Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012151

Physical Location & Seq

Genomic Coordinates Forward (+)

9277475 .. 9278889

Gene Structure 1415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCAGCCGGCTGATCATCAAGGCCAAGAACTCTACCGATTTCTTGCCCAAAACGGCTTAATCAACGTGAATAATGATCATCAGTTATCAGCTATGCAAAGCTTTTGCAGCTCTTCTTCTAATAATTATAGTTATTACCCTCTGGAAGTGTCTGGGGTAAGTACTGAGCATGACGCCTCACCTCAAGACAGAGCCCTTGCTGCTCTCAAGAATCACAAGGAAGCCGAGAAGAGAAGGAGAGAGCGAATCAACTCCCATCTCGATAAGCTTCGAGGCCTTCTTCCTTGCAATTCCAAGGCTGACAGACAAAGCCTCCCTGTTAGCCAAGGTGGTCCAGAGAGTGAAAGAGCTGAAACAACAAACGTCAGAGATCGATCAGAGCTCGAGACCTTCCCTTCTGAAACTGATGAAATCACTGTACTTTCTTCAAATGATTATACAAGCGATGGAAGAATTGTTTTCAAGGCCTCTTTGTGCTGCGAGGACCGCTCCGACCTCCTACCTGACCTAATTGAAATACTGAAATCCCTTCATTTGAGGACAATCAAAGCTGAAATTGCCACTCTTGGAGGAAGAATTCGCAACGTGCTTATTGTTGCCGCAGACAAAGATCACTCGATTGAATCAGTCCATTTCTTGCAGAATGCGTTGAAGTCATTACTTGAACGCTCCAACTCTAGTGAAAGATCAAAAAGAAGACGGGTATTAGACCGCACATTAGTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009889 GO:0009941 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

243

Amino Acids

27.24

Weight (kDa)

6.46

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	71 - 101	1.2e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41130 AT3G56770
fragaria_vesca	FvH4_3g28400
malus_domestica	MD12G1095300.v1.1 MD14G1091000.v1.1
prunus_persica	Prupe.7G031500_v2.0.a1
pyrus_communis	pycom12g08210 pycom14g08270
rosa_chinensis	RchiOBHm_Chr5g0053301
rosa_laevigata	RLG00000034769
rosa_multiflora	Rmu_co8065512.1_g000001 Rmu_sc0001966.1_g000015
rosa_roxburghii	Rroxscaffold_1G00029060
rosa_rugosa	Rorug05G0267500
rosa_samantha	Rh5AG340100 Rh5BG350800 Rh5CG376900 Rh5DG364700
rosa_wichuraiana	Rw5G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	489
AciI	CCGC	3 cut(s)	487, 600, 712
AcsI	RAATTY	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	2 cut(s)	163, 420
AgsI	TTSAA	6 cut(s)	429, 463, 515, 623, 652, 665
AluBI	AGCT	7 cut(s)	92, 102, 111, 268, 350, 382, 551
AluI	AGCT	7 cut(s)	92, 102, 111, 268, 350, 382, 551
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	3 cut(s)	22, 274, 465
ApeKI	GCWGC	4 cut(s)	4, 108, 200, 477
ApoI	RAATTY	1 cut(s)	576
AspS9I	GGNCC	2 cut(s)	332, 484
AsuHPI	GGTGA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	332, 484
BanII	GRGCYC	2 cut(s)	196, 384
BbsI	GAAGAC	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	4 cut(s)	16, 120, 187, 464
BccI	CCATC	2 cut(s)	264, 440
BceAI	ACGGC	1 cut(s)	70
BclI	TGATCA	2 cut(s)	13, 76
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	678
BisI	GCNGC	5 cut(s)	5, 109, 201, 478, 600
BlsI	GCNGC	5 cut(s)	6, 110, 202, 479, 601
BmcAI	AGTACT	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	332, 484
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	332, 484
BpiI	GAAGAC	1 cut(s)	703
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpuEI	CTTGAG	2 cut(s)	168, 191
Bsa29I	ATCGAT	1 cut(s)	373
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	294, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bse118I	RCCGGY	1 cut(s)	7
BseCI	ATCGAT	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	294, 325
BseMII	CTCAG	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	16, 120, 187, 464
BshFI	GGCC	3 cut(s)	24, 276, 467
BshVI	ATCGAT	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	3 cut(s)	24, 276, 467
Bso31I	GGTCTC	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	196, 384
Bsp143I	GATC	6 cut(s)	13, 76, 370, 374, 610, 686
BspACI	CCGC	3 cut(s)	487, 600, 712
BspANI	GGCC	3 cut(s)	24, 276, 467
BspCNI	CTCAG	1 cut(s)	157
BspDI	ATCGAT	1 cut(s)	373
BspQI	GCTCTTC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	294, 325
BssMI	GATC	6 cut(s)	13, 76, 370, 374, 610, 686
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	2 cut(s)	294, 325
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	2 cut(s)	118, 224
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	165
BstKTI	GATC	6 cut(s)	16, 79, 373, 377, 613, 689
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	6 cut(s)	13, 76, 370, 374, 610, 686
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 200, 486, 557
BstV1I	GCAGC	4 cut(s)	16, 120, 187, 464
BstV2I	GAAGAC	1 cut(s)	703
Bsu15I	ATCGAT	1 cut(s)	373
BsuRI	GGCC	3 cut(s)	24, 276, 467
BsuTUI	ATCGAT	1 cut(s)	373
BtgZI	GCGATG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	332, 484
ClaI	ATCGAT	1 cut(s)	373
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	162, 419
CviAII	CATG	1 cut(s)	170
CviQI	GTAC	2 cut(s)	162, 419
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	6 cut(s)	15, 78, 372, 376, 612, 688
DpnII	GATC	6 cut(s)	13, 76, 370, 374, 610, 686
Eam1104I	CTCTTC	2 cut(s)	118, 224
EarI	CTCTTC	2 cut(s)	118, 224
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	294, 325
Eco147I	AGGCCT	2 cut(s)	276, 467
Eco24I	GRGCYC	2 cut(s)	196, 384
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	2 cut(s)	332, 484
Eco53kI	GAGCTC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	576
EcoT14I	CCWWGG	2 cut(s)	294, 325
EcoT38I	GRGCYC	2 cut(s)	196, 384
ErhI	CCWWGG	2 cut(s)	294, 325
FaeI	CATG	1 cut(s)	173
FaiI	YATR	4 cut(s)	95, 129, 171, 438
FatI	CATG	1 cut(s)	169
FbaI	TGATCA	2 cut(s)	13, 76
Fnu4HI	GCNGC	5 cut(s)	5, 109, 201, 478, 600
FriOI	GRGCYC	2 cut(s)	196, 384
Fsp4HI	GCNGC	5 cut(s)	5, 109, 201, 478, 600
FspBI	CTAG	1 cut(s)	678
GluI	GCNGC	5 cut(s)	5, 109, 201, 478, 600
HaeIII	GGCC	3 cut(s)	24, 276, 467
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	173
HindIII	AAGCTT	2 cut(s)	100, 266
HinfI	GANTC	3 cut(s)	211, 246, 623
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	171
Hpy188I	TCNGA	4 cut(s)	368, 379, 400, 493
Hpy188III	TCNNGA	6 cut(s)	143, 185, 208, 260, 335, 385
HpyAV	CCTTC	5 cut(s)	228, 287, 400, 405, 539
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	3 cut(s)	66, 363, 585
HpyCH4V	TGCA	5 cut(s)	4, 97, 108, 288, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 200, 486, 557
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	3 cut(s)	66, 363, 585
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	2 cut(s)	13, 76
Kzo9I	GATC	6 cut(s)	13, 76, 370, 374, 610, 686
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	494, 674
LpnPI	CCDG	6 cut(s)	21, 128, 138, 330, 348, 516
Lsp1109I	GCAGC	4 cut(s)	16, 120, 187, 464
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	3 cut(s)	66, 363, 585
MalI	GATC	6 cut(s)	15, 78, 372, 376, 612, 688
MbiI	CCGCTC	1 cut(s)	489
MboI	GATC	6 cut(s)	13, 76, 370, 374, 610, 686
MboII	GAAGA	8 cut(s)	105, 108, 241, 272, 417, 462, 585, 708
MhlI	GDGCHC	2 cut(s)	196, 384
MluCI	AATT	6 cut(s)	124, 289, 453, 510, 555, 576
MmeI	TCCRAC	2 cut(s)	516, 696
MroNI	GCCGGC	1 cut(s)	7
MseI	TTAA	1 cut(s)	59
MspI	CCGG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	649
MwoI	GCNNNNNNNGC	4 cut(s)	108, 200, 486, 557
NaeI	GCCGGC	1 cut(s)	9
NdeII	GATC	6 cut(s)	13, 76, 370, 374, 610, 686
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	173
NmeAIII	GCCGAG	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	383
PceI	AGGCCT	2 cut(s)	276, 467
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	649
PdiI	GCCGGC	1 cut(s)	9
PfeI	GAWTC	3 cut(s)	211, 246, 623
PkrI	GCNGC	5 cut(s)	6, 110, 202, 479, 601
Psp124BI	GAGCTC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	332, 484
RsaI	GTAC	2 cut(s)	163, 420
RsaNI	GTAC	2 cut(s)	162, 419
SacI	GAGCTC	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	5 cut(s)	5, 109, 201, 478, 600
Sau3AI	GATC	6 cut(s)	13, 76, 370, 374, 610, 686
Sau96I	GGNCC	2 cut(s)	332, 484
ScaI	AGTACT	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	196, 384
Sfr274I	CTCGAG	1 cut(s)	383
SinI	GGWCC	2 cut(s)	332, 484
SlaI	CTCGAG	1 cut(s)	383
SmlI	CTYRAG	3 cut(s)	183, 206, 383
SmoI	CTYRAG	3 cut(s)	183, 206, 383
Sse9I	AATT	6 cut(s)	124, 289, 453, 510, 555, 576
SseBI	AGGCCT	2 cut(s)	276, 467
SsiI	CCGC	3 cut(s)	487, 600, 712
SspMI	CTAG	1 cut(s)	678
SstI	GAGCTC	1 cut(s)	384
StuI	AGGCCT	2 cut(s)	276, 467
StyI	CCWWGG	2 cut(s)	294, 325
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	3 cut(s)	69, 366, 588
TaqI	TCGA	5 cut(s)	261, 271, 373, 384, 617
TasI	AATT	6 cut(s)	124, 289, 453, 510, 555, 576
TatI	WGTACW	2 cut(s)	161, 418
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	3 cut(s)	211, 246, 623
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	4 cut(s)	4, 108, 200, 477
TspDTI	ATGAA	2 cut(s)	423, 521
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	332, 484
XapI	RAATTY	1 cut(s)	576
XhoI	CTCGAG	1 cut(s)	383
XspI	CTAG	1 cut(s)	678
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.