	5, 148, 234, 505, 627
BlsI	GCNGC	5 cut(s)	6, 149, 235, 506, 628
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	2 cut(s)	511, 516
BmgT120I	GGNCC	3 cut(s)	46, 511, 516
BmrFI	CCNGG	1 cut(s)	102
BmtI	GCTAGC	1 cut(s)	114
BpmI	CTGGAG	2 cut(s)	197, 207
BpuEI	CTTGAG	4 cut(s)	201, 224, 431, 548
BsaBI	GATNNNNATC	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	592
BsaWI	WCCGGW	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 54, 178
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	592
BseGI	GGATG	1 cut(s)	463
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	3 cut(s)	43, 54, 178
BseMII	CTCAG	4 cut(s)	249, 396, 417, 586
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	5 cut(s)	16, 159, 220, 491, 613
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	4 cut(s)	47, 309, 494, 587
BsiHKAI	GWGCWC	3 cut(s)	33, 402, 450
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	3 cut(s)	43, 54, 178
BsmAI	GTCTC	2 cut(s)	187, 422
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	4 cut(s)	47, 309, 494, 587
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	4 cut(s)	33, 229, 402, 450
Bsp143I	GATC	5 cut(s)	13, 118, 532, 637, 713
BspACI	CCGC	2 cut(s)	629, 739
BspANI	GGCC	4 cut(s)	47, 309, 494, 587
BspCNI	CTCAG	4 cut(s)	250, 397, 418, 585
BspFNI	CGCG	1 cut(s)	729
BspOI	GCTAGC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	592
BssMI	GATC	5 cut(s)	13, 118, 532, 637, 713
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	38, 445
Bst6I	CTCTTC	3 cut(s)	157, 257, 457
BstC8I	GCNNGC	2 cut(s)	9, 112
BstDEI	CTNAG	4 cut(s)	258, 405, 426, 572
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	729
BstKTI	GATC	5 cut(s)	16, 121, 535, 640, 716
BstMAI	GTCTC	2 cut(s)	187, 422
BstMBI	GATC	5 cut(s)	13, 118, 532, 637, 713
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 233, 406, 584
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	5 cut(s)	16, 159, 220, 491, 613
BsuRI	GGCC	4 cut(s)	47, 309, 494, 587
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	3 cut(s)	195, 402, 441
Cac8I	GCNNGC	2 cut(s)	9, 112
Cfr13I	GGNCC	3 cut(s)	46, 511, 516
CpoI	CGGWCCG	1 cut(s)	516
CseI	GACGC	1 cut(s)	735
CspI	CGGWCCG	1 cut(s)	516
CviAII	CATG	2 cut(s)	67, 203
DdeI	CTNAG	4 cut(s)	258, 405, 426, 572
DpnI	GATC	5 cut(s)	15, 120, 534, 639, 715
DpnII	GATC	5 cut(s)	13, 118, 532, 637, 713
EaeI	YGGCCR	1 cut(s)	585
Eam1104I	CTCTTC	3 cut(s)	157, 257, 457
EarI	CTCTTC	3 cut(s)	157, 257, 457
Ecl136II	GAGCTC	2 cut(s)	31, 400
Eco147I	AGGCCT	2 cut(s)	309, 494
Eco24I	GRGCYC	3 cut(s)	33, 229, 402
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	511, 516
Eco53kI	GAGCTC	2 cut(s)	31, 400
Eco57I	CTGAAG	1 cut(s)	378
EcoICRI	GAGCTC	2 cut(s)	31, 400
EcoRI	GAATTC	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	100
EcoT38I	GRGCYC	3 cut(s)	33, 229, 402
FaeI	CATG	2 cut(s)	70, 206
FaiI	YATR	5 cut(s)	68, 88, 90, 134, 204
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	2 cut(s)	66, 202
FauNDI	CATATG	1 cut(s)	88
FbaI	TGATCA	2 cut(s)	13, 118
Fnu4HI	GCNGC	5 cut(s)	5, 148, 234, 505, 627
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	3 cut(s)	33, 229, 402
Fsp4HI	GCNGC	5 cut(s)	5, 148, 234, 505, 627
FspBI	CTAG	3 cut(s)	111, 689, 705
GluI	GCNGC	5 cut(s)	5, 148, 234, 505, 627
GsuI	CTGGAG	2 cut(s)	197, 207
HaeIII	GGCC	4 cut(s)	47, 309, 494, 587
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	735
Hin1II	CATG	2 cut(s)	70, 206
HindIII	AAGCTT	2 cut(s)	139, 299
HinfI	GANTC	3 cut(s)	244, 279, 650
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	1 cut(s)	204
Hpy188I	TCNGA	5 cut(s)	397, 427, 457, 575, 596
Hpy188III	TCNNGA	6 cut(s)	176, 186, 218, 241, 293, 565
Hpy99I	CGWCG	1 cut(s)	729
HpyAV	CCTTC	3 cut(s)	261, 320, 432
HpyCH4III	ACNGT	2 cut(s)	38, 445
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	5 cut(s)	4, 136, 147, 321, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 233, 406, 584
HpyF3I	CTNAG	4 cut(s)	258, 405, 426, 572
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	2 cut(s)	70, 206
Ksp22I	TGATCA	2 cut(s)	13, 118
Kzo9I	GATC	5 cut(s)	13, 118, 532, 637, 713
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	7 cut(s)	21, 87, 114, 161, 171, 527, 543
Lsp1109I	GCAGC	5 cut(s)	16, 159, 220, 491, 613
MaeI	CTAG	3 cut(s)	111, 689, 705
MaeII	ACGT	1 cut(s)	612
MalI	GATC	5 cut(s)	15, 120, 534, 639, 715
MboI	GATC	5 cut(s)	13, 118, 532, 637, 713
MboII	GAAGA	7 cut(s)	144, 147, 274, 305, 444, 489, 612
MhlI	GDGCHC	4 cut(s)	33, 229, 402, 450
MlsI	TGGCCA	1 cut(s)	587
MluCI	AATT	7 cut(s)	60, 163, 322, 480, 537, 543, 603
MluI	ACGCGT	1 cut(s)	727
MluNI	TGGCCA	1 cut(s)	587
Mox20I	TGGCCA	1 cut(s)	587
MscI	TGGCCA	1 cut(s)	587
MseI	TTAA	3 cut(s)	59, 63, 754
Msp20I	TGGCCA	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	4 cut(s)	147, 233, 406, 584
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	5 cut(s)	13, 118, 532, 637, 713
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	70, 206
PacI	TTAATTAA	1 cut(s)	63
PceI	AGGCCT	2 cut(s)	309, 494
PciSI	GCTCTTC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PctI	GAATGC	1 cut(s)	676
PfeI	GAWTC	3 cut(s)	244, 279, 650
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	5 cut(s)	6, 149, 235, 506, 628
Psp124BI	GAGCTC	2 cut(s)	33, 402
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspPI	GGNCC	3 cut(s)	46, 511, 516
PvuII	CAGCTG	1 cut(s)	11
Rsr2I	CGGWCCG	1 cut(s)	516
RsrII	CGGWCCG	1 cut(s)	516
SacI	GAGCTC	2 cut(s)	33, 402
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	3 cut(s)	59, 63, 754
SatI	GCNGC	5 cut(s)	5, 148, 234, 505, 627
Sau3AI	GATC	5 cut(s)	13, 118, 532, 637, 713
Sau96I	GGNCC	3 cut(s)	46, 511, 516
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	4 cut(s)	33, 229, 402, 450
SinI	GGWCC	2 cut(s)	511, 516
SmlI	CTYRAG	4 cut(s)	216, 239, 410, 563
SmoI	CTYRAG	4 cut(s)	216, 239, 410, 563
Sse9I	AATT	7 cut(s)	60, 163, 322, 480, 537, 543, 603
SseBI	AGGCCT	2 cut(s)	309, 494
SsiI	CCGC	2 cut(s)	629, 739
SspMI	CTAG	3 cut(s)	111, 689, 705
SstI	GAGCTC	2 cut(s)	33, 402
StuI	AGGCCT	2 cut(s)	309, 494
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	38, 445
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	3 cut(s)	294, 304, 716
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	7 cut(s)	60, 163, 322, 480, 537, 543, 603
TfiI	GAWTC	3 cut(s)	244, 279, 650
Tru1I	TTAA	3 cut(s)	59, 63, 754
Tru9I	TTAA	3 cut(s)	59, 63, 754
TscAI	CASTG	3 cut(s)	202, 409, 448
TseI	GCWGC	5 cut(s)	4, 147, 233, 504, 626
TspDTI	ATGAA	4 cut(s)	75, 83, 219, 450
TspRI	CASTG	3 cut(s)	202, 409, 448
VpaK11BI	GGWCC	2 cut(s)	511, 516
XapI	RAATTY	2 cut(s)	543, 603
XspI	CTAG	3 cut(s)	111, 689, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.