Rroxscaffold_2G00086810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015337
Physical Location & Seq
Reverse (-)
8990690 .. 8992989
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086810.1

Sequence Viewer

Length: 471 bp
ATGGGCAATATCCTGACTGGTAGCGGAGGTTCCGATGAGCAGAAGACTGCTGATATTAGAAGCATAGCAGAGACGTACTACGACGACAATATCAAAGGCAATGAATCTAATGAATCTGAGACTCGGTTCTACAGAGCTATATGCGAAATCGTCGAAAAAGTGAATTATCTACATGGTAACACACAACTTAAAGTGCCATCGGAGGAGGCACTCGATGCCATATTCAAGCTTAACCACAAAGGGCGAAAATTGACAAAGGATGAGTTCGGAAAATGTGTGCAACTAGTGATAAGGGAAGCAGGGATCAGTGGTTATGGAGCCAAGGACTCACTTATTTACATCTTCGGGGTTCCCACAACTGCACTCCTAATCAAGCACACAGTAATGCCTCGTGCAGTTTCGAATGACTACTTCATCCCAGCAGTCACTTCCGCAACTGCCTTGGTGCTCGCCAAACTTAACAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.16

Weight (kDa)

6.83

Isoelectric Point (pI)

28.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7874 PF25284 23 - 156 5.8e-48 Family of unknown function (DUF7874)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41200
fragaria_vesca FvH4_6g45840 FvH4_6g45840
malus_domestica MD14G1087900.v1.1
prunus_persica Prupe.7G038600_v2.0.a1 Prupe.7G038600_v2.0.a1
pyrus_communis pycom14g07800
rosa_chinensis RchiOBHm_Chr2g0164041
rosa_laevigata RLG00000021434
rosa_multiflora Rmu_ssc0000432.1_g000009
rosa_roxburghii Rroxscaffold_2G00086810
rosa_samantha Rh2AG574500 Rh2BG585100 Rh2CG556000 Rh2DG594700
rosa_wichuraiana Rw2G047520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 24, 432
AclWI GGATC 1 cut(s) 311
AfaI GTAC 1 cut(s) 77
AgsI TTSAA 1 cut(s) 226
AhlI ACTAGT 1 cut(s) 283
AluBI AGCT 2 cut(s) 137, 229
AluI AGCT 2 cut(s) 137, 229
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 2 cut(s) 65, 113
AlwI GGATC 1 cut(s) 311
AsuII TTCGAA 1 cut(s) 401
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 450
BccI CCATC 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 65, 113
BcuI ACTAGT 1 cut(s) 283
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 130
BmiI GGNNCC 3 cut(s) 31, 319, 351
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 50
Bpu14I TTCGAA 1 cut(s) 401
BsaJI CCNNGG 2 cut(s) 321, 441
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 321, 441
BseGI GGATG 2 cut(s) 265, 414
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 218
BseYI CCCAGC 1 cut(s) 418
BsgI GTGCAG 2 cut(s) 345, 414
BsiHKAI GWGCWC 1 cut(s) 450
BsmAI GTCTC 2 cut(s) 65, 113
BsmBI CGTCTC 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 1 cut(s) 303
BspACI CCGC 2 cut(s) 24, 432
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 3 cut(s) 31, 319, 351
BspPI GGATC 1 cut(s) 311
BspT104I TTCGAA 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 106
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 321, 441
BssMI GATC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 321, 441
Bst2BI CACGAG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 265, 414
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 2 cut(s) 65, 113
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 265, 414
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 450
Csp6I GTAC 1 cut(s) 76
CviAII CATG 1 cut(s) 173
CviJI RGCY 3 cut(s) 137, 229, 320
CviKI_1 RGCY 3 cut(s) 137, 229, 320
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 117
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
Eco130I CCWWGG 2 cut(s) 321, 441
EcoT14I CCWWGG 2 cut(s) 321, 441
ErhI CCWWGG 2 cut(s) 321, 441
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 1 cut(s) 176
FaiI YATR 6 cut(s) 65, 140, 142, 174, 221, 315
FatI CATG 1 cut(s) 172
FokI GGATG 2 cut(s) 272, 401
FspBI CTAG 1 cut(s) 284
GsaI CCCAGC 1 cut(s) 422
Hin1II CATG 1 cut(s) 176
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 4 cut(s) 104, 113, 121, 326
Hpy188I TCNGA 4 cut(s) 34, 118, 202, 269
Hpy188III TCNNGA 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 86, 155
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 280, 362, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 1 cut(s) 176
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 4 cut(s) 3, 26, 285, 432
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 176, 424
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 2 cut(s) 55, 334
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 2 cut(s) 163, 248
MlyI GAGTC 2 cut(s) 115, 320
MnlI CCTC 4 cut(s) 20, 196, 199, 399
MseI TTAA 4 cut(s) 189, 231, 459, 469
MslI CAYNNNNRTG 1 cut(s) 383
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 1 cut(s) 303
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 3 cut(s) 31, 319, 351
NmuCI GTSAC 1 cut(s) 424
NspV TTCGAA 1 cut(s) 401
PfeI GAWTC 2 cut(s) 104, 113
PleI GAGTC 2 cut(s) 115, 320
PpsI GAGTC 2 cut(s) 115, 320
PspFI CCCAGC 1 cut(s) 418
PspN4I GGNNCC 3 cut(s) 31, 319, 351
PsrI GAACNNNNNNTAC 2 cut(s) 13, 45
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 4 cut(s) 189, 231, 459, 469
Sau3AI GATC 1 cut(s) 303
SchI GAGTC 2 cut(s) 115, 320
SduI GDGCHC 1 cut(s) 450
SetI ASST 4 cut(s) 31, 77, 139, 231
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 383
SpeI ACTAGT 1 cut(s) 283
Sse9I AATT 2 cut(s) 163, 248
SsiI CCGC 2 cut(s) 24, 432
SspMI CTAG 1 cut(s) 284
StyI CCWWGG 2 cut(s) 321, 441
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 77
TaqI TCGA 3 cut(s) 153, 213, 401
TasI AATT 2 cut(s) 163, 248
TfiI GAWTC 2 cut(s) 104, 113
Tru1I TTAA 4 cut(s) 189, 231, 459, 469
Tru9I TTAA 4 cut(s) 189, 231, 459, 469
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 3 cut(s) 117, 126, 403
TspRI CASTG 1 cut(s) 313
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.