Rmu_co8504877.1_g000001

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8504877.1
OG0011779
Physical Location & Seq
Forward (+)
1 .. 1816
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8504877.1_g000001.1.cds

Sequence Viewer

Length: 1025 bp
gggaactaccaaatggacacttcgaagaatcacccagttcctcaaacctaaagaaaacagtcatcgtcgggaaacactcactcccaaagtgggaaatcgacggcctggtcgagtacatcgcaggtgggcctcagccaggtggcttctactttccggtggcgcgtggcgtccacgccgtgaggctcggcaacgaggcctccatttctcagaacgtcaatgtcaacccgggttcggtctactctctcacttttggcaccacaagaacttgtgctcaagacgaggtgctcaaggtctcggtgccgggtcagtctgcagagctttccatacagactctgttcagcagcgatgggggtgacacttatgcatgggcctttaaggcaacttccaaggttgttagggttacgttccacaaccctgggattcaagaggatcccgcttgcggtcctctcttggatgctattgcaatcaaggagatcatacttcctcagaagtatataagaggtaatttagtcaaaaatggtggctttgaaaacggtcctcatgtattcaagaatttctcaaccggagtcctcctccctccaaagttactggaccaaatctcaccgttgcccggatggatcatcgaatccctaaagcctgtgaagtacattgacaggaagcacttctcagttccagtcggattcgcagcaattgaattggttgcaggaagggagagtgccattgctcaaattattagaacaatcccaaacaaatcctacaaccttaccttcaccattggggatgcaaagaatggttgtcatggatcaatgatggttgaagccttcgctggtaaggaaaccctaaaagttccttatgtgtctcaaggcaagggtggatatagaactgcaagcttcaagttccaagcagtttccccaagaactagaataacattttacagtgcatactatcacacaaagcttcatgattttggtcatatgtgtggccctgtgttagacaatgtcattgtctttccaactagatactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

340

Amino Acids

37.04

Weight (kDa)

9.09

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41800 AT2G41810
fragaria_vesca FvH4_6g23670
malus_domestica MD14G1071300.v1.1
prunus_persica Prupe.7G061700_v2.0.a1
pyrus_communis pycom14g06080
rosa_chinensis RchiOBHm_Chr3g0482101
rosa_laevigata RLG00000023374
rosa_multiflora Rmu_co8504877.1_g000001 Rmu_sc0000192.1_g000028 Rmu_sc0001738.1_g000034
rosa_roxburghii Rroxscaffold_6G00399700 Rroxscaffold_6G00400070
rosa_rugosa Rorug03G0194800
rosa_samantha Rh3AG246000 Rh3BG281100 Rh3CG277200 Rh3DG273500
rosa_wichuraiana Rw3G022000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
AasI GACNNNNNNGTC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 2 cut(s) 253, 297
AccI GTMKAC 1 cut(s) 236
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 434, 440
AclWI GGATC 4 cut(s) 424, 437, 625, 810
AcsI RAATTY 1 cut(s) 552
AcyI GRCGYC 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 177
AfaI GTAC 2 cut(s) 115, 646
AfiI CCNNNNNNNGG 5 cut(s) 90, 136, 231, 439, 610
AgsI TTSAA 6 cut(s) 424, 529, 549, 694, 817, 894
AjnI CCWGG 3 cut(s) 104, 135, 414
AluBI AGCT 3 cut(s) 318, 890, 957
AluI AGCT 3 cut(s) 318, 890, 957
Alw21I GWGCWC 2 cut(s) 273, 287
Alw26I GTCTC 2 cut(s) 297, 863
AlwI GGATC 4 cut(s) 424, 437, 625, 810
AlwNI CAGNNNCTG 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 5 cut(s) 102, 127, 194, 368, 981
ApeKI GCWGC 2 cut(s) 341, 685
ApoI RAATTY 1 cut(s) 552
Asp700I GAANNNNTTC 1 cut(s) 661
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 6 cut(s) 127, 368, 442, 535, 591, 982
AsuC2I CCSGG 4 cut(s) 226, 227, 302, 611
AsuHPI GGTGA 4 cut(s) 23, 364, 593, 762
AsuII TTCGAA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 3 cut(s) 442, 535, 591
BamHI GGATCC 1 cut(s) 429
BanI GGYRCC 2 cut(s) 253, 297
Bbv12I GWGCWC 2 cut(s) 273, 287
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 353, 697
BccI CCATC 3 cut(s) 340, 608, 804
BceAI ACGGC 2 cut(s) 117, 160
BciT130I CCWGG 3 cut(s) 106, 137, 416
BcnI CCSGG 4 cut(s) 226, 227, 302, 611
BcoDI GTCTC 2 cut(s) 297, 863
BfaI CTAG 2 cut(s) 920, 1016
BfmI CTRYAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 112
BglI GCCNNNNNGGC 1 cut(s) 376
BisI GCNGC 2 cut(s) 342, 686
BlsI GCNGC 2 cut(s) 343, 687
Bme1390I CCNGG 7 cut(s) 106, 137, 226, 227, 302, 416, 611
Bme18I GGWCC 3 cut(s) 442, 535, 591
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 6 cut(s) 127, 368, 442, 535, 591, 982
BmiI GGNNCC 3 cut(s) 255, 299, 431
BmrFI CCNGG 7 cut(s) 106, 137, 226, 227, 302, 416, 611
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 444, 771
BmuI ACTGGG 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 557, 589
Bpu10I CCTNAGC 1 cut(s) 131
Bpu14I TTCGAA 1 cut(s) 23
BpuEI CTTGAG 3 cut(s) 257, 271, 845
BpuMI CCSGG 4 cut(s) 226, 227, 302, 611
BsaHI GRCGYC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 4 cut(s) 225, 386, 414, 415
BsaWI WCCGGW 2 cut(s) 153, 562
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 181, 211
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 136, 231, 439, 610
Bse1I ACTGG 3 cut(s) 35, 593, 673
Bse3DI GCAATG 1 cut(s) 719
BseBI CCWGG 3 cut(s) 106, 137, 416
BseDI CCNNGG 4 cut(s) 225, 386, 414, 415
BseGI GGATG 3 cut(s) 459, 619, 786
BseLI CCNNNNNNNGG 5 cut(s) 90, 136, 231, 439, 610
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 4 cut(s) 145, 220, 499, 680
BseNI ACTGG 3 cut(s) 35, 593, 673
BseRI GAGGAG 1 cut(s) 562
BseXI GCAGC 2 cut(s) 353, 697
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 5 cut(s) 104, 129, 196, 370, 983
BshNI GGYRCC 2 cut(s) 253, 297
BsiHKAI GWGCWC 2 cut(s) 273, 287
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 5 cut(s) 154, 226, 301, 563, 611
BslI CCNNNNNNNGG 5 cut(s) 90, 136, 231, 439, 610
BsmAI GTCTC 2 cut(s) 297, 863
BsnI GGCC 5 cut(s) 104, 129, 196, 370, 983
Bso31I GGTCTC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 225
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 273, 287
Bsp143I GATC 4 cut(s) 429, 473, 617, 802
BspACI CCGC 2 cut(s) 434, 440
BspANI GGCC 5 cut(s) 104, 129, 196, 370, 983
BspCNI CTCAG 4 cut(s) 144, 219, 498, 679
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 3 cut(s) 255, 299, 431
BspMAI CTGCAG 1 cut(s) 315
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 4 cut(s) 424, 437, 625, 810
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 2 cut(s) 253, 297
BspTNI GGTCTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 719
BsrI ACTGG 3 cut(s) 35, 593, 673
BssECI CCNNGG 4 cut(s) 225, 386, 414, 415
BssMI GATC 4 cut(s) 429, 473, 617, 802
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 3 cut(s) 106, 137, 416
Bst4CI ACNGT 4 cut(s) 60, 535, 605, 937
BstACI GRCGYC 1 cut(s) 167
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 438, 888
BstDEI CTNAG 4 cut(s) 131, 206, 485, 666
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 3 cut(s) 459, 619, 786
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 4 cut(s) 432, 476, 620, 805
BstMAI GTCTC 2 cut(s) 297, 863
BstMBI GATC 4 cut(s) 429, 473, 617, 802
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 3 cut(s) 106, 137, 416
BstSCI CCNGG 7 cut(s) 104, 135, 224, 225, 300, 414, 609
BstSFI CTRYAG 1 cut(s) 311
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 353, 697
BstX2I RGATCY 1 cut(s) 429
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 5 cut(s) 104, 129, 196, 370, 983
BtgZI GCGATG 2 cut(s) 102, 359
BtsCI GGATG 3 cut(s) 459, 619, 786
BtsIMutI CAGTG 1 cut(s) 942
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 438, 888
CaiI CAGNNNCTG 1 cut(s) 333
CciI TCATGA 1 cut(s) 960
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 6 cut(s) 127, 368, 442, 535, 591, 982
Cfr9I CCCGGG 1 cut(s) 225
CseI GACGC 1 cut(s) 156
Csp6I GTAC 2 cut(s) 114, 645
CspCI CAANNNNNGTGG 2 cut(s) 501, 536
CviAII CATG 4 cut(s) 365, 541, 799, 961
CviQI GTAC 2 cut(s) 114, 645
DdeI CTNAG 4 cut(s) 131, 206, 485, 666
DpnI GATC 4 cut(s) 431, 475, 619, 804
DpnII GATC 4 cut(s) 429, 473, 617, 802
DraIII CACNNNGTG 1 cut(s) 177
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 386
Eco147I AGGCCT 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 297
Eco47I GGWCC 3 cut(s) 442, 535, 591
Eco88I CYCGRG 1 cut(s) 225
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoRII CCWGG 3 cut(s) 104, 135, 414
EcoT14I CCWWGG 1 cut(s) 386
EcoT22I ATGCAT 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 4 cut(s) 368, 544, 802, 964
FatI CATG 4 cut(s) 364, 540, 798, 960
FauI CCCGC 1 cut(s) 441
FauNDI CATATG 1 cut(s) 974
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 342, 686
FokI GGATG 3 cut(s) 466, 626, 793
Fsp4HI GCNGC 2 cut(s) 342, 686
FspBI CTAG 2 cut(s) 920, 1016
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 342, 686
HaeIII GGCC 5 cut(s) 104, 129, 196, 370, 983
HapII CCGG 5 cut(s) 154, 226, 301, 563, 611
HgaI GACGC 1 cut(s) 156
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 4 cut(s) 368, 544, 802, 964
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HindIII AAGCTT 2 cut(s) 888, 955
HinfI GANTC 6 cut(s) 28, 330, 420, 566, 625, 680
HpaII CCGG 5 cut(s) 154, 226, 301, 563, 611
HphI GGTGA 4 cut(s) 23, 364, 593, 762
Hpy166II GTNNAC 3 cut(s) 171, 222, 237
Hpy188I TCNGA 3 cut(s) 209, 488, 679
Hpy188III TCNNGA 5 cut(s) 69, 274, 424, 549, 961
Hpy8I GTNNAC 3 cut(s) 171, 222, 237
Hpy99I CGWCG 2 cut(s) 70, 103
HpyAV CCTTC 3 cut(s) 701, 777, 831
HpyCH4III ACNGT 4 cut(s) 60, 535, 605, 937
HpyCH4IV ACGT 2 cut(s) 212, 403
HpyCH4V TGCA 7 cut(s) 313, 364, 463, 703, 784, 886, 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 4 cut(s) 131, 206, 485, 666
HpySE526I ACGT 2 cut(s) 212, 403
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 4 cut(s) 368, 544, 802, 964
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 4 cut(s) 429, 473, 617, 802
Lsp1109I GCAGC 2 cut(s) 353, 697
LweI GCATC 2 cut(s) 444, 771
MaeI CTAG 2 cut(s) 920, 1016
MaeII ACGT 2 cut(s) 212, 403
MaeIII GTNAC 3 cut(s) 352, 399, 584
MalI GATC 4 cut(s) 431, 475, 619, 804
MboI GATC 4 cut(s) 429, 473, 617, 802
MboII GAAGA 1 cut(s) 37
MfeI CAATTG 1 cut(s) 689
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 2 cut(s) 273, 287
MluCI AATT 5 cut(s) 504, 552, 689, 694, 728
MlyI GAGTC 2 cut(s) 324, 575
MmeI TCCRAC 1 cut(s) 657
Mph1103I ATGCAT 1 cut(s) 366
MroXI GAANNNNTTC 1 cut(s) 661
MseI TTAA 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 977
MspI CCGG 5 cut(s) 154, 226, 301, 563, 611
MspR9I CCNGG 7 cut(s) 106, 137, 226, 227, 302, 416, 611
MunI CAATTG 1 cut(s) 689
MvaI CCWGG 3 cut(s) 106, 137, 416
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 376
NciI CCSGG 4 cut(s) 226, 227, 302, 611
NdeI CATATG 1 cut(s) 974
NdeII GATC 4 cut(s) 429, 473, 617, 802
NlaIII CATG 4 cut(s) 368, 544, 802, 964
NlaIV GGNNCC 3 cut(s) 255, 299, 431
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 366
NspV TTCGAA 1 cut(s) 23
PagI TCATGA 1 cut(s) 960
PaqCI CACCTGC 1 cut(s) 112
PasI CCCWGGG 1 cut(s) 415
PceI AGGCCT 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 661
PfeI GAWTC 4 cut(s) 28, 420, 625, 680
PflFI GACNNNGTC 1 cut(s) 997
PkrI GCNGC 2 cut(s) 343, 687
PleI GAGTC 2 cut(s) 324, 574
PpsI GAGTC 2 cut(s) 324, 574
Psp6I CCWGG 3 cut(s) 104, 135, 414
PspGI CCWGG 3 cut(s) 104, 135, 414
PspN4I GGNNCC 3 cut(s) 255, 299, 431
PspPI GGNCC 6 cut(s) 127, 368, 442, 535, 591, 982
PstI CTGCAG 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 333
PsuI RGATCY 1 cut(s) 429
PsyI GACNNNGTC 1 cut(s) 997
RsaI GTAC 2 cut(s) 115, 646
RsaNI GTAC 2 cut(s) 114, 645
RseI CAYNNNNRTG 1 cut(s) 977
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 2 cut(s) 342, 686
Sau3AI GATC 4 cut(s) 429, 473, 617, 802
Sau96I GGNCC 6 cut(s) 127, 368, 442, 535, 591, 982
SchI GAGTC 2 cut(s) 324, 575
ScrFI CCNGG 7 cut(s) 106, 137, 226, 227, 302, 416, 611
SduI GDGCHC 2 cut(s) 273, 287
SfaNI GCATC 2 cut(s) 444, 771
SfcI CTRYAG 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 3 cut(s) 442, 535, 591
SmaI CCCGGG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 977
SmlI CTYRAG 3 cut(s) 272, 286, 860
SmoI CTYRAG 3 cut(s) 272, 286, 860
Sse9I AATT 5 cut(s) 504, 552, 689, 694, 728
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 2 cut(s) 434, 440
SspMI CTAG 2 cut(s) 920, 1016
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 7 cut(s) 104, 135, 224, 225, 300, 414, 609
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 4 cut(s) 60, 535, 605, 937
TaiI ACGT 2 cut(s) 215, 406
TaqI TCGA 4 cut(s) 23, 98, 110, 623
TaqII GACCGA 1 cut(s) 222
TasI AATT 5 cut(s) 504, 552, 689, 694, 728
TatI WGTACW 2 cut(s) 113, 644
TfiI GAWTC 4 cut(s) 28, 420, 625, 680
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TscAI CASTG 1 cut(s) 942
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 341, 685
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 949
TspMI CCCGGG 1 cut(s) 225
TspRI CASTG 1 cut(s) 942
Tth111I GACNNNGTC 1 cut(s) 997
VpaK11BI GGWCC 3 cut(s) 442, 535, 591
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 552
XmaI CCCGGG 1 cut(s) 225
XmiI GTMKAC 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 661
XspI CTAG 2 cut(s) 920, 1016
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.