Prupe.7G038600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015337
Physical Location & Seq
Forward (+)
7157805 .. 7160194
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G038600.1

Sequence Viewer

Length: 552 bp
ATGGGCCAAACTCTAAAGAAATTAGCTCCTGGAACGGAGGAGAACAAGATTAAGGAAATTGGTCCCATAATAGAGAACTGCTATAAAACCCATTTTGCAGGCACCGTTGAGAAACCAACCTTTACGAACTTTTACCGAGCAATATGCGAAACTGTCGAGGAAATCAACAAGCAGCTTGGTAACACACAATTTTGCTTGCCAACGGAAAGCAAACTGAAGCAAAAATACGAAGAGAATTTTCCAGTAAGGATGTCCAACGTCAGTCAGATGGGTCTATATTTTAGAATGGGCATGAAGGACCACCACGACCAAGGCAAAGGAAGATCGTTGACAAGGGAAGAGTTTCAAAGGATTTTCCAAGATGTGATTTTTGGTACAGGATTTACTGGTGTAGGAGGAGCCAAGGACACACTGATTTACATCTTTGGTGTTCCACTCACTGCCTTGTTTGTCAAGCAACGACTGATGCCACGTGTCATTCCTAATGAGATTTTCATTCCATGCATCACCTCTGCCACTGTCTTCGTACTTGCTAAGCTCAACAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.79

Weight (kDa)

9.16

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41200
fragaria_vesca FvH4_6g45840 FvH4_6g45840
malus_domestica MD14G1087900.v1.1
prunus_persica Prupe.7G038600_v2.0.a1 Prupe.7G038600_v2.0.a1
pyrus_communis pycom14g07800
rosa_chinensis RchiOBHm_Chr2g0164041
rosa_laevigata RLG00000021434
rosa_multiflora Rmu_ssc0000432.1_g000009
rosa_roxburghii Rroxscaffold_2G00086810
rosa_samantha Rh2AG574500 Rh2BG585100 Rh2CG556000 Rh2DG594700
rosa_wichuraiana Rw2G047520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 236
AcvI CACGTG 1 cut(s) 473
AfaI GTAC 2 cut(s) 376, 528
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 3 cut(s) 26, 175, 538
AluI AGCT 3 cut(s) 26, 175, 538
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 342
AspS9I GGNCC 3 cut(s) 4, 62, 298
AsuHPI GGTGA 1 cut(s) 499
AvaII GGWCC 2 cut(s) 62, 298
BanI GGYRCC 1 cut(s) 101
BarI GAAGNNNNNNTAC 2 cut(s) 209, 241
BbrPI CACGTG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 514
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 262
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciT130I CCWGG 1 cut(s) 30
BisI GCNGC 1 cut(s) 173
BlpI GCTNAGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 2 cut(s) 62, 298
BmgT120I GGNCC 3 cut(s) 4, 62, 298
BmiI GGNNCC 3 cut(s) 64, 103, 400
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 2 cut(s) 456, 513
BpiI GAAGAC 1 cut(s) 514
Bpu1102I GCTNAGC 1 cut(s) 534
BsaAI YACGTR 1 cut(s) 473
BsaBI GATNNNNATC 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 310, 402
Bse1I ACTGG 2 cut(s) 242, 391
Bse8I GATNNNNATC 1 cut(s) 419
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 310, 402
BseGI GGATG 1 cut(s) 255
BseJI GATNNNNATC 1 cut(s) 419
BseNI ACTGG 2 cut(s) 242, 391
BseRI GAGGAG 2 cut(s) 53, 411
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 101
BslFI GGGAC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 1 cut(s) 6
Bsp143I GATC 1 cut(s) 323
Bsp1720I GCTNAGC 1 cut(s) 534
BspANI GGCC 1 cut(s) 6
BspLI GGNNCC 3 cut(s) 64, 103, 400
BspT107I GGYRCC 1 cut(s) 101
BsrI ACTGG 2 cut(s) 242, 391
BssECI CCNNGG 2 cut(s) 310, 402
BssMI GATC 1 cut(s) 323
BssT1I CCWWGG 2 cut(s) 310, 402
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 106, 154, 520
Bst6I CTCTTC 2 cut(s) 225, 333
BstBAI YACGTR 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 100, 197
BstDEI CTNAG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 1 cut(s) 326
BstMBI GATC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 3 cut(s) 410, 438, 516
Cac8I GCNNGC 2 cut(s) 100, 197
Cfr13I GGNCC 3 cut(s) 4, 62, 298
Csp6I GTAC 2 cut(s) 375, 527
CviAII CATG 2 cut(s) 292, 501
CviJI RGCY 5 cut(s) 6, 26, 175, 401, 538
CviKI_1 RGCY 5 cut(s) 6, 26, 175, 401, 538
CviQI GTAC 2 cut(s) 375, 527
DdeI CTNAG 1 cut(s) 534
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
Eam1104I CTCTTC 2 cut(s) 225, 333
EarI CTCTTC 2 cut(s) 225, 333
Eco130I CCWWGG 2 cut(s) 310, 402
Eco47I GGWCC 2 cut(s) 62, 298
Eco57I CTGAAG 1 cut(s) 236
Eco72I CACGTG 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 2 cut(s) 310, 402
EcoT22I ATGCAT 1 cut(s) 506
ErhI CCWWGG 2 cut(s) 310, 402
FaeI CATG 2 cut(s) 295, 504
FaiI YATR 7 cut(s) 68, 84, 145, 277, 293, 502, 550
FaqI GGGAC 1 cut(s) 48
FatI CATG 2 cut(s) 291, 500
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 6
Hin1II CATG 2 cut(s) 295, 504
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 1 cut(s) 267
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 3 cut(s) 106, 154, 520
HpyCH4IV ACGT 2 cut(s) 258, 472
HpyCH4V TGCA 2 cut(s) 98, 504
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 2 cut(s) 258, 472
Hsp92II CATG 2 cut(s) 295, 504
Kzo9I GATC 1 cut(s) 323
LmnI GCTCC 2 cut(s) 31, 398
LpnPI CCDG 6 cut(s) 15, 42, 84, 255, 363, 372
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 456, 513
MaeII ACGT 2 cut(s) 258, 472
MaeIII GTNAC 1 cut(s) 179
MalI GATC 1 cut(s) 325
MboI GATC 1 cut(s) 323
MboII GAAGA 4 cut(s) 242, 333, 350, 514
MluCI AATT 4 cut(s) 20, 57, 188, 235
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 4 cut(s) 31, 151, 389, 520
Mph1103I ATGCAT 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
NdeII GATC 1 cut(s) 323
NlaIII CATG 2 cut(s) 295, 504
NlaIV GGNNCC 3 cut(s) 64, 103, 400
NsiI ATGCAT 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 1 cut(s) 174
PmaCI CACGTG 1 cut(s) 473
PmlI CACGTG 1 cut(s) 473
Ppu21I YACGTR 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 28
PspCI CACGTG 1 cut(s) 473
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 64, 103, 400
PspPI GGNCC 3 cut(s) 4, 62, 298
RsaI GTAC 2 cut(s) 376, 528
RsaNI GTAC 2 cut(s) 375, 527
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 1 cut(s) 323
Sau96I GGNCC 3 cut(s) 4, 62, 298
ScrFI CCNGG 1 cut(s) 30
SetI ASST 7 cut(s) 28, 122, 177, 261, 475, 512, 540
SfaNI GCATC 2 cut(s) 456, 513
SinI GGWCC 2 cut(s) 62, 298
Sse9I AATT 4 cut(s) 20, 57, 188, 235
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 2 cut(s) 310, 402
TaaI ACNGT 3 cut(s) 106, 154, 520
TaiI ACGT 2 cut(s) 261, 475
TaqI TCGA 1 cut(s) 156
TasI AATT 4 cut(s) 20, 57, 188, 235
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 3 cut(s) 417, 445, 523
TseI GCWGC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 308, 484
TspGWI ACGGA 2 cut(s) 50, 218
TspRI CASTG 3 cut(s) 417, 445, 523
VpaK11BI GGWCC 2 cut(s) 62, 298
XapI RAATTY 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 342
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.