AT2G41200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015337
Physical Location & Seq
Forward (+)
17171625 .. 17173350
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41200.1

Sequence Viewer

Length: 486 bp
ATGGGTCAAGCTCTCAATACCGCAAAAGGTAAAGGAGAGGTAGACGCGAAAGACTTGGAAGCTATGGCTGAAAATTGCTACCGCAAACGCTTAGAAGAAAAAAATGACGATCAAGAATGGTCCTTTGGCGACTTCTACCGCATTGTGGCTGAAGCAGTCGAGGAAATTAACAGAAGACTCGGTGGCACTCAACTTAAGGTGCCAAGTGTTGAGAAACTACAACAAGCTTATGAGATACACAATCTCGGGCAGGGGAAGAAGCTATCGAAGGACGAGTTTCAGAAGCTTCTTCAAGAGGTTTTAATCGGAGTTGGGTTCACCGGCGTCGGAGGAGTAAAGGAATTTCTACTTTTCATCTTCGGAGTTCCTGCGATCGCCGTCTTCATTAAGAACCGTATAGCTCCGACGTCCGTTCCCAACGACTTGTTTATCCCCGCCATCACTTCCGCCACCGTCTTCCTCCTCGCCAAGCTCAATAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.86

Weight (kDa)

6.61

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7874 PF25284 23 - 161 2.7e-52 Family of unknown function (DUF7874)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41200
fragaria_vesca FvH4_6g45840 FvH4_6g45840
malus_domestica MD14G1087900.v1.1
prunus_persica Prupe.7G038600_v2.0.a1 Prupe.7G038600_v2.0.a1
pyrus_communis pycom14g07800
rosa_chinensis RchiOBHm_Chr2g0164041
rosa_laevigata RLG00000021434
rosa_multiflora Rmu_ssc0000432.1_g000009
rosa_roxburghii Rroxscaffold_2G00086810
rosa_samantha Rh2AG574500 Rh2BG585100 Rh2CG556000 Rh2DG594700
rosa_wichuraiana Rw2G047520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 410
AccB1I GGYRCC 1 cut(s) 199
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 47
AciI CCGC 5 cut(s) 21, 82, 139, 435, 447
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 171
AcyI GRCGYC 2 cut(s) 324, 407
AfiI CCNNNNNNNGG 1 cut(s) 145
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 293
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 7 cut(s) 11, 62, 227, 262, 286, 401, 472
AluI AGCT 7 cut(s) 11, 62, 227, 262, 286, 401, 472
Ama87I CYCGRG 1 cut(s) 245
ApoI RAATTY 1 cut(s) 341
AsiSI GCGATCGC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 120
BanI GGYRCC 1 cut(s) 199
BbsI GAAGAC 3 cut(s) 181, 373, 448
BccI CCATC 1 cut(s) 446
BceAI ACGGC 1 cut(s) 362
BfrI CTTAAG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 201
BpiI GAAGAC 3 cut(s) 181, 373, 448
BsaHI GRCGYC 2 cut(s) 324, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 145
BseRI GAGGAG 2 cut(s) 345, 452
Bsh1236I CGCG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 375
BshNI GGYRCC 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 245
Bsp143I GATC 2 cut(s) 109, 372
BspACI CCGC 5 cut(s) 21, 82, 139, 435, 447
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 199
BspTI CTTAAG 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 320
BssMI GATC 2 cut(s) 109, 372
BssNI GRCGYC 2 cut(s) 324, 407
Bst4CI ACNGT 2 cut(s) 395, 454
BstACI GRCGYC 2 cut(s) 324, 407
BstAFI CTTAAG 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 47
BstKTI GATC 2 cut(s) 112, 375
BstMBI GATC 2 cut(s) 109, 372
BstMCI CGRYCG 1 cut(s) 375
BstUI CGCG 1 cut(s) 47
BstV2I GAAGAC 3 cut(s) 181, 373, 448
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 2 cut(s) 53, 313
CviJI RGCY 9 cut(s) 11, 62, 68, 149, 227, 262, 286, 401, 472
CviKI_1 RGCY 9 cut(s) 11, 62, 68, 149, 227, 262, 286, 401, 472
DdeI CTNAG 1 cut(s) 91
DpnI GATC 2 cut(s) 111, 374
DpnII GATC 2 cut(s) 109, 372
EciI GGCGGA 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 245
FaiI YATR 4 cut(s) 65, 231, 398, 484
FauI CCCGC 1 cut(s) 442
FblI GTMKAC 1 cut(s) 42
HapII CCGG 1 cut(s) 321
HgaI GACGC 2 cut(s) 53, 313
Hin1I GRCGYC 2 cut(s) 324, 407
HindIII AAGCTT 2 cut(s) 225, 284
HinfI GANTC 1 cut(s) 177
HpaII CCGG 1 cut(s) 321
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 43, 318
Hpy188I TCNGA 5 cut(s) 282, 308, 329, 362, 405
Hpy188III TCNNGA 2 cut(s) 113, 293
Hpy8I GTNNAC 2 cut(s) 43, 318
Hpy99I CGWCG 2 cut(s) 329, 409
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 395, 454
HpyCH4IV ACGT 1 cut(s) 407
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 407
Hsp92I GRCGYC 2 cut(s) 324, 407
Kzo9I GATC 2 cut(s) 109, 372
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 3 cut(s) 236, 334, 381
MaeII ACGT 1 cut(s) 407
MalI GATC 2 cut(s) 111, 374
MboI GATC 2 cut(s) 109, 372
MboII GAAGA 7 cut(s) 107, 186, 268, 281, 349, 373, 448
MluCI AATT 3 cut(s) 73, 165, 341
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 307, 428
MnlI CCTC 6 cut(s) 31, 154, 289, 323, 470, 473
MseI TTAA 4 cut(s) 168, 195, 302, 387
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 47
NdeII GATC 2 cut(s) 109, 372
NlaIV GGNNCC 1 cut(s) 201
Ple19I CGATCG 1 cut(s) 375
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 120
PvuI CGATCG 1 cut(s) 375
RgaI GCGATCGC 1 cut(s) 375
SaqAI TTAA 4 cut(s) 168, 195, 302, 387
Sau3AI GATC 2 cut(s) 109, 372
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 171
SfaAI GCGATCGC 1 cut(s) 375
SgfI GCGATCGC 1 cut(s) 375
SgrAI CRCCGGYG 1 cut(s) 320
SinI GGWCC 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 3 cut(s) 73, 165, 341
SsiI CCGC 5 cut(s) 21, 82, 139, 435, 447
TaaI ACNGT 2 cut(s) 395, 454
TaiI ACGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 159, 266
TasI AATT 3 cut(s) 73, 165, 341
Tru1I TTAA 4 cut(s) 168, 195, 302, 387
Tru9I TTAA 4 cut(s) 168, 195, 302, 387
TspDTI ATGAA 2 cut(s) 343, 373
TspGWI ACGGA 1 cut(s) 400
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 42
ZraI GACGTC 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.