Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8065512.1

Orthogroup ID

OG0012151

Physical Location & Seq

Genomic Coordinates Reverse (-)

78 .. 452

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8065512.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgtcagaaatcacagaactcgaaacgttcccttctgaaactgatgaaattactgtactttcctcgggtgaggatgattattcgagcaatggaggaattattttcaaagcatcattgtcctgcgaggaccgaccagaactcctatccgatctaattgaaatactaaaatccctccatttgaagacacttaaagctgaaatggcaactctcggaggaagaatccgcagtgtacttattgttgccgcggataaagatcacacaattgaatcagttcccttcttgcagaatgcattcaagtctttattagaacgctcgaactctagtgagagatcaaaaaggcgtcgccgtgtattagatccaacgttactcgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009889 GO:0009941 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

124

Amino Acids

13.82

Weight (kDa)

5.07

Isoelectric Point (pI)

77.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41130 AT3G56770
fragaria_vesca	FvH4_3g28400
malus_domestica	MD12G1095300.v1.1 MD14G1091000.v1.1
prunus_persica	Prupe.7G031500_v2.0.a1
pyrus_communis	pycom12g08210 pycom14g08270
rosa_chinensis	RchiOBHm_Chr5g0053301
rosa_laevigata	RLG00000034769
rosa_multiflora	Rmu_co8065512.1_g000001 Rmu_sc0001966.1_g000015
rosa_roxburghii	Rroxscaffold_1G00029060
rosa_rugosa	Rorug05G0267500
rosa_samantha	Rh5AG340100 Rh5BG350800 Rh5CG376900 Rh5DG364700
rosa_wichuraiana	Rw5G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	3 cut(s)	223, 243, 245
AclI	AACGTT	2 cut(s)	26, 362
AclWI	GGATC	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	340
AfaI	GTAC	2 cut(s)	57, 231
AgsI	TTSAA	5 cut(s)	106, 158, 181, 266, 295
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
AlwI	GGATC	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	64
Asp700I	GAANNNNTTC	2 cut(s)	270, 290
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	330
BfaI	CTAG	2 cut(s)	321, 373
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	63, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	63, 243
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	64
BsmI	GAATGC	2 cut(s)	290, 292
BsoBI	CYCGRG	1 cut(s)	64
Bsp143I	GATC	4 cut(s)	148, 253, 329, 355
BspACI	CCGC	3 cut(s)	223, 243, 245
BspFNI	CGCG	1 cut(s)	245
BspPI	GGATC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	63, 243
BssMI	GATC	4 cut(s)	148, 253, 329, 355
BssNI	GRCGYC	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	4 cut(s)	151, 256, 332, 358
BstMBI	GATC	4 cut(s)	148, 253, 329, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstUI	CGCG	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	127
Cfr42I	CCGCGG	1 cut(s)	246
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	56, 230
CviJI	RGCY	1 cut(s)	194
CviKI_1	RGCY	1 cut(s)	194
CviQI	GTAC	2 cut(s)	56, 230
DpnI	GATC	4 cut(s)	150, 255, 331, 357
DpnII	GATC	4 cut(s)	148, 253, 329, 355
Eco47I	GGWCC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	321, 373
GluI	GCNGC	1 cut(s)	243
HgaI	GACGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	219, 266
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	4 cut(s)	7, 37, 148, 212
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	2 cut(s)	42, 286
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	2 cut(s)	26, 362
HpyCH4V	TGCA	2 cut(s)	283, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpySE526I	ACGT	2 cut(s)	26, 362
Hsp92I	GRCGYC	1 cut(s)	340
KspI	CCGCGG	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	148, 253, 329, 355
LpnPI	CCDG	2 cut(s)	133, 147
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	321, 373
MaeII	ACGT	2 cut(s)	26, 362
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	4 cut(s)	150, 255, 331, 357
MboI	GATC	4 cut(s)	148, 253, 329, 355
MboII	GAAGA	2 cut(s)	193, 228
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	4 cut(s)	48, 96, 153, 261
MnlI	CCTC	6 cut(s)	64, 73, 86, 118, 182, 206
Mph1103I	ATGCAT	1 cut(s)	292
MroXI	GAANNNNTTC	2 cut(s)	270, 290
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	2 cut(s)	290, 292
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	4 cut(s)	148, 253, 329, 355
NsiI	ATGCAT	1 cut(s)	292
PctI	GAATGC	2 cut(s)	290, 292
PdmI	GAANNNNTTC	2 cut(s)	270, 290
PfeI	GAWTC	2 cut(s)	219, 266
PkrI	GCNGC	1 cut(s)	244
Psp1406I	AACGTT	2 cut(s)	26, 362
PspPI	GGNCC	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	2 cut(s)	57, 231
RsaNI	GTAC	2 cut(s)	56, 230
SacII	CCGCGG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	4 cut(s)	148, 253, 329, 355
Sau96I	GGNCC	1 cut(s)	127
SetI	ASST	3 cut(s)	29, 196, 365
SfaNI	GCATC	1 cut(s)	119
Sfr303I	CCGCGG	1 cut(s)	246
SgrBI	CCGCGG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	4 cut(s)	48, 96, 153, 261
SsiI	CCGC	3 cut(s)	223, 243, 245
SspMI	CTAG	2 cut(s)	321, 373
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	2 cut(s)	29, 365
TaqI	TCGA	3 cut(s)	21, 83, 314
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	4 cut(s)	48, 96, 153, 261
TatI	WGTACW	2 cut(s)	55, 229
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	219, 266
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	127
XmnI	GAANNNNTTC	2 cut(s)	270, 290
XspI	CTAG	2 cut(s)	321, 373
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.