FvH4_6g45840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015337
Physical Location & Seq
Forward (+)
35096382 .. 35098563
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45840.t1

Sequence Viewer

Length: 489 bp
ATGGGCAATACCCTAAAGAAAATAACTCCTGGTGGAGGAACTGAGGAGAAAAAATGTAATGATATTACTAGCATAATAGACAGGTTTTACGCCGAGCATTTTGAAAACCTTTCAAAGGAACCAATTAGCCAAACTGAGTTCTACCGAGCTGTATGCGAAATCGTCGAAGAAATGAACAAACAGCGCAGTAACACACAGTTTCGCGTGCCATCGGAGCCGGTACTCAGGAGGGCATTCGAGGATAACCACAAAGTGAAAAACAGGTCATTGACAAAGGATGAGTTCGCGAAAATTCTGCAACAAGTGATAAAGGAAACTGGGTTTAGTGGTGTTGGAGCCAAGGACACACTGATTTACATCTTCGGGGTTCCCATAACTGCACTCTTAATCAAGCAAGCAGTAATGCCTAATGCAGTTAGGAATGACTATTTCATTCCAGGAATCACTTCTGCAACTGTTTTGGTGCTTGCCAAACTTAACAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.27

Weight (kDa)

9.06

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7874 PF25284 25 - 162 4.6e-57 Family of unknown function (DUF7874)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41200
fragaria_vesca FvH4_6g45840 FvH4_6g45840
malus_domestica MD14G1087900.v1.1
prunus_persica Prupe.7G038600_v2.0.a1 Prupe.7G038600_v2.0.a1
pyrus_communis pycom14g07800
rosa_chinensis RchiOBHm_Chr2g0164041
rosa_laevigata RLG00000021434
rosa_multiflora Rmu_ssc0000432.1_g000009
rosa_roxburghii Rroxscaffold_2G00086810
rosa_samantha Rh2AG574500 Rh2BG585100 Rh2CG556000 Rh2DG594700
rosa_wichuraiana Rw2G047520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 204, 287
AcsI RAATTY 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 35, 115
AgsI TTSAA 2 cut(s) 104, 114
AjnI CCWGG 2 cut(s) 28, 436
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
ApoI RAATTY 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 445
AspLEI GCGC 1 cut(s) 186
BccI CCATC 1 cut(s) 217
BcgI CGANNNNNNTGC 4 cut(s) 135, 169, 277, 311
BciT130I CCWGG 2 cut(s) 30, 438
BfaI CTAG 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 30, 438
BmiI GGNNCC 4 cut(s) 120, 216, 337, 369
BmrFI CCNGG 2 cut(s) 30, 438
BmrI ACTGGG 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 115
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 356
BseBI CCWGG 2 cut(s) 30, 438
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 35, 115
BseMII CTCAG 3 cut(s) 33, 126, 238
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 2 cut(s) 204, 287
BsiSI CCGG 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 35, 115
BsmI GAATGC 1 cut(s) 233
Bsp68I TCGCGA 1 cut(s) 287
BspCNI CTCAG 3 cut(s) 34, 127, 237
BspFNI CGCG 2 cut(s) 204, 287
BspLI GGNNCC 4 cut(s) 120, 216, 337, 369
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 30, 438
Bst4CI ACNGT 2 cut(s) 198, 457
BstC8I GCNNGC 3 cut(s) 206, 396, 468
BstDEI CTNAG 3 cut(s) 42, 135, 224
BstENI CCTNNNNNAGG 2 cut(s) 33, 113
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 2 cut(s) 204, 287
BstHHI GCGC 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 2 cut(s) 30, 438
BstSCI CCNGG 2 cut(s) 28, 436
BstUI CGCG 2 cut(s) 204, 287
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 347
BtuMI TCGCGA 1 cut(s) 287
Cac8I GCNNGC 3 cut(s) 206, 396, 468
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 217
Csp6I GTAC 1 cut(s) 221
CviJI RGCY 4 cut(s) 129, 149, 217, 338
CviKI_1 RGCY 4 cut(s) 129, 149, 217, 338
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 3 cut(s) 42, 135, 224
DraIII CACNNNGTG 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 339
EcoNI CCTNNNNNAGG 2 cut(s) 33, 113
EcoRII CCWGG 2 cut(s) 28, 436
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaiI YATR 3 cut(s) 74, 154, 374
FokI GGATG 1 cut(s) 290
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 185
HapII CCGG 1 cut(s) 218
HhaI GCGC 1 cut(s) 186
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 1 cut(s) 441
HpaII CCGG 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 226, 286
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 2 cut(s) 198, 457
HpyCH4V TGCA 4 cut(s) 298, 380, 413, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 3 cut(s) 42, 135, 224
HspAI GCGC 1 cut(s) 184
LmnI GCTCC 2 cut(s) 214, 335
LpnPI CCDG 9 cut(s) 15, 42, 67, 211, 231, 247, 303, 423, 450
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 188
MboII GAAGA 2 cut(s) 179, 352
MluCI AATT 2 cut(s) 123, 291
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 4 cut(s) 29, 37, 222, 232
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 3 cut(s) 386, 477, 487
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 30, 438
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 2 cut(s) 30, 438
MvnI CGCG 2 cut(s) 204, 287
MwoI GCNNNNNNNGC 1 cut(s) 214
NlaIV GGNNCC 4 cut(s) 120, 216, 337, 369
NmeAIII GCCGAG 1 cut(s) 118
NruI TCGCGA 1 cut(s) 287
PctI GAATGC 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 441
PfoI TCCNGGA 1 cut(s) 436
Psp6I CCWGG 2 cut(s) 28, 436
PspGI CCWGG 2 cut(s) 28, 436
PspN4I GGNNCC 4 cut(s) 120, 216, 337, 369
RruI TCGCGA 1 cut(s) 287
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 3 cut(s) 386, 477, 487
ScrFI CCNGG 2 cut(s) 30, 438
SetI ASST 4 cut(s) 86, 111, 151, 266
Sse9I AATT 2 cut(s) 123, 291
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 28, 436
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 198, 457
TaqI TCGA 2 cut(s) 165, 237
TasI AATT 2 cut(s) 123, 291
TfiI GAWTC 1 cut(s) 441
Tru1I TTAA 3 cut(s) 386, 477, 487
Tru9I TTAA 3 cut(s) 386, 477, 487
TscAI CASTG 1 cut(s) 354
TspDTI ATGAA 2 cut(s) 188, 421
TspRI CASTG 1 cut(s) 354
XagI CCTNNNNNAGG 2 cut(s) 33, 113
XapI RAATTY 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.