AT2G41810

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011779
Physical Location & Seq
Reverse (-)
17439263 .. 17441416
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41810.1

Sequence Viewer

Length: 1113 bp
ATGTCTCTCGTTCTCTCTCTTTGCTTGGTCTTCCTTTGTTCTCTTGTTCATGGTTCTCATAGCTTACCAGCACAACGGACTCCTCATCTTGATGGGCTTCTCCCAAATGGGAACTTTGAGCAAATTCCTAACAAATCAAACATGAGAAAGAGGCAAATAATTGGCAAATACTCTCTTCCACATTGGGAAATCTCCGGCCACGTAGAGCTAGTCTCTGGCGGTCCACAGCCCGGTGGTTTTTACTTCGCAGTGCCACGTGGAGTCCACGCAGCTAGGCTAGGGAACTTAGCATCAATATCTCAGTATGTGAAAGTGAAAAGCGGCTTGGTCTATTCTCTAACGTTTGGTGTCACGAGGACTTGTGCTCAAGACGAGAACATCAGAATCTCTGTGCCTGGTCAGACCAATGAGCTACCAATCCAAACATTGTTCAGTACCAACGGTGGTGATACGTACGCATGGGCTTTTAAGGCAACGTCTGACTTGGTTAAGGTCACTTTTTATAATCCTGGTGTTCAAGAAGACCCTACTTGTGGCCCAATCGTTGACGCTGTTGCCATTAAGGAGATTCTTCCTCTCCGGTATACCAAAGGGAACCTTGTGAAAAACGGCGGATTTGAGACCGGTCCACACGTATTCAGCAACTTCTCTACCGGAATTTTAATTCCGGCGAAGATACAAGACCTAATCTCACCGCTTCCGGGATGGATCGTCGAATCTCTAAAACCGGTTAAGTACATCGATAACCGCCACTTCAAGGTTCCCTCAGGTCTCGCAGCAATCGAGCTTGTTGCCGGAAGAGAAAGCGCAATCGCTCAGATCATCCGTACCGTCTCCGGTAAAAACTACATTCTCTCGTTTGTTGTGGGAGACGCACACAATGGTTGTCACGGATCGATGATGGTGGAGGCGTTTGCGGGAATATCGGCGTTTAAGGTTACATTCGAATCTAATGATAAAGGAGCGTTCAAAGTGGGGCGTTTCGCGTTTCGTGCCGATTCGAATCGCACAAGGATAACTTTCTATAGTGGGTTTTATCATACCAAGCTTCATGATTTTGGACATCTTTGTGGGCCTGTGCTTGATAATGTTAGTGTTTTTTTGGCCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

370

Amino Acids

40.26

Weight (kDa)

9.13

Isoelectric Point (pI)

26.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 32 - 188 3.2e-61 Protein of unknown function (DUF642)
DUF642 PF04862 200 - 366 2.5e-13 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41800 AT2G41810
fragaria_vesca FvH4_6g23670
malus_domestica MD14G1071300.v1.1
prunus_persica Prupe.7G061700_v2.0.a1
pyrus_communis pycom14g06080
rosa_chinensis RchiOBHm_Chr3g0482101
rosa_laevigata RLG00000023374
rosa_multiflora Rmu_co8504877.1_g000001 Rmu_sc0000192.1_g000028 Rmu_sc0001738.1_g000034
rosa_roxburghii Rroxscaffold_6G00399700 Rroxscaffold_6G00400070
rosa_rugosa Rorug03G0194800
rosa_samantha Rh3AG246000 Rh3BG281100 Rh3CG277200 Rh3DG273500
rosa_wichuraiana Rw3G022000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AccI GTMKAC 1 cut(s) 584
AccII CGCG 1 cut(s) 986
AciI CCGC 6 cut(s) 219, 321, 612, 695, 748, 917
AclI AACGTT 1 cut(s) 341
AclWI GGATC 2 cut(s) 716, 901
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 2 cut(s) 123, 657
AcvI CACGTG 1 cut(s) 257
AfaI GTAC 4 cut(s) 436, 455, 737, 829
AfiI CCNNNNNNNGG 4 cut(s) 230, 533, 701, 757
AflIII ACRYGT 1 cut(s) 631
AgeI ACCGGT 2 cut(s) 623, 727
AgsI TTSAA 3 cut(s) 518, 757, 970
AjnI CCWGG 2 cut(s) 394, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 6 cut(s) 63, 208, 272, 412, 787, 1048
AluI AGCT 6 cut(s) 63, 208, 272, 412, 787, 1048
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 6 cut(s) 9, 217, 614, 776, 838, 864
AlwI GGATC 2 cut(s) 716, 901
AoxI GGCC 4 cut(s) 196, 535, 1073, 1104
ApeKI GCWGC 2 cut(s) 269, 776
ApoI RAATTY 2 cut(s) 123, 657
AsiGI ACCGGT 2 cut(s) 623, 727
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 5 cut(s) 221, 536, 626, 1073, 1105
AsuC2I CCSGG 2 cut(s) 231, 702
AsuHPI GGTGA 2 cut(s) 458, 684
AsuII TTCGAA 2 cut(s) 945, 1001
AvaII GGWCC 2 cut(s) 221, 626
AxyI CCTNAGG 1 cut(s) 766
BauI CACGAG 1 cut(s) 352
BbrPI CACGTG 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 22, 528
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 2 cut(s) 281, 788
BccI CCATC 3 cut(s) 86, 699, 895
BceAI ACGGC 1 cut(s) 625
BcgI CGANNNNNNTGC 2 cut(s) 773, 807
BciT130I CCWGG 2 cut(s) 396, 510
BcnI CCSGG 2 cut(s) 231, 702
BcoDI GTCTC 6 cut(s) 9, 217, 614, 776, 838, 864
BfaI CTAG 3 cut(s) 209, 273, 278
BfmI CTRYAG 1 cut(s) 1024
BisI GCNGC 3 cut(s) 270, 322, 777
BlsI GCNGC 3 cut(s) 271, 323, 778
Bme1390I CCNGG 4 cut(s) 231, 396, 510, 702
Bme18I GGWCC 2 cut(s) 221, 626
BmgT120I GGNCC 5 cut(s) 221, 536, 626, 1073, 1105
BmiI GGNNCC 2 cut(s) 596, 762
BmrFI CCNGG 4 cut(s) 231, 396, 510, 702
BmsI GCATC 1 cut(s) 299
BpiI GAAGAC 2 cut(s) 22, 528
BplI GAGNNNNNCTC 2 cut(s) 197, 229
Bpu14I TTCGAA 2 cut(s) 945, 1001
BpuEI CTTGAG 1 cut(s) 351
BpuMI CCSGG 2 cut(s) 231, 702
Bsa29I ATCGAT 2 cut(s) 741, 896
BsaAI YACGTR 4 cut(s) 202, 257, 453, 634
BsaBI GATNNNNATC 1 cut(s) 1002
BsaI GGTCTC 2 cut(s) 614, 776
BsaWI WCCGGW 5 cut(s) 579, 623, 653, 727, 836
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 533, 701, 757
Bse118I RCCGGY 2 cut(s) 623, 727
Bse21I CCTNAGG 1 cut(s) 766
Bse8I GATNNNNATC 1 cut(s) 1002
BseBI CCWGG 2 cut(s) 396, 510
BseCI ATCGAT 2 cut(s) 741, 896
BseGI GGATG 2 cut(s) 710, 822
BseJI GATNNNNATC 1 cut(s) 1002
BseLI CCNNNNNNNGG 4 cut(s) 230, 533, 701, 757
BseMII CTCAG 3 cut(s) 314, 780, 830
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 281, 788
Bsh1236I CGCG 1 cut(s) 986
BshFI GGCC 4 cut(s) 198, 537, 1075, 1106
BshTI ACCGGT 2 cut(s) 623, 727
BshVI ATCGAT 2 cut(s) 741, 896
BsiHKAI GWGCWC 1 cut(s) 367
BsiWI CGTACG 1 cut(s) 453
BslI CCNNNNNNNGG 4 cut(s) 230, 533, 701, 757
BsmAI GTCTC 6 cut(s) 9, 217, 614, 776, 838, 864
BsmBI CGTCTC 2 cut(s) 838, 864
BsnI GGCC 4 cut(s) 198, 537, 1075, 1106
Bso31I GGTCTC 2 cut(s) 614, 776
Bsp119I TTCGAA 2 cut(s) 945, 1001
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 3 cut(s) 708, 819, 893
BspACI CCGC 6 cut(s) 219, 321, 612, 695, 748, 917
BspANI GGCC 4 cut(s) 198, 537, 1075, 1106
BspCNI CTCAG 3 cut(s) 313, 779, 829
BspDI ATCGAT 2 cut(s) 741, 896
BspFNI CGCG 1 cut(s) 986
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 2 cut(s) 596, 762
BspPI GGATC 2 cut(s) 716, 901
BspT104I TTCGAA 2 cut(s) 945, 1001
BspTNI GGTCTC 2 cut(s) 614, 776
BsrFI RCCGGY 2 cut(s) 623, 727
BssAI RCCGGY 2 cut(s) 623, 727
BssMI GATC 3 cut(s) 708, 819, 893
BssNAI GTATAC 1 cut(s) 585
BssSI CACGAG 1 cut(s) 352
Bst1107I GTATAC 1 cut(s) 585
Bst2BI CACGAG 1 cut(s) 352
Bst2UI CCWGG 2 cut(s) 396, 510
Bst4CI ACNGT 2 cut(s) 443, 832
Bst6I CTCTTC 2 cut(s) 180, 793
BstBAI YACGTR 4 cut(s) 202, 257, 453, 634
BstBI TTCGAA 2 cut(s) 945, 1001
BstDEI CTNAG 4 cut(s) 286, 300, 766, 816
BstF5I GGATG 2 cut(s) 710, 822
BstFNI CGCG 1 cut(s) 986
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 3 cut(s) 711, 822, 896
BstMAI GTCTC 6 cut(s) 9, 217, 614, 776, 838, 864
BstMBI GATC 3 cut(s) 708, 819, 893
BstMWI GCNNNNNNNGC 2 cut(s) 470, 992
BstNI CCWGG 2 cut(s) 396, 510
BstSCI CCNGG 4 cut(s) 229, 394, 508, 700
BstSFI CTRYAG 1 cut(s) 1024
BstSNI TACGTA 1 cut(s) 453
BstUI CGCG 1 cut(s) 986
BstV1I GCAGC 2 cut(s) 281, 788
BstV2I GAAGAC 2 cut(s) 22, 528
BstZ17I GTATAC 1 cut(s) 585
Bsu15I ATCGAT 2 cut(s) 741, 896
Bsu36I CCTNAGG 1 cut(s) 766
BsuRI GGCC 4 cut(s) 198, 537, 1075, 1106
BsuTUI ATCGAT 2 cut(s) 741, 896
BtsCI GGATG 2 cut(s) 710, 822
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 1 cut(s) 809
Cfr10I RCCGGY 2 cut(s) 623, 727
Cfr13I GGNCC 5 cut(s) 221, 536, 626, 1073, 1105
ClaI ATCGAT 2 cut(s) 741, 896
CseI GACGC 2 cut(s) 557, 881
Csp6I GTAC 4 cut(s) 435, 454, 736, 828
CspAI ACCGGT 2 cut(s) 623, 727
CviAII CATG 4 cut(s) 50, 142, 459, 1052
CviQI GTAC 4 cut(s) 435, 454, 736, 828
DdeI CTNAG 4 cut(s) 286, 300, 766, 816
DpnI GATC 3 cut(s) 710, 821, 895
DpnII GATC 3 cut(s) 708, 819, 893
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 180, 793
EarI CTCTTC 2 cut(s) 180, 793
EciI GGCGGA 1 cut(s) 627
Eco105I TACGTA 1 cut(s) 453
Eco31I GGTCTC 2 cut(s) 614, 776
Eco47I GGWCC 2 cut(s) 221, 626
Eco72I CACGTG 1 cut(s) 257
Eco81I CCTNAGG 1 cut(s) 766
EcoRII CCWGG 2 cut(s) 394, 508
Esp3I CGTCTC 2 cut(s) 838, 864
FaeI CATG 4 cut(s) 53, 145, 462, 1055
FalI AAGNNNNNCTT 4 cut(s) 582, 614, 1003, 1035
FatI CATG 4 cut(s) 49, 141, 458, 1051
FauI CCCGC 1 cut(s) 910
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 3 cut(s) 270, 322, 777
FokI GGATG 2 cut(s) 717, 809
Fsp4HI GCNGC 3 cut(s) 270, 322, 777
FspBI CTAG 3 cut(s) 209, 273, 278
GlaI GCGC 1 cut(s) 808
GluI GCNGC 3 cut(s) 270, 322, 777
HaeIII GGCC 4 cut(s) 198, 537, 1075, 1106
HgaI GACGC 2 cut(s) 557, 881
HhaI GCGC 1 cut(s) 809
Hin1II CATG 4 cut(s) 53, 145, 462, 1055
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 1046
HinfI GANTC 8 cut(s) 79, 261, 384, 568, 716, 947, 998, 1003
HphI GGTGA 2 cut(s) 458, 684
Hpy166II GTNNAC 5 cut(s) 224, 265, 547, 585, 629
Hpy188I TCNGA 4 cut(s) 383, 402, 481, 819
Hpy188III TCNNGA 5 cut(s) 89, 352, 368, 518, 1052
Hpy8I GTNNAC 5 cut(s) 224, 265, 547, 585, 629
Hpy99I CGWCG 1 cut(s) 716
HpyCH4III ACNGT 2 cut(s) 443, 832
HpyCH4IV ACGT 6 cut(s) 201, 256, 341, 452, 476, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 992
HpyF3I CTNAG 4 cut(s) 286, 300, 766, 816
HpySE526I ACGT 6 cut(s) 201, 256, 341, 452, 476, 633
Hsp92II CATG 4 cut(s) 53, 145, 462, 1055
HspAI GCGC 1 cut(s) 807
Kzo9I GATC 3 cut(s) 708, 819, 893
LmnI GCTCC 1 cut(s) 962
Lsp1109I GCAGC 2 cut(s) 281, 788
LweI GCATC 1 cut(s) 299
MaeI CTAG 3 cut(s) 209, 273, 278
MaeII ACGT 6 cut(s) 201, 256, 341, 452, 476, 633
MaeIII GTNAC 4 cut(s) 349, 493, 887, 937
MalI GATC 3 cut(s) 710, 821, 895
MboI GATC 3 cut(s) 708, 819, 893
MboII GAAGA 6 cut(s) 22, 167, 533, 563, 685, 810
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 4 cut(s) 123, 159, 657, 663
MlyI GAGTC 2 cut(s) 73, 270
MnlI CCTC 6 cut(s) 93, 144, 348, 585, 775, 901
MseI TTAA 7 cut(s) 468, 489, 561, 662, 732, 933, 1111
MslI CAYNNNNRTG 2 cut(s) 90, 1068
MspR9I CCNGG 4 cut(s) 231, 396, 510, 702
MvaI CCWGG 2 cut(s) 396, 510
MvnI CGCG 1 cut(s) 986
MwoI GCNNNNNNNGC 2 cut(s) 470, 992
NciI CCSGG 2 cut(s) 231, 702
NdeII GATC 3 cut(s) 708, 819, 893
NlaIII CATG 4 cut(s) 53, 145, 462, 1055
NlaIV GGNNCC 2 cut(s) 596, 762
NmuCI GTSAC 3 cut(s) 349, 493, 887
NspV TTCGAA 2 cut(s) 945, 1001
PagI TCATGA 1 cut(s) 1051
PcsI WCGNNNNNNNCGW 1 cut(s) 780
PfeI GAWTC 6 cut(s) 384, 568, 716, 947, 998, 1003
Pfl23II CGTACG 1 cut(s) 453
PfoI TCCNGGA 1 cut(s) 700
PinAI ACCGGT 2 cut(s) 623, 727
PkrI GCNGC 3 cut(s) 271, 323, 778
PleI GAGTC 2 cut(s) 73, 269
PmaCI CACGTG 1 cut(s) 257
PmlI CACGTG 1 cut(s) 257
PpsI GAGTC 2 cut(s) 73, 269
Ppu21I YACGTR 4 cut(s) 202, 257, 453, 634
PsiI TTATAA 1 cut(s) 504
Psp1406I AACGTT 1 cut(s) 341
Psp6I CCWGG 2 cut(s) 394, 508
PspCI CACGTG 1 cut(s) 257
PspGI CCWGG 2 cut(s) 394, 508
PspLI CGTACG 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 596, 762
PspPI GGNCC 5 cut(s) 221, 536, 626, 1073, 1105
RsaI GTAC 4 cut(s) 436, 455, 737, 829
RsaNI GTAC 4 cut(s) 435, 454, 736, 828
RseI CAYNNNNRTG 2 cut(s) 90, 1068
SaqAI TTAA 7 cut(s) 468, 489, 561, 662, 732, 933, 1111
SatI GCNGC 3 cut(s) 270, 322, 777
Sau3AI GATC 3 cut(s) 708, 819, 893
Sau96I GGNCC 5 cut(s) 221, 536, 626, 1073, 1105
SchI GAGTC 2 cut(s) 73, 270
ScrFI CCNGG 4 cut(s) 231, 396, 510, 702
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 1 cut(s) 299
SfcI CTRYAG 1 cut(s) 1024
SfuI TTCGAA 2 cut(s) 945, 1001
SinI GGWCC 2 cut(s) 221, 626
SmiMI CAYNNNNRTG 2 cut(s) 90, 1068
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
SnaBI TACGTA 1 cut(s) 453
Sse9I AATT 4 cut(s) 123, 159, 657, 663
SsiI CCGC 6 cut(s) 219, 321, 612, 695, 748, 917
SspMI CTAG 3 cut(s) 209, 273, 278
StyD4I CCNGG 4 cut(s) 229, 394, 508, 700
TaaI ACNGT 2 cut(s) 443, 832
TaiI ACGT 6 cut(s) 204, 259, 344, 455, 479, 636
TaqI TCGA 6 cut(s) 714, 741, 783, 896, 945, 1001
TasI AATT 4 cut(s) 123, 159, 657, 663
TatI WGTACW 1 cut(s) 735
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 6 cut(s) 384, 568, 716, 947, 998, 1003
Tru1I TTAA 7 cut(s) 468, 489, 561, 662, 732, 933, 1111
Tru9I TTAA 7 cut(s) 468, 489, 561, 662, 732, 933, 1111
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 3 cut(s) 349, 493, 887
TseI GCWGC 2 cut(s) 269, 776
Tsp45I GTSAC 3 cut(s) 349, 493, 887
TspDTI ATGAA 2 cut(s) 38, 1040
TspGWI ACGGA 3 cut(s) 91, 815, 906
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 2 cut(s) 221, 626
XapI RAATTY 2 cut(s) 123, 657
XmiI GTMKAC 1 cut(s) 584
XspI CTAG 3 cut(s) 209, 273, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.