MD14G1087900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0015337
Physical Location & Seq
Reverse (-)
11001003 .. 11003042
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1087900.v1.1.491

Sequence Viewer

Length: 480 bp
ATGGGCCAAACCCTCAAGACATTGGCTCCTAGAACGGAGGAAAACAAGATTAAAGAAATTAGTCCCATAATCGAGGAGTTCTATAACACTCATTTTGCAGCTGGCACCGAGGAACCAACCACAACTGAATTCTACAGAGCAATATGCGAAGCTGTCGAAGAAATCAACAAACAGCTCGGTAGCACACAATTTTGCGTCCCAGAGGAAAGCAAACTCAAGAAAGCATACGAAGAACACCACCATGGCAAGGGAAGCTCTCTGAAAAGGGAAGAGTTTCAAAAGATTTTACAAGAAATAATTGTGGGTACAGGATTTACTGGTGTTGGAGCCAAAGACACACTCATATACATGTTTGGTGTTCCACTCACCGCTTTCCTCATCAAGCAAAGAATCATGCCTCGTGCAATTCCTAATGCTTTCTTCATTCCAGCCATCACGTCTGCTACTGCCTTCGTGCTCGCTAAACTTAACAAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.81

Weight (kDa)

6.91

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7874 PF25284 23 - 159 3.2e-58 Family of unknown function (DUF7874)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41200
fragaria_vesca FvH4_6g45840 FvH4_6g45840
malus_domestica MD14G1087900.v1.1
prunus_persica Prupe.7G038600_v2.0.a1 Prupe.7G038600_v2.0.a1
pyrus_communis pycom14g07800
rosa_chinensis RchiOBHm_Chr2g0164041
rosa_laevigata RLG00000021434
rosa_multiflora Rmu_ssc0000432.1_g000009
rosa_roxburghii Rroxscaffold_2G00086810
rosa_samantha Rh2AG574500 Rh2BG585100 Rh2CG556000 Rh2DG594700
rosa_wichuraiana Rw2G047520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AciI CCGC 1 cut(s) 369
AcsI RAATTY 1 cut(s) 128
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 247
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 1 cut(s) 278
AjiI CACGTC 1 cut(s) 438
AluBI AGCT 4 cut(s) 101, 152, 175, 255
AluI AGCT 4 cut(s) 101, 152, 175, 255
Alw21I GWGCWC 1 cut(s) 459
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 358
BanI GGYRCC 1 cut(s) 104
BauI CACGAG 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 440
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 133
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 4 cut(s) 27, 106, 114, 328
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 108, 241
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 108, 241
BseLI CCNNNNNNNGG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 459
BslFI GGGAC 2 cut(s) 48, 182
BslI CCNNNNNNNGG 1 cut(s) 247
BsmFI GGGAC 2 cut(s) 48, 182
BsnI GGCC 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 6
BspLI GGNNCC 4 cut(s) 27, 106, 114, 328
BspT107I GGYRCC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 108, 241
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 399
Bst6I CTCTTC 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 103, 459
BstDSI CCRYGG 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 241
BtrI CACGTC 1 cut(s) 438
Cac8I GCNNGC 2 cut(s) 103, 459
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 306
CviAII CATG 3 cut(s) 242, 349, 394
CviJI RGCY 8 cut(s) 6, 26, 101, 152, 175, 255, 329, 431
CviKI_1 RGCY 8 cut(s) 6, 26, 101, 152, 175, 255, 329, 431
CviQI GTAC 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 245, 352, 397
FaqI GGGAC 2 cut(s) 48, 182
FatI CATG 3 cut(s) 241, 348, 393
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 6
HgaI GACGC 1 cut(s) 184
Hin1II CATG 3 cut(s) 245, 352, 397
HinfI GANTC 1 cut(s) 390
HphI GGTGA 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 2 cut(s) 16, 217
HpyAV CCTTC 1 cut(s) 460
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 2 cut(s) 98, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 437
Hsp92II CATG 3 cut(s) 245, 352, 397
LmnI GCTCC 2 cut(s) 31, 326
LpnPI CCDG 5 cut(s) 87, 213, 294, 303, 441
Lsp1109I GCAGC 1 cut(s) 110
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 437
MboII GAAGA 4 cut(s) 170, 242, 281, 412
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 5 cut(s) 57, 128, 188, 297, 405
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 7 cut(s) 23, 31, 67, 103, 196, 386, 408
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 2 cut(s) 51, 468
MslI CAYNNNNRTG 2 cut(s) 240, 347
MspA1I CMGCKG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 252
NcoI CCATGG 1 cut(s) 241
NlaIII CATG 3 cut(s) 245, 352, 397
NlaIV GGNNCC 4 cut(s) 27, 106, 114, 328
NspI RCATGY 1 cut(s) 352
PciI ACATGT 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 390
PkrI GCNGC 1 cut(s) 100
PscI ACATGT 1 cut(s) 348
PspN4I GGNNCC 4 cut(s) 27, 106, 114, 328
PspPI GGNCC 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 2 cut(s) 240, 347
SaqAI TTAA 2 cut(s) 51, 468
SatI GCNGC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 459
SetI ASST 5 cut(s) 103, 154, 177, 257, 440
SfcI CTRYAG 1 cut(s) 133
SmiMI CAYNNNNRTG 2 cut(s) 240, 347
SmlI CTYRAG 2 cut(s) 14, 215
SmoI CTYRAG 2 cut(s) 14, 215
Sse9I AATT 5 cut(s) 57, 128, 188, 297, 405
SsiI CCGC 1 cut(s) 369
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 241
TaiI ACGT 1 cut(s) 440
TaqI TCGA 2 cut(s) 72, 156
TasI AATT 5 cut(s) 57, 128, 188, 297, 405
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 2 cut(s) 51, 468
Tru9I TTAA 2 cut(s) 51, 468
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 412
TspGWI ACGGA 1 cut(s) 50
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.