Rorug03G0194800

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011779
Physical Location & Seq
Forward (+)
17152792 .. 17155556
2765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0194800.1

Sequence Viewer

Length: 483 bp
ATGGCCATACGACGGGGAGTTAGCCAACAGCTGCCGACGGGTTCTGCCTTTCTTTACTCTGAATTTGTTCTAGTTTCCCAGTCTACCCCAGTAACAGAGGCATTTAATCTAGCTGACGATATTCTACGACAAGGGGTGTTCGTGATTCCCGGGCTGTCAAATGTCGACTTTGCTGATGTAAGGGCTATAATGGTGAATGCGGGTTCTTCGTTGATGGGGATAGGAACTGCAACTGGAGATAACTGTCTTTTCTTTTTTTTTCCTTCCTCTTTGGGAACACGGAAGACAAGAGCAAGAGTTGCTGCATTAAATGCCATTCAATCATCTTTATTAGATATTGGTATAATGAGGGCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACTCTATGAGGTAAATGCTGCAACAGAGGTTATATATGATCTTGTTGATCCAACAGCAAATTTAGTATTTGGAGCAGGTACAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

160

Amino Acids

16.89

Weight (kDa)

4.55

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FtsZ_C PF12327 71 - 157 2.5e-16 FtsZ family, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41800 AT2G41810
fragaria_vesca FvH4_6g23670
malus_domestica MD14G1071300.v1.1
prunus_persica Prupe.7G061700_v2.0.a1
pyrus_communis pycom14g06080
rosa_chinensis RchiOBHm_Chr3g0482101
rosa_laevigata RLG00000023374
rosa_multiflora Rmu_co8504877.1_g000001 Rmu_sc0000192.1_g000028 Rmu_sc0001738.1_g000034
rosa_roxburghii Rroxscaffold_6G00399700 Rroxscaffold_6G00400070
rosa_rugosa Rorug03G0194800
rosa_samantha Rh3AG246000 Rh3BG281100 Rh3CG277200 Rh3DG273500
rosa_wichuraiana Rw3G022000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 461
AccI GTMKAC 2 cut(s) 83, 165
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 62, 454
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 320
AluBI AGCT 2 cut(s) 31, 113
AluI AGCT 2 cut(s) 31, 113
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 31, 302, 413
ApoI RAATTY 2 cut(s) 62, 454
Asp700I GAANNNNTTC 1 cut(s) 66
AsuC2I CCSGG 2 cut(s) 150, 151
AsuHPI GGTGA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 149
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 3 cut(s) 18, 289, 400
BccI CCATC 1 cut(s) 208
BcnI CCSGG 2 cut(s) 150, 151
BfaI CTAG 2 cut(s) 71, 110
BfuAI ACCTGC 1 cut(s) 461
BisI GCNGC 3 cut(s) 32, 303, 414
BlsI GCNGC 3 cut(s) 33, 304, 415
Bme1390I CCNGG 2 cut(s) 150, 151
BmeT110I CYCGRG 1 cut(s) 149
BmrFI CCNGG 2 cut(s) 150, 151
BmrI ACTGGG 2 cut(s) 73, 83
BmuI ACTGGG 2 cut(s) 73, 83
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 255
BpuMI CCSGG 2 cut(s) 150, 151
BsaJI CCNNGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse1I ACTGG 5 cut(s) 79, 89, 238, 361, 382
BseDI CCNNGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 12
BseNI ACTGG 5 cut(s) 79, 89, 238, 361, 382
BseXI GCAGC 3 cut(s) 18, 289, 400
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 12
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 2 cut(s) 433, 442
BspACI CCGC 1 cut(s) 200
BspANI GGCC 1 cut(s) 5
BspMI ACCTGC 1 cut(s) 461
BspPI GGATC 1 cut(s) 437
BsrI ACTGG 5 cut(s) 79, 89, 238, 361, 382
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 2 cut(s) 433, 442
Bst4CI ACNGT 1 cut(s) 245
BstAPI GCANNNNNTGC 2 cut(s) 299, 311
BstKTI GATC 2 cut(s) 436, 445
BstMBI GATC 2 cut(s) 433, 442
BstMWI GCNNNNNNNGC 2 cut(s) 299, 311
BstSCI CCNGG 2 cut(s) 148, 149
BstV1I GCAGC 3 cut(s) 18, 289, 400
BstV2I GAAGAC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 5
BveI ACCTGC 1 cut(s) 461
Cfr9I CCCGGG 1 cut(s) 149
Csp6I GTAC 1 cut(s) 474
CviJI RGCY 7 cut(s) 5, 24, 31, 113, 154, 185, 353
CviKI_1 RGCY 7 cut(s) 5, 24, 31, 113, 154, 185, 353
CviQI GTAC 1 cut(s) 474
DpnI GATC 2 cut(s) 435, 444
DpnII GATC 2 cut(s) 433, 442
EaeI YGGCCR 1 cut(s) 3
Eco88I CYCGRG 1 cut(s) 149
FaiI YATR 8 cut(s) 8, 188, 344, 374, 402, 428, 430, 432
FauI CCCGC 1 cut(s) 193
FblI GTMKAC 2 cut(s) 83, 165
Fnu4HI GCNGC 3 cut(s) 32, 303, 414
Fsp4HI GCNGC 3 cut(s) 32, 303, 414
FspBI CTAG 2 cut(s) 71, 110
GluI GCNGC 3 cut(s) 32, 303, 414
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 150
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 1 cut(s) 145
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 84, 166
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 142, 367
Hpy8I GTNNAC 2 cut(s) 84, 166
Hpy99I CGWCG 2 cut(s) 15, 40
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 230, 305, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 311
Kzo9I GATC 2 cut(s) 433, 442
LmnI GCTCC 1 cut(s) 467
LpnPI CCDG 9 cut(s) 92, 102, 163, 219, 342, 352, 363, 456, 462
Lsp1109I GCAGC 3 cut(s) 18, 289, 400
MaeI CTAG 2 cut(s) 71, 110
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 435, 444
MboI GATC 2 cut(s) 433, 442
MboII GAAGA 2 cut(s) 198, 295
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 62, 360, 454
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 5 cut(s) 91, 277, 342, 397, 415
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 66
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 105, 308
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 150, 151
Mva1269I GAATGC 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 299, 311
NciI CCSGG 2 cut(s) 150, 151
NdeII GATC 2 cut(s) 433, 442
PctI GAATGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 3 cut(s) 33, 304, 415
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 105, 308
SatI GCNGC 3 cut(s) 32, 303, 414
Sau3AI GATC 2 cut(s) 433, 442
ScrFI CCNGG 2 cut(s) 150, 151
SetI ASST 5 cut(s) 33, 115, 408, 426, 475
SmaI CCCGGG 1 cut(s) 151
Sse9I AATT 3 cut(s) 62, 360, 454
SsiI CCGC 1 cut(s) 200
SspMI CTAG 2 cut(s) 71, 110
StyD4I CCNGG 2 cut(s) 148, 149
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 165
TasI AATT 3 cut(s) 62, 360, 454
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 105, 308
Tru9I TTAA 2 cut(s) 105, 308
TseI GCWGC 3 cut(s) 31, 302, 413
TspGWI ACGGA 1 cut(s) 295
TspMI CCCGGG 1 cut(s) 149
XapI RAATTY 2 cut(s) 62, 454
XmaI CCCGGG 1 cut(s) 149
XmiI GTMKAC 2 cut(s) 83, 165
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 2 cut(s) 71, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.