FvH4_6g23670

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011779
Physical Location & Seq
Forward (+)
17753941 .. 17756006
2066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23670.t1

Sequence Viewer

Length: 909 bp
ATGGCTTCTTTCGTAGTCTTTCTTCGCTATCTGGTCTCTATCACTCTCTGCATTGCCTATGCTTCTGCATATGCTACTCAACACCTTGATGGTGAACTACCAAATGGACACTTCGAAGAATCACCCCGTTCCTCAAACCTTAAGAAAACAGTCATCCTCGGCAAACACTCACTCCCTAAGTGGGAGATCGACGGCCTGGTGGAGTACATCTCAGGTGGGCCGCAGCCTGGTGGGTTCTACTTTCCGGTGGCGCGTGGCGTCCACGCTCTGAGGCTCGGCAACGAGGCCTCCATTTCTCAGAACGTGAACGTTAACCCGGGTTCAGTTTACTCCCTCACTTTTAGCACCACAAGGACTTGTGCTCAAGACGAAGTGCTCAGGGTCTCGGTGCCAGGTCAGTCTGCAGAGCTTTCCGTTCAGACTTTGTACAGCAACAATGGGGGTGACACTTATGCATGGGCCTTTAAGGCAACTTCTAAGGTTGTTAGGGTTACGTTCCACAACCCTGGGATTCAAGAGGACCCAGCCTGCGGCCCTCTGTTGGATGCTATTGCAATCAAGGAGATCATACTGCCTCAGAAGTATATAAGAGGTAACCTAGTCAAAAACGGTGGATTTGAAAACGGTCCTCATGTGTTCAAGAATTTTTCAACTGGAGTGCTCCTCCCTCCACAGTTACTGGACCAAATCTCACCCCTGCCAGGATGGATCATTGAATCCCTAAAACCTGTGAAGTACATTGACAGGAAGCACTTCTCAGTACCAACCGGATTCGCAGCAATCGAATTATCGAATTGGTCGCAGGAAGGGAGACTGCCATTGCTCAAATTATTAGAACAATCCCAAACAAATCCTACAACCTTATGTTCACCATCGGAGATGCAAAGAATGGCTGTCATGGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

303

Amino Acids

33.13

Weight (kDa)

7.7

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 32 - 187 8.5e-65 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41800 AT2G41810
fragaria_vesca FvH4_6g23670
malus_domestica MD14G1071300.v1.1
prunus_persica Prupe.7G061700_v2.0.a1
pyrus_communis pycom14g06080
rosa_chinensis RchiOBHm_Chr3g0482101
rosa_laevigata RLG00000023374
rosa_multiflora Rmu_co8504877.1_g000001 Rmu_sc0000192.1_g000028 Rmu_sc0001738.1_g000034
rosa_roxburghii Rroxscaffold_6G00399700 Rroxscaffold_6G00400070
rosa_rugosa Rorug03G0194800
rosa_samantha Rh3AG246000 Rh3BG281100 Rh3CG277200 Rh3DG273500
rosa_wichuraiana Rw3G022000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AccII CGCG 1 cut(s) 253
AciI CCGC 2 cut(s) 221, 531
AclI AACGTT 1 cut(s) 309
AclWI GGATC 1 cut(s) 716
AcsI RAATTY 1 cut(s) 643
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 4 cut(s) 206, 428, 737, 762
AfiI CCNNNNNNNGG 5 cut(s) 181, 227, 530, 541, 701
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 5 cut(s) 515, 620, 640, 651, 716
AjnI CCWGG 5 cut(s) 195, 226, 391, 505, 700
AluBI AGCT 1 cut(s) 409
AluI AGCT 1 cut(s) 409
Alw21I GWGCWC 3 cut(s) 364, 378, 663
Alw26I GTCTC 3 cut(s) 40, 388, 805
AlwI GGATC 1 cut(s) 716
AlwNI CAGNNNCTG 1 cut(s) 679
Ama87I CYCGRG 1 cut(s) 316
AoxI GGCC 5 cut(s) 193, 218, 285, 459, 532
ApeKI GCWGC 2 cut(s) 223, 776
ApoI RAATTY 1 cut(s) 643
Asp700I GAANNNNTTC 1 cut(s) 752
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 6 cut(s) 218, 459, 520, 533, 626, 682
AsuC2I CCSGG 2 cut(s) 317, 318
AsuHPI GGTGA 5 cut(s) 104, 114, 455, 684, 861
AsuII TTCGAA 1 cut(s) 114
AvaI CYCGRG 1 cut(s) 316
AvaII GGWCC 3 cut(s) 520, 626, 682
BanI GGYRCC 1 cut(s) 388
BarI GAAGNNNNNNTAC 1 cut(s) 38
Bbv12I GWGCWC 3 cut(s) 364, 378, 663
BbvI GCAGC 2 cut(s) 235, 788
BccI CCATC 3 cut(s) 83, 699, 880
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 5 cut(s) 197, 228, 393, 507, 702
BcnI CCSGG 2 cut(s) 317, 318
BcoDI GTCTC 3 cut(s) 40, 388, 805
BfaI CTAG 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 402
BfrI CTTAAG 1 cut(s) 140
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 4 cut(s) 221, 224, 532, 777
BlsI GCNGC 4 cut(s) 222, 225, 533, 778
Bme1390I CCNGG 7 cut(s) 197, 228, 317, 318, 393, 507, 702
Bme18I GGWCC 3 cut(s) 520, 626, 682
BmeT110I CYCGRG 1 cut(s) 316
BmgT120I GGNCC 6 cut(s) 218, 459, 520, 533, 626, 682
BmiI GGNNCC 2 cut(s) 390, 522
BmrFI CCNGG 7 cut(s) 197, 228, 317, 318, 393, 507, 702
BmsI GCATC 2 cut(s) 535, 870
BplI GAGNNNNNCTC 4 cut(s) 194, 226, 648, 680
BpmI CTGGAG 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 348
BpuMI CCSGG 2 cut(s) 317, 318
Bsa29I ATCGAT 1 cut(s) 904
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 2 cut(s) 40, 388
BsaJI CCNNGG 4 cut(s) 157, 316, 505, 506
BsaWI WCCGGW 2 cut(s) 244, 767
BsaXI ACNNNNNCTCC 4 cut(s) 156, 186, 272, 302
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 227, 530, 541, 701
Bse1I ACTGG 2 cut(s) 658, 684
Bse3DI GCAATG 2 cut(s) 51, 818
BseBI CCWGG 5 cut(s) 197, 228, 393, 507, 702
BseCI ATCGAT 1 cut(s) 904
BseDI CCNNGG 4 cut(s) 157, 316, 505, 506
BseGI GGATG 3 cut(s) 153, 550, 710
BseLI CCNNNNNNNGG 5 cut(s) 181, 227, 530, 541, 701
BseMI GCAATG 2 cut(s) 51, 818
BseMII CTCAG 6 cut(s) 225, 260, 311, 391, 590, 771
BseNI ACTGG 2 cut(s) 658, 684
BseRI GAGGAG 1 cut(s) 653
BseXI GCAGC 2 cut(s) 235, 788
BseYI CCCAGC 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 5 cut(s) 195, 220, 287, 461, 534
BshNI GGYRCC 1 cut(s) 388
BshVI ATCGAT 1 cut(s) 904
BsiHKAI GWGCWC 3 cut(s) 364, 378, 663
BsiHKCI CYCGRG 1 cut(s) 316
BsiSI CCGG 3 cut(s) 245, 317, 768
BslI CCNNNNNNNGG 5 cut(s) 181, 227, 530, 541, 701
BsmAI GTCTC 3 cut(s) 40, 388, 805
BsnI GGCC 5 cut(s) 195, 220, 287, 461, 534
Bso31I GGTCTC 2 cut(s) 40, 388
BsoBI CYCGRG 1 cut(s) 316
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 3 cut(s) 364, 378, 663
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 4 cut(s) 186, 564, 708, 901
BspACI CCGC 2 cut(s) 221, 531
BspANI GGCC 5 cut(s) 195, 220, 287, 461, 534
BspCNI CTCAG 6 cut(s) 224, 261, 310, 390, 589, 770
BspDI ATCGAT 1 cut(s) 904
BspFNI CGCG 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 390, 522
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 1 cut(s) 716
BspT104I TTCGAA 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 388
BspTI CTTAAG 1 cut(s) 140
BspTNI GGTCTC 2 cut(s) 40, 388
BsrDI GCAATG 2 cut(s) 51, 818
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 2 cut(s) 658, 684
BssECI CCNNGG 4 cut(s) 157, 316, 505, 506
BssMI GATC 4 cut(s) 186, 564, 708, 901
BssNI GRCGYC 1 cut(s) 258
Bst2UI CCWGG 5 cut(s) 197, 228, 393, 507, 702
Bst4CI ACNGT 4 cut(s) 151, 611, 626, 675
BstACI GRCGYC 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 426
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 8 cut(s) 177, 211, 269, 297, 377, 477, 576, 757
BstEII GGTNACC 1 cut(s) 593
BstF5I GGATG 3 cut(s) 153, 550, 710
BstFNI CGCG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 4 cut(s) 189, 567, 711, 904
BstMAI GTCTC 3 cut(s) 40, 388, 805
BstMBI GATC 4 cut(s) 186, 564, 708, 901
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstNI CCWGG 5 cut(s) 197, 228, 393, 507, 702
BstPI GGTNACC 1 cut(s) 593
BstSCI CCNGG 7 cut(s) 195, 226, 315, 316, 391, 505, 700
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 235, 788
BstXI CCANNNNNNTGG 1 cut(s) 506
Bsu15I ATCGAT 1 cut(s) 904
BsuRI GGCC 5 cut(s) 195, 220, 287, 461, 534
BsuTUI ATCGAT 1 cut(s) 904
BtsCI GGATG 3 cut(s) 153, 550, 710
Cac8I GCNNGC 1 cut(s) 529
CaiI CAGNNNCTG 1 cut(s) 679
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 6 cut(s) 218, 459, 520, 533, 626, 682
Cfr9I CCCGGG 1 cut(s) 316
ClaI ATCGAT 1 cut(s) 904
CseI GACGC 1 cut(s) 247
Csp6I GTAC 4 cut(s) 205, 427, 736, 761
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviAII CATG 3 cut(s) 456, 632, 898
CviQI GTAC 4 cut(s) 205, 427, 736, 761
DdeI CTNAG 8 cut(s) 177, 211, 269, 297, 377, 477, 576, 757
DpnI GATC 4 cut(s) 188, 566, 710, 903
DpnII GATC 4 cut(s) 186, 564, 708, 901
Eco147I AGGCCT 1 cut(s) 287
Eco31I GGTCTC 2 cut(s) 40, 388
Eco47I GGWCC 3 cut(s) 520, 626, 682
Eco88I CYCGRG 1 cut(s) 316
Eco91I GGTNACC 1 cut(s) 593
EcoO109I RGGNCCY 1 cut(s) 520
EcoO65I GGTNACC 1 cut(s) 593
EcoRII CCWGG 5 cut(s) 195, 226, 391, 505, 700
EcoT22I ATGCAT 1 cut(s) 457
FaeI CATG 3 cut(s) 459, 635, 901
FatI CATG 3 cut(s) 455, 631, 897
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 4 cut(s) 221, 224, 532, 777
FokI GGATG 3 cut(s) 140, 557, 717
Fsp4HI GCNGC 4 cut(s) 221, 224, 532, 777
FspBI CTAG 1 cut(s) 599
GlaI GCGC 1 cut(s) 252
GluI GCNGC 4 cut(s) 221, 224, 532, 777
GsaI CCCAGC 1 cut(s) 527
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 5 cut(s) 195, 220, 287, 461, 534
HapII CCGG 3 cut(s) 245, 317, 768
HgaI GACGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 3 cut(s) 459, 635, 901
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 4 cut(s) 119, 511, 716, 771
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 3 cut(s) 245, 317, 768
HphI GGTGA 5 cut(s) 104, 114, 455, 684, 861
Hpy166II GTNNAC 6 cut(s) 95, 262, 307, 313, 328, 869
Hpy188I TCNGA 5 cut(s) 270, 300, 420, 579, 877
Hpy188III TCNNGA 3 cut(s) 365, 515, 640
Hpy8I GTNNAC 6 cut(s) 95, 262, 307, 313, 328, 869
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 800
HpyCH4III ACNGT 4 cut(s) 151, 611, 626, 675
HpyCH4IV ACGT 3 cut(s) 303, 309, 494
HpyCH4V TGCA 6 cut(s) 51, 68, 404, 455, 554, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 8 cut(s) 177, 211, 269, 297, 377, 477, 576, 757
HpySE526I ACGT 3 cut(s) 303, 309, 494
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 3 cut(s) 459, 635, 901
HspAI GCGC 1 cut(s) 251
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 4 cut(s) 186, 564, 708, 901
LmnI GCTCC 1 cut(s) 666
Lsp1109I GCAGC 2 cut(s) 235, 788
LweI GCATC 2 cut(s) 535, 870
MaeI CTAG 1 cut(s) 599
MaeII ACGT 3 cut(s) 303, 309, 494
MaeIII GTNAC 4 cut(s) 443, 490, 593, 675
MalI GATC 4 cut(s) 188, 566, 710, 903
MboI GATC 4 cut(s) 186, 564, 708, 901
MboII GAAGA 2 cut(s) 14, 128
MhlI GDGCHC 3 cut(s) 364, 378, 663
MluCI AATT 4 cut(s) 643, 785, 793, 827
MmeI TCCRAC 1 cut(s) 522
Mph1103I ATGCAT 1 cut(s) 457
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 3 cut(s) 141, 312, 465
MslI CAYNNNNRTG 1 cut(s) 87
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 3 cut(s) 245, 317, 768
MspR9I CCNGG 7 cut(s) 197, 228, 317, 318, 393, 507, 702
MvaI CCWGG 5 cut(s) 197, 228, 393, 507, 702
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 467
NciI CCSGG 2 cut(s) 317, 318
NdeI CATATG 1 cut(s) 70
NdeII GATC 4 cut(s) 186, 564, 708, 901
NlaIII CATG 3 cut(s) 459, 635, 901
NlaIV GGNNCC 2 cut(s) 390, 522
NmeAIII GCCGAG 2 cut(s) 138, 255
NmuCI GTSAC 1 cut(s) 443
NsiI ATGCAT 1 cut(s) 457
NspV TTCGAA 1 cut(s) 114
PasI CCCWGGG 1 cut(s) 506
PceI AGGCCT 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 780
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 4 cut(s) 119, 511, 716, 771
PkrI GCNGC 4 cut(s) 222, 225, 533, 778
PpuMI RGGWCCY 1 cut(s) 520
Psp1406I AACGTT 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 520
Psp6I CCWGG 5 cut(s) 195, 226, 391, 505, 700
PspEI GGTNACC 1 cut(s) 593
PspFI CCCAGC 1 cut(s) 523
PspGI CCWGG 5 cut(s) 195, 226, 391, 505, 700
PspN4I GGNNCC 2 cut(s) 390, 522
PspPI GGNCC 6 cut(s) 218, 459, 520, 533, 626, 682
PspPPI RGGWCCY 1 cut(s) 520
PstI CTGCAG 1 cut(s) 406
PstNI CAGNNNCTG 1 cut(s) 679
RsaI GTAC 4 cut(s) 206, 428, 737, 762
RsaNI GTAC 4 cut(s) 205, 427, 736, 761
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 3 cut(s) 141, 312, 465
SatI GCNGC 4 cut(s) 221, 224, 532, 777
Sau3AI GATC 4 cut(s) 186, 564, 708, 901
Sau96I GGNCC 6 cut(s) 218, 459, 520, 533, 626, 682
ScrFI CCNGG 7 cut(s) 197, 228, 317, 318, 393, 507, 702
SduI GDGCHC 3 cut(s) 364, 378, 663
SfaNI GCATC 2 cut(s) 535, 870
SfcI CTRYAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 114
SinI GGWCC 3 cut(s) 520, 626, 682
SmaI CCCGGG 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 2 cut(s) 140, 363
SmoI CTYRAG 2 cut(s) 140, 363
Sse9I AATT 4 cut(s) 643, 785, 793, 827
SseBI AGGCCT 1 cut(s) 287
SsiI CCGC 2 cut(s) 221, 531
SspMI CTAG 1 cut(s) 599
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 7 cut(s) 195, 226, 315, 316, 391, 505, 700
TaaI ACNGT 4 cut(s) 151, 611, 626, 675
TaiI ACGT 3 cut(s) 306, 312, 497
TaqI TCGA 5 cut(s) 114, 189, 783, 791, 904
TasI AATT 4 cut(s) 643, 785, 793, 827
TatI WGTACW 3 cut(s) 204, 426, 735
TauI GCSGC 2 cut(s) 223, 534
TfiI GAWTC 4 cut(s) 119, 511, 716, 771
Tru1I TTAA 3 cut(s) 141, 312, 465
Tru9I TTAA 3 cut(s) 141, 312, 465
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 2 cut(s) 223, 776
Tsp45I GTSAC 1 cut(s) 443
TspGWI ACGGA 1 cut(s) 403
TspMI CCCGGG 1 cut(s) 316
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 3 cut(s) 520, 626, 682
XapI RAATTY 1 cut(s) 643
XmaI CCCGGG 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 1 cut(s) 599
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.