Rh2DG594700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015337
Physical Location & Seq
Forward (+)
82729064 .. 82731625
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG594700.1

Sequence Viewer

Length: 357 bp
ATGTTTAATCTTAATTCCATTTATTTTGGTAGAAAAATAAACCATCAACATAGTAACACACAAATTAACGTGCCAACGGAGAAGAAACTCAAGGAAGCATTTAAGGCTAACCACGGAGAAGGGAAAAAAGGAAAATTGACAAAGGAAGAGTTCGGAAGATGTGTGCAACAAGTGATAAGGGAAGCAGGGATCAGTGGTTATGGAGCCAAGGACTCACTTATTTACATCTTCGGGGTTCCCATAACTGCACTCTTAATCAAGCAATCAGTAATGCCTCGTGCAGTTTCGAATGACTTATTCATTCCAGGAGTCACTTCCGCAACTGCCTTGGTGCTCGCCAAACTTAACAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.0

Weight (kDa)

9.9

Isoelectric Point (pI)

15.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7874 PF25284 12 - 118 7.2e-43 Family of unknown function (DUF7874)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41200
fragaria_vesca FvH4_6g45840 FvH4_6g45840
malus_domestica MD14G1087900.v1.1
prunus_persica Prupe.7G038600_v2.0.a1 Prupe.7G038600_v2.0.a1
pyrus_communis pycom14g07800
rosa_chinensis RchiOBHm_Chr2g0164041
rosa_laevigata RLG00000021434
rosa_multiflora Rmu_ssc0000432.1_g000009
rosa_roxburghii Rroxscaffold_2G00086810
rosa_samantha Rh2AG574500 Rh2BG585100 Rh2CG556000 Rh2DG594700
rosa_wichuraiana Rw2G047520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 318
AclWI GGATC 1 cut(s) 197
AjnI CCWGG 1 cut(s) 304
Alw21I GWGCWC 1 cut(s) 336
AlwI GGATC 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 287
BauI CACGAG 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 336
BccI CCATC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 306
BmiI GGNNCC 2 cut(s) 205, 237
BmrFI CCNGG 1 cut(s) 306
Bpu14I TTCGAA 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 112, 207, 327
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 112, 207, 327
BsgI GTGCAG 2 cut(s) 231, 300
BsiHKAI GWGCWC 1 cut(s) 336
Bsp119I TTCGAA 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 205, 237
BspPI GGATC 1 cut(s) 197
BspT104I TTCGAA 1 cut(s) 287
BssECI CCNNGG 3 cut(s) 112, 207, 327
BssMI GATC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 207, 327
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 306
Bst6I CTCTTC 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 336
BstDSI CCRYGG 1 cut(s) 112
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BtgI CCRYGG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 336
CviJI RGCY 2 cut(s) 107, 206
CviKI_1 RGCY 2 cut(s) 107, 206
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 207, 327
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 207, 327
ErhI CCWWGG 2 cut(s) 207, 327
FaiI YATR 3 cut(s) 51, 201, 242
HinfI GANTC 2 cut(s) 212, 309
Hpy188I TCNGA 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 166, 248, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 69
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 3 cut(s) 171, 291, 318
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 53, 310
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 4 cut(s) 94, 158, 168, 220
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 3 cut(s) 13, 63, 134
MlyI GAGTC 2 cut(s) 206, 318
MnlI CCTC 1 cut(s) 285
MseI TTAA 7 cut(s) 6, 12, 66, 102, 254, 345, 355
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 189
NlaIV GGNNCC 2 cut(s) 205, 237
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 304
PleI GAGTC 2 cut(s) 206, 317
PpsI GAGTC 2 cut(s) 206, 317
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 205, 237
SaqAI TTAA 7 cut(s) 6, 12, 66, 102, 254, 345, 355
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 2 cut(s) 206, 318
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 336
SetI ASST 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 13, 63, 134
SsiI CCGC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 2 cut(s) 207, 327
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 287
TasI AATT 3 cut(s) 13, 63, 134
Tru1I TTAA 7 cut(s) 6, 12, 66, 102, 254, 345, 355
Tru9I TTAA 7 cut(s) 6, 12, 66, 102, 254, 345, 355
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 289
TspGWI ACGGA 2 cut(s) 92, 129
TspRI CASTG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.