AT2G41800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011779
Physical Location & Seq
Reverse (-)
17436443 .. 17438168
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41800.1

Sequence Viewer

Length: 1113 bp
ATGTCTCTCTATCACTCTCTTAGCATTTTCCTCCTCCTATCTCTCTGCCATGGCTCTTACAGTCTTCAACCACGTCGAGTTCCTCATCTAGACGGGATTCTCCCAAATGGAAACTTCGAGATAACCCCTCTCAAATCAAACATGAAGGGTCGACAAATAATCGGGGCTAACTCTCTTCCTCATTGGGAAATCGCCGGGCACGTGGAGCTAGTCTCCGGTGGACCTCAGCCTGGAGGATTCTATTTCCCCGTTCCACGTGGAGTCCACGCGGTTAGACTCGGAAACTTGGGCACCATCTCTCAGAACGTGAGGGTGAAGAGTGGTTTGGTCTACTCTCTAACGTTCGGAGCTACGAGGACTTGTGCTCAGGATGAGAACATCAAAGTCTCTGTGCCTGGTCAGGCCAATGAGCTTCCGCTCCAGACCGTCTTTAGCTCCGACGGTGGAGACACTTACGCTTGGGCTTTCAAGGCAACTTCTGATGTGGTTAAGGTCACTTTCCATAACCCTGGTGTTCAAGAAGACCGCACGTGTGGACCTCTCTTAGATGTTGTCGCAATCAAGGAGATTCTTCCTCTCCGGTATACCAGAGGAAACTTGGTGAAAAATGGAGGATTCGAGATCGGTCCACATGTTTTCGCTAATTTCTCAACCGGAATCTTGATTCCAGCAAGAATCCAAGACTTCATCTCTCCTCTTCCGGGATGGATCGTCGAATCCCTTAAACCAGTGAAGTATATCGATAGACGTCATTTCAAAGTTCCTTATGGACAAGGGGCCGTCGAGCTAGTTGCCGGAAGAGAAAGCGCAATAGCTCAGATCATCCGAACCATCGCTGGTAAAGCCTATATGCTCTCATTCGCGGTTGGTGATGCACAAAACGGTTGCCACGGGTCGATGATGGTGGAAGCGTTCGCAGGAAGAGAACCGTTTAAGCTTTCTTTTATGTCAGAAGGTAAAGGAGCGTTCAAAACAGGGCATTTTAGGTTTGTTGCTGATTCGGATCGAACGAGGCTAACGTTTTATAGTGCGTTTTATCATACAAAGCTTCATGACTTCGGCCATCTTTGTGGGCCTGTTCTTGATAGCGTTGTTGTTACCCTGGCCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

370

Amino Acids

40.37

Weight (kDa)

9.22

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 32 - 188 5.4e-62 Protein of unknown function (DUF642)
DUF642 PF04862 200 - 366 1e-12 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41800 AT2G41810
fragaria_vesca FvH4_6g23670
malus_domestica MD14G1071300.v1.1
prunus_persica Prupe.7G061700_v2.0.a1
pyrus_communis pycom14g06080
rosa_chinensis RchiOBHm_Chr3g0482101
rosa_laevigata RLG00000023374
rosa_multiflora Rmu_co8504877.1_g000001 Rmu_sc0000192.1_g000028 Rmu_sc0001738.1_g000034
rosa_roxburghii Rroxscaffold_6G00399700 Rroxscaffold_6G00400070
rosa_rugosa Rorug03G0194800
rosa_samantha Rh3AG246000 Rh3BG281100 Rh3CG277200 Rh3DG273500
rosa_wichuraiana Rw3G022000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 290
AccBSI CCGCTC 1 cut(s) 418
AccI GTMKAC 3 cut(s) 151, 330, 584
AccII CGCG 2 cut(s) 269, 863
AciI CCGC 4 cut(s) 269, 416, 526, 863
AclI AACGTT 2 cut(s) 341, 1019
AclWI GGATC 2 cut(s) 716, 1011
AcoI YGGCCR 1 cut(s) 1060
AcvI CACGTG 3 cut(s) 202, 257, 531
AcyI GRCGYC 1 cut(s) 748
AfiI CCNNNNNNNGG 2 cut(s) 230, 701
AflIII ACRYGT 2 cut(s) 530, 631
AgsI TTSAA 5 cut(s) 68, 469, 518, 757, 970
AjiI CACGTC 1 cut(s) 74
AjnI CCWGG 4 cut(s) 229, 394, 508, 1101
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 8 cut(s) 208, 350, 412, 435, 787, 815, 937, 1048
AluI AGCT 8 cut(s) 208, 350, 412, 435, 787, 815, 937, 1048
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 4 cut(s) 9, 217, 391, 441
AlwI GGATC 2 cut(s) 716, 1011
AoxI GGCC 5 cut(s) 402, 777, 1060, 1073, 1104
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 6 cut(s) 221, 536, 626, 777, 1073, 1105
AsuC2I CCSGG 2 cut(s) 196, 702
AsuHPI GGTGA 3 cut(s) 325, 613, 881
AvaII GGWCC 3 cut(s) 221, 536, 626
BaeGI GKGCMC 2 cut(s) 201, 293
BanI GGYRCC 1 cut(s) 290
BbrPI CACGTG 3 cut(s) 202, 257, 531
BbsI GAAGAC 2 cut(s) 56, 528
Bbv12I GWGCWC 1 cut(s) 367
BbvCI CCTCAGC 1 cut(s) 225
BccI CCATC 5 cut(s) 302, 699, 839, 895, 1071
BceAI ACGGC 1 cut(s) 764
BcgI CGANNNNNNTGC 2 cut(s) 773, 807
BciT130I CCWGG 4 cut(s) 231, 396, 510, 1103
BcnI CCSGG 2 cut(s) 196, 702
BcoDI GTCTC 4 cut(s) 9, 217, 391, 441
BfaI CTAG 3 cut(s) 89, 209, 788
Bme1390I CCNGG 6 cut(s) 196, 231, 396, 510, 702, 1103
Bme18I GGWCC 3 cut(s) 221, 536, 626
BmgBI CACGTC 1 cut(s) 74
BmgT120I GGNCC 6 cut(s) 221, 536, 626, 777, 1073, 1105
BmiI GGNNCC 2 cut(s) 292, 778
BmrFI CCNGG 6 cut(s) 196, 231, 396, 510, 702, 1103
BmsI GCATC 1 cut(s) 862
BpiI GAAGAC 2 cut(s) 56, 528
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BpmI CTGGAG 2 cut(s) 252, 404
Bpu10I CCTNAGC 2 cut(s) 225, 366
BpuMI CCSGG 2 cut(s) 196, 702
Bsa29I ATCGAT 1 cut(s) 741
BsaAI YACGTR 3 cut(s) 202, 257, 531
BsaBI GATNNNNATC 1 cut(s) 1002
BsaHI GRCGYC 1 cut(s) 748
BsaJI CCNNGG 4 cut(s) 49, 508, 889, 1101
BsaWI WCCGGW 3 cut(s) 215, 579, 653
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 701
Bse1I ACTGG 1 cut(s) 728
Bse8I GATNNNNATC 1 cut(s) 1002
BseBI CCWGG 4 cut(s) 231, 396, 510, 1103
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 4 cut(s) 49, 508, 889, 1101
BseGI GGATG 3 cut(s) 376, 710, 822
BseJI GATNNNNATC 1 cut(s) 1002
BseLI CCNNNNNNNGG 2 cut(s) 230, 701
BseMII CTCAG 4 cut(s) 239, 314, 380, 830
BseNI ACTGG 1 cut(s) 728
BseRI GAGGAG 2 cut(s) 23, 684
BseSI GKGCMC 2 cut(s) 201, 293
Bsh1236I CGCG 2 cut(s) 269, 863
BshFI GGCC 5 cut(s) 404, 779, 1062, 1075, 1106
BshNI GGYRCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 741
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 6 cut(s) 195, 216, 580, 654, 701, 795
BslI CCNNNNNNNGG 2 cut(s) 230, 701
BsmAI GTCTC 4 cut(s) 9, 217, 391, 441
BsnI GGCC 5 cut(s) 404, 779, 1062, 1075, 1106
Bsp1286I GDGCHC 3 cut(s) 201, 293, 367
Bsp143I GATC 4 cut(s) 621, 708, 819, 1003
Bsp19I CCATGG 1 cut(s) 49
BspACI CCGC 4 cut(s) 269, 416, 526, 863
BspANI GGCC 5 cut(s) 404, 779, 1062, 1075, 1106
BspCNI CTCAG 4 cut(s) 238, 313, 379, 829
BspDI ATCGAT 1 cut(s) 741
BspFNI CGCG 2 cut(s) 269, 863
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 2 cut(s) 292, 778
BspPI GGATC 2 cut(s) 716, 1011
BspT107I GGYRCC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 418
BsrI ACTGG 1 cut(s) 728
BssECI CCNNGG 4 cut(s) 49, 508, 889, 1101
BssMI GATC 4 cut(s) 621, 708, 819, 1003
BssNAI GTATAC 1 cut(s) 585
BssNI GRCGYC 1 cut(s) 748
BssT1I CCWWGG 1 cut(s) 49
Bst1107I GTATAC 1 cut(s) 585
Bst2UI CCWGG 4 cut(s) 231, 396, 510, 1103
Bst4CI ACNGT 5 cut(s) 62, 427, 443, 884, 930
Bst6I CTCTTC 5 cut(s) 180, 311, 702, 793, 916
BstACI GRCGYC 1 cut(s) 748
BstBAI YACGTR 3 cut(s) 202, 257, 531
BstDEI CTNAG 6 cut(s) 20, 225, 300, 366, 544, 816
BstDSI CCRYGG 2 cut(s) 49, 889
BstF5I GGATG 3 cut(s) 376, 710, 822
BstFNI CGCG 2 cut(s) 269, 863
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 4 cut(s) 624, 711, 822, 1006
BstMAI GTCTC 4 cut(s) 9, 217, 391, 441
BstMBI GATC 4 cut(s) 621, 708, 819, 1003
BstMWI GCNNNNNNNGC 3 cut(s) 205, 470, 842
BstNI CCWGG 4 cut(s) 231, 396, 510, 1103
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 6 cut(s) 194, 229, 394, 508, 700, 1101
BstSLI GKGCMC 2 cut(s) 201, 293
BstUI CGCG 2 cut(s) 269, 863
BstV2I GAAGAC 2 cut(s) 56, 528
BstXI CCANNNNNNTGG 2 cut(s) 509, 1070
BstZ17I GTATAC 1 cut(s) 585
Bsu15I ATCGAT 1 cut(s) 741
BsuRI GGCC 5 cut(s) 404, 779, 1062, 1075, 1106
BsuTUI ATCGAT 1 cut(s) 741
BtgI CCRYGG 2 cut(s) 49, 889
BtgZI GCGATG 1 cut(s) 817
BtrI CACGTC 1 cut(s) 74
BtsCI GGATG 3 cut(s) 376, 710, 822
BtsIMutI CAGTG 1 cut(s) 735
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 1 cut(s) 809
Cfr13I GGNCC 6 cut(s) 221, 536, 626, 777, 1073, 1105
ClaI ATCGAT 1 cut(s) 741
CviAII CATG 4 cut(s) 50, 142, 632, 1052
DdeI CTNAG 6 cut(s) 20, 225, 300, 366, 544, 816
DpnI GATC 4 cut(s) 623, 710, 821, 1005
DpnII GATC 4 cut(s) 621, 708, 819, 1003
EaeI YGGCCR 1 cut(s) 1060
Eam1104I CTCTTC 5 cut(s) 180, 311, 702, 793, 916
EarI CTCTTC 5 cut(s) 180, 311, 702, 793, 916
Eco130I CCWWGG 1 cut(s) 49
Eco47I GGWCC 3 cut(s) 221, 536, 626
Eco72I CACGTG 3 cut(s) 202, 257, 531
EcoRII CCWGG 4 cut(s) 229, 394, 508, 1101
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 4 cut(s) 53, 145, 635, 1055
FatI CATG 4 cut(s) 49, 141, 631, 1051
FblI GTMKAC 3 cut(s) 151, 330, 584
FokI GGATG 3 cut(s) 383, 717, 809
FspBI CTAG 3 cut(s) 89, 209, 788
GlaI GCGC 1 cut(s) 808
GsuI CTGGAG 2 cut(s) 252, 404
HaeIII GGCC 5 cut(s) 404, 779, 1062, 1075, 1106
HapII CCGG 6 cut(s) 195, 216, 580, 654, 701, 795
HhaI GCGC 1 cut(s) 809
Hin1I GRCGYC 1 cut(s) 748
Hin1II CATG 4 cut(s) 53, 145, 635, 1055
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HindIII AAGCTT 2 cut(s) 935, 1046
HpaII CCGG 6 cut(s) 195, 216, 580, 654, 701, 795
HphI GGTGA 3 cut(s) 325, 613, 881
Hpy166II GTNNAC 7 cut(s) 152, 221, 265, 331, 536, 585, 629
Hpy188I TCNGA 9 cut(s) 281, 303, 347, 439, 481, 819, 827, 952, 1003
Hpy188III TCNNGA 9 cut(s) 89, 118, 368, 421, 518, 619, 661, 1052, 1082
Hpy8I GTNNAC 7 cut(s) 152, 221, 265, 331, 536, 585, 629
Hpy99I CGWCG 4 cut(s) 78, 443, 716, 785
HpyAV CCTTC 2 cut(s) 139, 947
HpyCH4III ACNGT 5 cut(s) 62, 427, 443, 884, 930
HpyCH4IV ACGT 8 cut(s) 73, 201, 256, 306, 341, 530, 748, 1019
HpyCH4V TGCA 1 cut(s) 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 470, 842
HpyF3I CTNAG 6 cut(s) 20, 225, 300, 366, 544, 816
HpySE526I ACGT 8 cut(s) 73, 201, 256, 306, 341, 530, 748, 1019
Hsp92I GRCGYC 1 cut(s) 748
Hsp92II CATG 4 cut(s) 53, 145, 635, 1055
HspAI GCGC 1 cut(s) 807
Kzo9I GATC 4 cut(s) 621, 708, 819, 1003
LmnI GCTCC 5 cut(s) 205, 347, 423, 440, 962
LweI GCATC 1 cut(s) 862
MaeI CTAG 3 cut(s) 89, 209, 788
MaeII ACGT 8 cut(s) 73, 201, 256, 306, 341, 530, 748, 1019
MaeIII GTNAC 2 cut(s) 493, 1096
MalI GATC 4 cut(s) 623, 710, 821, 1005
MbiI CCGCTC 1 cut(s) 418
MboI GATC 4 cut(s) 621, 708, 819, 1003
MboII GAAGA 8 cut(s) 56, 167, 328, 533, 563, 689, 810, 933
MhlI GDGCHC 3 cut(s) 201, 293, 367
MluCI AATT 1 cut(s) 643
MlyI GAGTC 2 cut(s) 270, 270
MmeI TCCRAC 1 cut(s) 462
MseI TTAA 4 cut(s) 489, 723, 933, 1111
MslI CAYNNNNRTG 1 cut(s) 1068
MspI CCGG 6 cut(s) 195, 216, 580, 654, 701, 795
MspR9I CCNGG 6 cut(s) 196, 231, 396, 510, 702, 1103
MvaI CCWGG 4 cut(s) 231, 396, 510, 1103
MvnI CGCG 2 cut(s) 269, 863
MwoI GCNNNNNNNGC 3 cut(s) 205, 470, 842
NciI CCSGG 2 cut(s) 196, 702
NcoI CCATGG 1 cut(s) 49
NdeII GATC 4 cut(s) 621, 708, 819, 1003
NlaIII CATG 4 cut(s) 53, 145, 635, 1055
NlaIV GGNNCC 2 cut(s) 292, 778
NmuCI GTSAC 1 cut(s) 493
NspI RCATGY 1 cut(s) 635
PagI TCATGA 1 cut(s) 1051
PciI ACATGT 1 cut(s) 631
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 1007, 1016
PfeI GAWTC 9 cut(s) 97, 237, 568, 615, 657, 664, 675, 716, 998
PfoI TCCNGGA 1 cut(s) 700
PleI GAGTC 2 cut(s) 269, 270
PmaCI CACGTG 3 cut(s) 202, 257, 531
PmlI CACGTG 3 cut(s) 202, 257, 531
PpsI GAGTC 2 cut(s) 269, 270
Ppu21I YACGTR 3 cut(s) 202, 257, 531
PscI ACATGT 1 cut(s) 631
Psp1406I AACGTT 2 cut(s) 341, 1019
Psp6I CCWGG 4 cut(s) 229, 394, 508, 1101
PspCI CACGTG 3 cut(s) 202, 257, 531
PspGI CCWGG 4 cut(s) 229, 394, 508, 1101
PspN4I GGNNCC 2 cut(s) 292, 778
PspPI GGNCC 6 cut(s) 221, 536, 626, 777, 1073, 1105
RseI CAYNNNNRTG 1 cut(s) 1068
SalI GTCGAC 1 cut(s) 150
SaqAI TTAA 4 cut(s) 489, 723, 933, 1111
Sau3AI GATC 4 cut(s) 621, 708, 819, 1003
Sau96I GGNCC 6 cut(s) 221, 536, 626, 777, 1073, 1105
SchI GAGTC 2 cut(s) 270, 270
ScrFI CCNGG 6 cut(s) 196, 231, 396, 510, 702, 1103
SduI GDGCHC 3 cut(s) 201, 293, 367
SfaNI GCATC 1 cut(s) 862
SinI GGWCC 3 cut(s) 221, 536, 626
SmiMI CAYNNNNRTG 1 cut(s) 1068
Sse9I AATT 1 cut(s) 643
SsiI CCGC 4 cut(s) 269, 416, 526, 863
SspMI CTAG 3 cut(s) 89, 209, 788
StyD4I CCNGG 6 cut(s) 194, 229, 394, 508, 700, 1101
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 5 cut(s) 62, 427, 443, 884, 930
TaiI ACGT 8 cut(s) 76, 204, 259, 309, 344, 533, 751, 1022
TaqI TCGA 9 cut(s) 76, 117, 151, 618, 714, 741, 783, 896, 1006
TaqII GACCGA 1 cut(s) 614
TasI AATT 1 cut(s) 643
TfiI GAWTC 9 cut(s) 97, 237, 568, 615, 657, 664, 675, 716, 998
Tru1I TTAA 4 cut(s) 489, 723, 933, 1111
Tru9I TTAA 4 cut(s) 489, 723, 933, 1111
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 3 cut(s) 158, 676, 1040
TspRI CASTG 1 cut(s) 735
VpaK11BI GGWCC 3 cut(s) 221, 536, 626
XbaI TCTAGA 1 cut(s) 88
XceI RCATGY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XmiI GTMKAC 3 cut(s) 151, 330, 584
XspI CTAG 3 cut(s) 89, 209, 788
ZraI GACGTC 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.